Experiment: With vitamins t2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS05290 and BPHYT_RS05295 overlap by 26 nucleotides BPHYT_RS05295 and BPHYT_RS05300 are separated by 83 nucleotides BPHYT_RS05300 and BPHYT_RS05305 are separated by 74 nucleotides BPHYT_RS05305 and BPHYT_RS05310 are separated by 243 nucleotides
BPHYT_RS05290: BPHYT_RS05290 - hypothetical protein, at 1,220,387 to 1,220,890
_RS05290
BPHYT_RS05295: BPHYT_RS05295 - hypothetical protein, at 1,220,865 to 1,221,233
_RS05295
BPHYT_RS05300: BPHYT_RS05300 - polyketide cyclase, at 1,221,317 to 1,221,721
_RS05300
BPHYT_RS05305: BPHYT_RS05305 - LysR family transcriptional regulator, at 1,221,796 to 1,222,737
_RS05305
BPHYT_RS05310: BPHYT_RS05310 - LysR family transcriptional regulator, at 1,222,981 to 1,223,898
_RS05310
Position (kb) 1221
1222
1223 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1220.818 kb on + strand, within BPHYT_RS05290 at 1220.819 kb on - strand, within BPHYT_RS05290 at 1221.035 kb on + strand, within BPHYT_RS05295 at 1221.359 kb on - strand, within BPHYT_RS05300 at 1221.359 kb on - strand, within BPHYT_RS05300 at 1221.387 kb on - strand, within BPHYT_RS05300 at 1221.472 kb on - strand, within BPHYT_RS05300 at 1221.670 kb on - strand, within BPHYT_RS05300 at 1221.691 kb on - strand at 1221.693 kb on - strand at 1221.766 kb on + strand at 1221.845 kb on - strand at 1222.318 kb on - strand, within BPHYT_RS05305 at 1222.983 kb on - strand at 1222.984 kb on + strand at 1223.230 kb on - strand, within BPHYT_RS05310 at 1223.348 kb on - strand, within BPHYT_RS05310 at 1223.348 kb on - strand, within BPHYT_RS05310 at 1223.404 kb on + strand, within BPHYT_RS05310 at 1223.692 kb on - strand, within BPHYT_RS05310 at 1223.702 kb on + strand, within BPHYT_RS05310 at 1223.703 kb on - strand, within BPHYT_RS05310 at 1223.703 kb on - strand, within BPHYT_RS05310 at 1223.706 kb on - strand, within BPHYT_RS05310 at 1223.706 kb on - strand, within BPHYT_RS05310
Per-strain Table
Position Strand Gene LocusTag Fraction With vitamins t2 remove 1,220,818 + BPHYT_RS05290 0.86 -0.9 1,220,819 - BPHYT_RS05290 0.86 -1.9 1,221,035 + BPHYT_RS05295 0.46 -0.1 1,221,359 - BPHYT_RS05300 0.10 -0.7 1,221,359 - BPHYT_RS05300 0.10 +0.8 1,221,387 - BPHYT_RS05300 0.17 +0.1 1,221,472 - BPHYT_RS05300 0.38 -0.5 1,221,670 - BPHYT_RS05300 0.87 +1.5 1,221,691 - -0.6 1,221,693 - +0.3 1,221,766 + +2.4 1,221,845 - -0.7 1,222,318 - BPHYT_RS05305 0.55 -0.9 1,222,983 - +0.1 1,222,984 + +0.0 1,223,230 - BPHYT_RS05310 0.27 +0.6 1,223,348 - BPHYT_RS05310 0.40 +0.3 1,223,348 - BPHYT_RS05310 0.40 -0.4 1,223,404 + BPHYT_RS05310 0.46 -1.2 1,223,692 - BPHYT_RS05310 0.77 +0.1 1,223,702 + BPHYT_RS05310 0.79 +1.7 1,223,703 - BPHYT_RS05310 0.79 +0.5 1,223,703 - BPHYT_RS05310 0.79 -0.3 1,223,706 - BPHYT_RS05310 0.79 -1.6 1,223,706 - BPHYT_RS05310 0.79 -0.3
Or see this region's nucleotide sequence