Experiment: Putrescine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_30350 and AO356_30355 are separated by 55 nucleotides AO356_30355 and AO356_30360 are separated by 63 nucleotides AO356_30360 and AO356_30365 are separated by 49 nucleotides
AO356_30350: AO356_30350 - LysR family transcriptional regulator, at 7,084,537 to 7,085,469
_30350
AO356_30355: AO356_30355 - enoyl-CoA hydratase, at 7,085,525 to 7,086,319
_30355
AO356_30360: AO356_30360 - 3-hydroxypropionyl-CoA dehydratase, at 7,086,383 to 7,087,120
_30360
AO356_30365: AO356_30365 - CDP-6-deoxy-delta-3,4-glucoseen reductase, at 7,087,170 to 7,088,210
_30365
Position (kb) 7085
7086
7087 Strain fitness (log2 ratio) -2
-1
0
1
2 at 7084.593 kb on + strand at 7084.725 kb on + strand, within AO356_30350 at 7084.749 kb on + strand, within AO356_30350 at 7084.897 kb on + strand, within AO356_30350 at 7084.897 kb on + strand, within AO356_30350 at 7084.897 kb on + strand, within AO356_30350 at 7084.898 kb on - strand, within AO356_30350 at 7084.898 kb on - strand, within AO356_30350 at 7084.899 kb on + strand, within AO356_30350 at 7084.900 kb on - strand, within AO356_30350 at 7084.900 kb on - strand, within AO356_30350 at 7084.900 kb on - strand, within AO356_30350 at 7084.993 kb on + strand, within AO356_30350 at 7085.257 kb on + strand, within AO356_30350 at 7085.258 kb on - strand, within AO356_30350 at 7085.323 kb on + strand, within AO356_30350 at 7085.323 kb on + strand, within AO356_30350 at 7085.434 kb on + strand at 7085.447 kb on + strand at 7085.448 kb on - strand at 7085.526 kb on + strand at 7085.562 kb on + strand at 7085.562 kb on + strand at 7085.583 kb on + strand at 7085.583 kb on + strand at 7085.584 kb on - strand at 7085.584 kb on - strand at 7085.664 kb on + strand, within AO356_30355 at 7085.664 kb on + strand, within AO356_30355 at 7085.665 kb on - strand, within AO356_30355 at 7085.666 kb on + strand, within AO356_30355 at 7085.667 kb on - strand, within AO356_30355 at 7085.678 kb on + strand, within AO356_30355 at 7085.679 kb on - strand, within AO356_30355 at 7085.679 kb on - strand, within AO356_30355 at 7085.781 kb on - strand, within AO356_30355 at 7085.823 kb on - strand, within AO356_30355 at 7085.869 kb on - strand, within AO356_30355 at 7085.869 kb on - strand, within AO356_30355 at 7085.869 kb on - strand, within AO356_30355 at 7085.948 kb on - strand, within AO356_30355 at 7085.948 kb on - strand, within AO356_30355 at 7086.278 kb on + strand at 7086.279 kb on - strand at 7086.299 kb on - strand at 7086.322 kb on + strand at 7086.323 kb on - strand at 7086.323 kb on - strand at 7086.560 kb on + strand, within AO356_30360 at 7086.659 kb on + strand, within AO356_30360 at 7086.659 kb on + strand, within AO356_30360 at 7086.881 kb on - strand, within AO356_30360 at 7087.003 kb on + strand, within AO356_30360 at 7087.004 kb on - strand, within AO356_30360 at 7087.004 kb on - strand, within AO356_30360 at 7087.015 kb on + strand, within AO356_30360 at 7087.016 kb on - strand, within AO356_30360 at 7087.104 kb on - strand at 7087.104 kb on - strand at 7087.129 kb on - strand at 7087.129 kb on - strand at 7087.143 kb on - strand at 7087.172 kb on - strand at 7087.172 kb on - strand at 7087.292 kb on - strand, within AO356_30365
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine (C) remove 7,084,593 + +0.3 7,084,725 + AO356_30350 0.20 -0.5 7,084,749 + AO356_30350 0.23 +0.7 7,084,897 + AO356_30350 0.39 +0.0 7,084,897 + AO356_30350 0.39 +0.6 7,084,897 + AO356_30350 0.39 +0.1 7,084,898 - AO356_30350 0.39 -0.7 7,084,898 - AO356_30350 0.39 -0.6 7,084,899 + AO356_30350 0.39 -0.5 7,084,900 - AO356_30350 0.39 -0.2 7,084,900 - AO356_30350 0.39 +0.6 7,084,900 - AO356_30350 0.39 +0.4 7,084,993 + AO356_30350 0.49 +0.3 7,085,257 + AO356_30350 0.77 +0.4 7,085,258 - AO356_30350 0.77 -0.2 7,085,323 + AO356_30350 0.84 +0.5 7,085,323 + AO356_30350 0.84 -0.4 7,085,434 + -1.7 7,085,447 + -0.6 7,085,448 - +0.1 7,085,526 + +0.6 7,085,562 + +0.2 7,085,562 + +1.3 7,085,583 + +0.3 7,085,583 + +1.6 7,085,584 - -0.1 7,085,584 - +0.1 7,085,664 + AO356_30355 0.17 +0.1 7,085,664 + AO356_30355 0.17 -0.8 7,085,665 - AO356_30355 0.18 -1.0 7,085,666 + AO356_30355 0.18 +0.7 7,085,667 - AO356_30355 0.18 -0.2 7,085,678 + AO356_30355 0.19 +0.1 7,085,679 - AO356_30355 0.19 +0.0 7,085,679 - AO356_30355 0.19 +1.4 7,085,781 - AO356_30355 0.32 +0.4 7,085,823 - AO356_30355 0.37 +0.5 7,085,869 - AO356_30355 0.43 -2.5 7,085,869 - AO356_30355 0.43 +1.9 7,085,869 - AO356_30355 0.43 -0.2 7,085,948 - AO356_30355 0.53 +0.0 7,085,948 - AO356_30355 0.53 +0.0 7,086,278 + -0.4 7,086,279 - -0.3 7,086,299 - -0.9 7,086,322 + +0.6 7,086,323 - +1.1 7,086,323 - +1.1 7,086,560 + AO356_30360 0.24 +1.1 7,086,659 + AO356_30360 0.37 -0.9 7,086,659 + AO356_30360 0.37 -0.7 7,086,881 - AO356_30360 0.67 -0.8 7,087,003 + AO356_30360 0.84 -0.2 7,087,004 - AO356_30360 0.84 +0.4 7,087,004 - AO356_30360 0.84 -1.3 7,087,015 + AO356_30360 0.86 -1.4 7,087,016 - AO356_30360 0.86 -0.4 7,087,104 - +0.8 7,087,104 - -0.4 7,087,129 - +0.1 7,087,129 - -0.2 7,087,143 - +0.7 7,087,172 - +0.8 7,087,172 - -0.8 7,087,292 - AO356_30365 0.12 -1.2
Or see this region's nucleotide sequence