Experiment: With vitamins t2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS08325 and BPHYT_RS08330 are separated by 344 nucleotides BPHYT_RS08330 and BPHYT_RS08335 are separated by 67 nucleotides BPHYT_RS08335 and BPHYT_RS08340 are separated by 185 nucleotides
BPHYT_RS08325: BPHYT_RS08325 - glucose dehydrogenase, at 1,902,674 to 1,905,187
_RS08325
BPHYT_RS08330: BPHYT_RS08330 - histidine kinase, at 1,905,532 to 1,911,033
_RS08330
BPHYT_RS08335: BPHYT_RS08335 - hypothetical protein, at 1,911,101 to 1,911,478
_RS08335
BPHYT_RS08340: BPHYT_RS08340 - chemotaxis protein CheY, at 1,911,664 to 1,912,311
_RS08340
Position (kb)
1905
1906
1907
1908
1909
1910
1911
1912 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1904.825 kb on + strand, within BPHYT_RS08325 at 1904.825 kb on + strand, within BPHYT_RS08325 at 1904.825 kb on + strand, within BPHYT_RS08325 at 1904.996 kb on + strand at 1905.081 kb on - strand at 1905.168 kb on - strand at 1905.334 kb on - strand at 1905.386 kb on - strand at 1905.412 kb on - strand at 1905.690 kb on - strand at 1906.030 kb on + strand at 1906.031 kb on - strand at 1906.612 kb on + strand, within BPHYT_RS08330 at 1906.613 kb on - strand, within BPHYT_RS08330 at 1906.613 kb on - strand, within BPHYT_RS08330 at 1907.503 kb on + strand, within BPHYT_RS08330 at 1907.756 kb on - strand, within BPHYT_RS08330 at 1907.824 kb on + strand, within BPHYT_RS08330 at 1907.995 kb on + strand, within BPHYT_RS08330 at 1908.238 kb on + strand, within BPHYT_RS08330 at 1908.441 kb on - strand, within BPHYT_RS08330 at 1908.971 kb on - strand, within BPHYT_RS08330 at 1909.226 kb on - strand, within BPHYT_RS08330 at 1909.229 kb on + strand, within BPHYT_RS08330 at 1909.229 kb on + strand, within BPHYT_RS08330 at 1909.484 kb on + strand, within BPHYT_RS08330 at 1909.715 kb on - strand, within BPHYT_RS08330 at 1909.790 kb on - strand, within BPHYT_RS08330 at 1909.962 kb on + strand, within BPHYT_RS08330 at 1910.053 kb on - strand, within BPHYT_RS08330 at 1911.347 kb on + strand, within BPHYT_RS08335 at 1911.763 kb on + strand, within BPHYT_RS08340
Per-strain Table
Position Strand Gene LocusTag Fraction With vitamins t2 remove 1,904,825 + BPHYT_RS08325 0.86 -0.3 1,904,825 + BPHYT_RS08325 0.86 +1.8 1,904,825 + BPHYT_RS08325 0.86 +0.5 1,904,996 + +0.1 1,905,081 - +0.2 1,905,168 - -1.3 1,905,334 - +1.6 1,905,386 - +0.5 1,905,412 - -1.0 1,905,690 - -0.3 1,906,030 + +0.6 1,906,031 - -0.0 1,906,612 + BPHYT_RS08330 0.20 -0.6 1,906,613 - BPHYT_RS08330 0.20 +0.5 1,906,613 - BPHYT_RS08330 0.20 -0.2 1,907,503 + BPHYT_RS08330 0.36 -0.0 1,907,756 - BPHYT_RS08330 0.40 -0.0 1,907,824 + BPHYT_RS08330 0.42 +0.7 1,907,995 + BPHYT_RS08330 0.45 +1.4 1,908,238 + BPHYT_RS08330 0.49 +0.6 1,908,441 - BPHYT_RS08330 0.53 +1.6 1,908,971 - BPHYT_RS08330 0.63 +0.7 1,909,226 - BPHYT_RS08330 0.67 +1.7 1,909,229 + BPHYT_RS08330 0.67 -0.0 1,909,229 + BPHYT_RS08330 0.67 -0.0 1,909,484 + BPHYT_RS08330 0.72 -0.1 1,909,715 - BPHYT_RS08330 0.76 +0.8 1,909,790 - BPHYT_RS08330 0.77 +1.6 1,909,962 + BPHYT_RS08330 0.81 -2.6 1,910,053 - BPHYT_RS08330 0.82 -1.6 1,911,347 + BPHYT_RS08335 0.65 +0.1 1,911,763 + BPHYT_RS08340 0.15 -0.0
Or see this region's nucleotide sequence