Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS09205

Experiment: With vitamins t2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS09200 and BPHYT_RS09205 are separated by 525 nucleotidesBPHYT_RS09205 and BPHYT_RS09210 are separated by 132 nucleotides BPHYT_RS09200: BPHYT_RS09200 - phosphoserine phosphatase, at 2,081,887 to 2,082,726 _RS09200 BPHYT_RS09205: BPHYT_RS09205 - cytochrome P450, at 2,083,252 to 2,084,505 _RS09205 BPHYT_RS09210: BPHYT_RS09210 - DNA repair protein, at 2,084,638 to 2,085,639 _RS09210 Position (kb) 2083 2084 2085Strain fitness (log2 ratio) -2 -1 0 1at 2083.489 kb on + strand, within BPHYT_RS09205at 2083.507 kb on + strand, within BPHYT_RS09205at 2083.717 kb on - strand, within BPHYT_RS09205at 2084.530 kb on + strandat 2084.531 kb on - strandat 2084.619 kb on - strandat 2084.699 kb on + strandat 2084.852 kb on - strand, within BPHYT_RS09210at 2084.852 kb on - strand, within BPHYT_RS09210at 2084.969 kb on - strand, within BPHYT_RS09210at 2085.004 kb on + strand, within BPHYT_RS09210at 2085.004 kb on + strand, within BPHYT_RS09210at 2085.124 kb on - strand, within BPHYT_RS09210at 2085.271 kb on + strand, within BPHYT_RS09210at 2085.271 kb on + strand, within BPHYT_RS09210

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Per-strain Table

Position Strand Gene LocusTag Fraction With vitamins t2
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2,083,489 + BPHYT_RS09205 0.19 +0.6
2,083,507 + BPHYT_RS09205 0.20 -0.6
2,083,717 - BPHYT_RS09205 0.37 -1.2
2,084,530 + -0.3
2,084,531 - -2.0
2,084,619 - +1.0
2,084,699 + +0.7
2,084,852 - BPHYT_RS09210 0.21 -0.7
2,084,852 - BPHYT_RS09210 0.21 -0.0
2,084,969 - BPHYT_RS09210 0.33 +0.3
2,085,004 + BPHYT_RS09210 0.37 -1.0
2,085,004 + BPHYT_RS09210 0.37 +0.1
2,085,124 - BPHYT_RS09210 0.49 +1.0
2,085,271 + BPHYT_RS09210 0.63 +0.3
2,085,271 + BPHYT_RS09210 0.63 -0.8

Or see this region's nucleotide sequence