Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00330

Experiment: LB_Anaerobic_120MIN_ZN12A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00310 and CSW01_00315 are separated by 107 nucleotidesCSW01_00315 and CSW01_00320 are separated by 25 nucleotidesCSW01_00320 and CSW01_00325 are separated by 29 nucleotidesCSW01_00325 and CSW01_00330 are separated by 232 nucleotidesCSW01_00330 and CSW01_00335 are separated by 251 nucleotides CSW01_00310: CSW01_00310 - 23S ribosomal RNA, at 55,778 to 58,693 _00310 CSW01_00315: CSW01_00315 - 5S ribosomal RNA, at 58,801 to 58,916 _00315 CSW01_00320: CSW01_00320 - tRNA-Asp, at 58,942 to 59,018 _00320 CSW01_00325: CSW01_00325 - tRNA-Trp, at 59,048 to 59,124 _00325 CSW01_00330: CSW01_00330 - fluoride efflux transporter CrcB, at 59,357 to 59,737 _00330 CSW01_00335: CSW01_00335 - phosphomethylpyrimidine synthase, at 59,989 to 61,926 _00335 Position (kb) 59 60Strain fitness (log2 ratio) -2 -1 0 1at 59.285 kb on - strandat 59.313 kb on - strandat 59.384 kb on + strandat 59.384 kb on + strandat 59.384 kb on + strandat 59.538 kb on + strand, within CSW01_00330at 59.539 kb on + strand, within CSW01_00330at 59.539 kb on + strand, within CSW01_00330at 59.544 kb on + strand, within CSW01_00330at 59.547 kb on - strand, within CSW01_00330at 59.552 kb on - strand, within CSW01_00330at 59.682 kb on - strand, within CSW01_00330at 59.847 kb on + strandat 59.852 kb on + strandat 59.860 kb on - strandat 59.883 kb on - strandat 59.893 kb on - strandat 59.910 kb on - strandat 59.914 kb on + strandat 59.989 kb on + strandat 60.046 kb on + strandat 60.046 kb on + strandat 60.175 kb on - strandat 60.193 kb on + strand, within CSW01_00335at 60.223 kb on - strand, within CSW01_00335at 60.237 kb on - strand, within CSW01_00335at 60.261 kb on + strand, within CSW01_00335at 60.269 kb on - strand, within CSW01_00335at 60.269 kb on - strand, within CSW01_00335at 60.269 kb on - strand, within CSW01_00335at 60.275 kb on + strand, within CSW01_00335at 60.283 kb on - strand, within CSW01_00335at 60.285 kb on - strand, within CSW01_00335at 60.294 kb on - strand, within CSW01_00335at 60.322 kb on + strand, within CSW01_00335at 60.352 kb on + strand, within CSW01_00335at 60.361 kb on - strand, within CSW01_00335at 60.408 kb on + strand, within CSW01_00335at 60.408 kb on + strand, within CSW01_00335at 60.408 kb on + strand, within CSW01_00335at 60.413 kb on + strand, within CSW01_00335at 60.431 kb on + strand, within CSW01_00335at 60.441 kb on + strand, within CSW01_00335at 60.444 kb on - strand, within CSW01_00335at 60.479 kb on + strand, within CSW01_00335at 60.508 kb on + strand, within CSW01_00335at 60.580 kb on - strand, within CSW01_00335at 60.596 kb on + strand, within CSW01_00335at 60.598 kb on + strand, within CSW01_00335at 60.606 kb on - strand, within CSW01_00335at 60.634 kb on - strand, within CSW01_00335at 60.634 kb on - strand, within CSW01_00335at 60.651 kb on + strand, within CSW01_00335at 60.682 kb on - strand, within CSW01_00335at 60.689 kb on - strand, within CSW01_00335at 60.689 kb on - strand, within CSW01_00335at 60.701 kb on + strand, within CSW01_00335at 60.710 kb on - strand, within CSW01_00335

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_120MIN_ZN12A
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59,285 - -0.8
59,313 - +0.1
59,384 + +0.8
59,384 + -0.2
59,384 + +0.4
59,538 + CSW01_00330 0.48 -0.8
59,539 + CSW01_00330 0.48 +0.1
59,539 + CSW01_00330 0.48 -0.3
59,544 + CSW01_00330 0.49 -1.1
59,547 - CSW01_00330 0.50 -0.8
59,552 - CSW01_00330 0.51 -0.2
59,682 - CSW01_00330 0.85 -0.3
59,847 + -0.1
59,852 + -0.1
59,860 - -0.4
59,883 - +1.0
59,893 - +0.1
59,910 - +0.4
59,914 + -0.0
59,989 + -0.3
60,046 + -0.2
60,046 + +0.4
60,175 - +0.2
60,193 + CSW01_00335 0.11 -0.4
60,223 - CSW01_00335 0.12 +0.3
60,237 - CSW01_00335 0.13 -1.0
60,261 + CSW01_00335 0.14 +0.1
60,269 - CSW01_00335 0.14 +0.0
60,269 - CSW01_00335 0.14 -0.0
60,269 - CSW01_00335 0.14 -0.2
60,275 + CSW01_00335 0.15 -0.4
60,283 - CSW01_00335 0.15 -2.1
60,285 - CSW01_00335 0.15 -0.0
60,294 - CSW01_00335 0.16 +1.4
60,322 + CSW01_00335 0.17 +0.1
60,352 + CSW01_00335 0.19 -0.1
60,361 - CSW01_00335 0.19 +0.2
60,408 + CSW01_00335 0.22 -0.9
60,408 + CSW01_00335 0.22 +0.3
60,408 + CSW01_00335 0.22 -0.1
60,413 + CSW01_00335 0.22 -0.6
60,431 + CSW01_00335 0.23 -0.1
60,441 + CSW01_00335 0.23 +0.4
60,444 - CSW01_00335 0.23 -0.3
60,479 + CSW01_00335 0.25 -0.9
60,508 + CSW01_00335 0.27 +0.4
60,580 - CSW01_00335 0.30 -0.0
60,596 + CSW01_00335 0.31 +1.1
60,598 + CSW01_00335 0.31 -0.3
60,606 - CSW01_00335 0.32 +0.0
60,634 - CSW01_00335 0.33 -0.2
60,634 - CSW01_00335 0.33 +0.1
60,651 + CSW01_00335 0.34 +0.1
60,682 - CSW01_00335 0.36 +0.0
60,689 - CSW01_00335 0.36 -0.1
60,689 - CSW01_00335 0.36 -0.4
60,701 + CSW01_00335 0.37 -0.3
60,710 - CSW01_00335 0.37 +0.5

Or see this region's nucleotide sequence