Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS01275

Experiment: With vitamins t2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS01270 and BPHYT_RS01275 are separated by 202 nucleotidesBPHYT_RS01275 and BPHYT_RS01280 are separated by 254 nucleotides BPHYT_RS01270: BPHYT_RS01270 - hypothetical protein, at 291,232 to 291,891 _RS01270 BPHYT_RS01275: BPHYT_RS01275 - DNA-directed DNA polymerase, at 292,094 to 293,251 _RS01275 BPHYT_RS01280: BPHYT_RS01280 - hypothetical protein, at 293,506 to 293,739 _RS01280 Position (kb) 292 293 294Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 291.203 kb on - strandat 291.293 kb on + strandat 291.293 kb on + strandat 291.293 kb on + strandat 291.294 kb on - strandat 291.305 kb on + strand, within BPHYT_RS01270at 291.467 kb on - strand, within BPHYT_RS01270at 291.501 kb on + strand, within BPHYT_RS01270at 291.501 kb on + strand, within BPHYT_RS01270at 291.502 kb on - strand, within BPHYT_RS01270at 291.502 kb on - strand, within BPHYT_RS01270at 291.594 kb on - strand, within BPHYT_RS01270at 291.602 kb on + strand, within BPHYT_RS01270at 291.603 kb on - strand, within BPHYT_RS01270at 291.668 kb on + strand, within BPHYT_RS01270at 291.669 kb on - strand, within BPHYT_RS01270at 291.706 kb on - strand, within BPHYT_RS01270at 291.861 kb on + strandat 291.861 kb on + strandat 291.932 kb on + strandat 292.057 kb on - strandat 292.080 kb on + strandat 292.184 kb on - strandat 292.184 kb on - strandat 292.260 kb on - strand, within BPHYT_RS01275at 292.534 kb on - strand, within BPHYT_RS01275at 292.534 kb on - strand, within BPHYT_RS01275at 292.800 kb on - strand, within BPHYT_RS01275at 292.863 kb on + strand, within BPHYT_RS01275at 292.936 kb on - strand, within BPHYT_RS01275at 292.936 kb on - strand, within BPHYT_RS01275at 293.044 kb on - strand, within BPHYT_RS01275at 293.076 kb on + strand, within BPHYT_RS01275at 293.077 kb on - strand, within BPHYT_RS01275at 293.338 kb on + strandat 293.339 kb on - strandat 293.340 kb on + strandat 293.340 kb on + strandat 293.341 kb on - strandat 293.341 kb on - strandat 293.354 kb on - strandat 293.354 kb on - strandat 293.460 kb on + strandat 293.489 kb on + strandat 293.687 kb on - strand, within BPHYT_RS01280at 293.779 kb on + strandat 293.780 kb on - strandat 294.040 kb on + strandat 294.067 kb on - strandat 294.166 kb on + strandat 294.167 kb on - strandat 294.183 kb on - strandat 294.210 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction With vitamins t2
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291,203 - -1.7
291,293 + -0.1
291,293 + +0.0
291,293 + -0.3
291,294 - +0.5
291,305 + BPHYT_RS01270 0.11 +0.7
291,467 - BPHYT_RS01270 0.36 +1.4
291,501 + BPHYT_RS01270 0.41 +0.1
291,501 + BPHYT_RS01270 0.41 -0.1
291,502 - BPHYT_RS01270 0.41 -0.2
291,502 - BPHYT_RS01270 0.41 -0.4
291,594 - BPHYT_RS01270 0.55 +1.6
291,602 + BPHYT_RS01270 0.56 -0.4
291,603 - BPHYT_RS01270 0.56 -0.3
291,668 + BPHYT_RS01270 0.66 +1.3
291,669 - BPHYT_RS01270 0.66 +0.3
291,706 - BPHYT_RS01270 0.72 -0.3
291,861 + +0.8
291,861 + +0.6
291,932 + +0.1
292,057 - -0.3
292,080 + -0.5
292,184 - +0.1
292,184 - +0.2
292,260 - BPHYT_RS01275 0.14 -0.2
292,534 - BPHYT_RS01275 0.38 -0.7
292,534 - BPHYT_RS01275 0.38 -0.7
292,800 - BPHYT_RS01275 0.61 -0.4
292,863 + BPHYT_RS01275 0.66 -0.3
292,936 - BPHYT_RS01275 0.73 -0.0
292,936 - BPHYT_RS01275 0.73 +1.3
293,044 - BPHYT_RS01275 0.82 -1.7
293,076 + BPHYT_RS01275 0.85 -2.8
293,077 - BPHYT_RS01275 0.85 +0.3
293,338 + +1.9
293,339 - +1.4
293,340 + -0.3
293,340 + +0.3
293,341 - +0.7
293,341 - -0.2
293,354 - +0.0
293,354 - +0.3
293,460 + +0.5
293,489 + +1.0
293,687 - BPHYT_RS01280 0.77 +0.2
293,779 + -0.1
293,780 - -0.6
294,040 + -0.5
294,067 - -0.3
294,166 + +0.0
294,167 - +0.3
294,183 - +1.3
294,210 - -0.9

Or see this region's nucleotide sequence