Experiment: With vitamins t2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01270 and BPHYT_RS01275 are separated by 202 nucleotides BPHYT_RS01275 and BPHYT_RS01280 are separated by 254 nucleotides
BPHYT_RS01270: BPHYT_RS01270 - hypothetical protein, at 291,232 to 291,891
_RS01270
BPHYT_RS01275: BPHYT_RS01275 - DNA-directed DNA polymerase, at 292,094 to 293,251
_RS01275
BPHYT_RS01280: BPHYT_RS01280 - hypothetical protein, at 293,506 to 293,739
_RS01280
Position (kb) 292
293
294 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 291.203 kb on - strand at 291.293 kb on + strand at 291.293 kb on + strand at 291.293 kb on + strand at 291.294 kb on - strand at 291.305 kb on + strand, within BPHYT_RS01270 at 291.467 kb on - strand, within BPHYT_RS01270 at 291.501 kb on + strand, within BPHYT_RS01270 at 291.501 kb on + strand, within BPHYT_RS01270 at 291.502 kb on - strand, within BPHYT_RS01270 at 291.502 kb on - strand, within BPHYT_RS01270 at 291.594 kb on - strand, within BPHYT_RS01270 at 291.602 kb on + strand, within BPHYT_RS01270 at 291.603 kb on - strand, within BPHYT_RS01270 at 291.668 kb on + strand, within BPHYT_RS01270 at 291.669 kb on - strand, within BPHYT_RS01270 at 291.706 kb on - strand, within BPHYT_RS01270 at 291.861 kb on + strand at 291.861 kb on + strand at 291.932 kb on + strand at 292.057 kb on - strand at 292.080 kb on + strand at 292.184 kb on - strand at 292.184 kb on - strand at 292.260 kb on - strand, within BPHYT_RS01275 at 292.534 kb on - strand, within BPHYT_RS01275 at 292.534 kb on - strand, within BPHYT_RS01275 at 292.800 kb on - strand, within BPHYT_RS01275 at 292.863 kb on + strand, within BPHYT_RS01275 at 292.936 kb on - strand, within BPHYT_RS01275 at 292.936 kb on - strand, within BPHYT_RS01275 at 293.044 kb on - strand, within BPHYT_RS01275 at 293.076 kb on + strand, within BPHYT_RS01275 at 293.077 kb on - strand, within BPHYT_RS01275 at 293.338 kb on + strand at 293.339 kb on - strand at 293.340 kb on + strand at 293.340 kb on + strand at 293.341 kb on - strand at 293.341 kb on - strand at 293.354 kb on - strand at 293.354 kb on - strand at 293.460 kb on + strand at 293.489 kb on + strand at 293.687 kb on - strand, within BPHYT_RS01280 at 293.779 kb on + strand at 293.780 kb on - strand at 294.040 kb on + strand at 294.067 kb on - strand at 294.166 kb on + strand at 294.167 kb on - strand at 294.183 kb on - strand at 294.210 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction With vitamins t2 remove 291,203 - -1.7 291,293 + -0.1 291,293 + +0.0 291,293 + -0.3 291,294 - +0.5 291,305 + BPHYT_RS01270 0.11 +0.7 291,467 - BPHYT_RS01270 0.36 +1.4 291,501 + BPHYT_RS01270 0.41 +0.1 291,501 + BPHYT_RS01270 0.41 -0.1 291,502 - BPHYT_RS01270 0.41 -0.2 291,502 - BPHYT_RS01270 0.41 -0.4 291,594 - BPHYT_RS01270 0.55 +1.6 291,602 + BPHYT_RS01270 0.56 -0.4 291,603 - BPHYT_RS01270 0.56 -0.3 291,668 + BPHYT_RS01270 0.66 +1.3 291,669 - BPHYT_RS01270 0.66 +0.3 291,706 - BPHYT_RS01270 0.72 -0.3 291,861 + +0.8 291,861 + +0.6 291,932 + +0.1 292,057 - -0.3 292,080 + -0.5 292,184 - +0.1 292,184 - +0.2 292,260 - BPHYT_RS01275 0.14 -0.2 292,534 - BPHYT_RS01275 0.38 -0.7 292,534 - BPHYT_RS01275 0.38 -0.7 292,800 - BPHYT_RS01275 0.61 -0.4 292,863 + BPHYT_RS01275 0.66 -0.3 292,936 - BPHYT_RS01275 0.73 -0.0 292,936 - BPHYT_RS01275 0.73 +1.3 293,044 - BPHYT_RS01275 0.82 -1.7 293,076 + BPHYT_RS01275 0.85 -2.8 293,077 - BPHYT_RS01275 0.85 +0.3 293,338 + +1.9 293,339 - +1.4 293,340 + -0.3 293,340 + +0.3 293,341 - +0.7 293,341 - -0.2 293,354 - +0.0 293,354 - +0.3 293,460 + +0.5 293,489 + +1.0 293,687 - BPHYT_RS01280 0.77 +0.2 293,779 + -0.1 293,780 - -0.6 294,040 + -0.5 294,067 - -0.3 294,166 + +0.0 294,167 - +0.3 294,183 - +1.3 294,210 - -0.9
Or see this region's nucleotide sequence