Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23350

Experiment: With vitamins t2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS23345 and BPHYT_RS23350 are separated by 77 nucleotidesBPHYT_RS23350 and BPHYT_RS23355 are separated by 85 nucleotides BPHYT_RS23345: BPHYT_RS23345 - nucleotide sugar dehydrogenase, at 798,443 to 799,720 _RS23345 BPHYT_RS23350: BPHYT_RS23350 - NAD-dependent epimerase/dehydratase, at 799,798 to 800,829 _RS23350 BPHYT_RS23355: BPHYT_RS23355 - membrane protein, at 800,915 to 802,240 _RS23355 Position (kb) 799 800 801Strain fitness (log2 ratio) -1 0 1at 799.329 kb on - strand, within BPHYT_RS23345at 799.500 kb on - strand, within BPHYT_RS23345at 799.670 kb on + strandat 800.347 kb on + strand, within BPHYT_RS23350at 800.416 kb on + strand, within BPHYT_RS23350at 800.578 kb on + strand, within BPHYT_RS23350at 801.056 kb on + strand, within BPHYT_RS23355at 801.556 kb on - strand, within BPHYT_RS23355

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction With vitamins t2
remove
799,329 - BPHYT_RS23345 0.69 +0.4
799,500 - BPHYT_RS23345 0.83 +0.3
799,670 + -0.7
800,347 + BPHYT_RS23350 0.53 -0.1
800,416 + BPHYT_RS23350 0.60 +1.7
800,578 + BPHYT_RS23350 0.76 +1.5
801,056 + BPHYT_RS23355 0.11 +0.6
801,556 - BPHYT_RS23355 0.48 -0.5

Or see this region's nucleotide sequence