Experiment: Putrescine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_03885 and AO356_03890 are separated by 330 nucleotides AO356_03890 and AO356_03895 are separated by 64 nucleotides
AO356_03885: AO356_03885 - beta-ketoacyl-ACP synthase, at 858,961 to 859,887
_03885
AO356_03890: AO356_03890 - glycosyl transferase family 2, at 860,218 to 863,112
_03890
AO356_03895: AO356_03895 - glycosyl transferase family 2, at 863,177 to 866,758
_03895
Position (kb) 860
861
862
863
864 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 859.250 kb on - strand, within AO356_03885 at 859.523 kb on + strand, within AO356_03885 at 859.524 kb on - strand, within AO356_03885 at 859.524 kb on - strand, within AO356_03885 at 859.524 kb on - strand, within AO356_03885 at 859.524 kb on - strand, within AO356_03885 at 859.524 kb on - strand, within AO356_03885 at 859.534 kb on + strand, within AO356_03885 at 859.534 kb on + strand, within AO356_03885 at 859.534 kb on + strand, within AO356_03885 at 859.534 kb on + strand, within AO356_03885 at 859.534 kb on + strand, within AO356_03885 at 859.534 kb on + strand, within AO356_03885 at 859.534 kb on + strand, within AO356_03885 at 859.534 kb on + strand, within AO356_03885 at 859.534 kb on + strand, within AO356_03885 at 859.534 kb on + strand, within AO356_03885 at 859.534 kb on + strand, within AO356_03885 at 859.535 kb on - strand, within AO356_03885 at 859.535 kb on - strand, within AO356_03885 at 859.535 kb on - strand, within AO356_03885 at 859.535 kb on - strand, within AO356_03885 at 859.535 kb on - strand, within AO356_03885 at 859.535 kb on - strand, within AO356_03885 at 859.538 kb on + strand, within AO356_03885 at 859.538 kb on + strand, within AO356_03885 at 859.539 kb on - strand, within AO356_03885 at 859.539 kb on - strand, within AO356_03885 at 859.539 kb on - strand, within AO356_03885 at 859.558 kb on + strand, within AO356_03885 at 859.558 kb on + strand, within AO356_03885 at 859.559 kb on - strand, within AO356_03885 at 859.559 kb on - strand, within AO356_03885 at 859.559 kb on - strand, within AO356_03885 at 859.559 kb on - strand, within AO356_03885 at 859.560 kb on + strand, within AO356_03885 at 859.560 kb on + strand, within AO356_03885 at 859.832 kb on + strand at 859.832 kb on + strand at 859.832 kb on + strand at 859.833 kb on - strand at 859.833 kb on - strand at 859.833 kb on - strand at 859.833 kb on - strand at 859.836 kb on + strand at 859.859 kb on + strand at 859.859 kb on + strand at 859.859 kb on + strand at 859.859 kb on + strand at 859.859 kb on + strand at 859.859 kb on + strand at 859.860 kb on - strand at 859.860 kb on - strand at 859.860 kb on - strand at 859.860 kb on - strand at 859.860 kb on - strand at 859.877 kb on - strand at 859.915 kb on + strand at 859.916 kb on - strand at 859.916 kb on - strand at 859.916 kb on - strand at 860.013 kb on + strand at 860.013 kb on + strand at 860.014 kb on - strand at 860.018 kb on + strand at 860.018 kb on + strand at 860.019 kb on - strand at 860.019 kb on - strand at 860.036 kb on + strand at 860.037 kb on - strand at 860.043 kb on + strand at 860.043 kb on + strand at 860.043 kb on + strand at 860.043 kb on + strand at 860.043 kb on + strand at 860.043 kb on + strand at 860.043 kb on + strand at 860.043 kb on + strand at 860.044 kb on - strand at 860.044 kb on - strand at 860.091 kb on + strand at 860.092 kb on - strand at 860.116 kb on + strand at 860.180 kb on + strand at 860.181 kb on - strand at 860.220 kb on - strand at 860.242 kb on + strand at 860.300 kb on + strand at 860.300 kb on + strand at 860.300 kb on + strand at 860.300 kb on + strand at 860.300 kb on + strand at 860.301 kb on - strand at 860.301 kb on - strand at 860.421 kb on - strand at 860.488 kb on + strand at 860.488 kb on + strand at 860.488 kb on + strand at 860.488 kb on + strand at 860.489 kb on - strand at 860.489 kb on - strand at 860.489 kb on - strand at 860.489 kb on - strand at 860.582 kb on + strand, within AO356_03890 at 860.582 kb on + strand, within AO356_03890 at 860.583 kb on - strand, within AO356_03890 at 860.664 kb on + strand, within AO356_03890 at 860.664 kb on + strand, within AO356_03890 at 860.664 kb on + strand, within AO356_03890 at 860.665 kb on - strand, within AO356_03890 at 860.665 kb on - strand, within AO356_03890 at 860.665 kb on - strand, within AO356_03890 at 860.665 kb on - strand, within AO356_03890 at 860.665 kb on - strand, within AO356_03890 at 860.665 kb on - strand, within AO356_03890 at 860.790 kb on - strand, within AO356_03890 at 860.790 kb on - strand, within AO356_03890 at 860.944 kb on + strand, within AO356_03890 at 860.944 kb on + strand, within AO356_03890 at 860.944 kb on + strand, within AO356_03890 at 860.944 kb on + strand, within AO356_03890 at 860.945 kb on - strand, within AO356_03890 at 860.945 kb on - strand, within AO356_03890 at 860.945 kb on - strand, within AO356_03890 at 860.945 kb on - strand, within AO356_03890 at 860.952 kb on - strand, within AO356_03890 at 860.961 kb on - strand, within AO356_03890 at 861.072 kb on + strand, within AO356_03890 at 861.073 kb on - strand, within AO356_03890 at 861.319 kb on + strand, within AO356_03890 at 861.575 kb on + strand, within AO356_03890 at 861.575 kb on + strand, within AO356_03890 at 861.575 kb on + strand, within AO356_03890 at 861.575 kb on + strand, within AO356_03890 at 861.576 kb on - strand, within AO356_03890 at 861.576 kb on - strand, within AO356_03890 at 861.576 kb on - strand, within AO356_03890 at 861.621 kb on + strand, within AO356_03890 at 861.622 kb on - strand, within AO356_03890 at 861.622 kb on - strand, within AO356_03890 at 861.677 kb on + strand, within AO356_03890 at 861.678 kb on - strand, within AO356_03890 at 861.782 kb on + strand, within AO356_03890 at 861.783 kb on - strand, within AO356_03890 at 861.783 kb on - strand, within AO356_03890 at 861.936 kb on - strand, within AO356_03890 at 862.001 kb on + strand, within AO356_03890 at 862.002 kb on - strand, within AO356_03890 at 862.002 kb on - strand, within AO356_03890 at 862.002 kb on - strand, within AO356_03890 at 862.002 kb on - strand, within AO356_03890 at 862.184 kb on + strand, within AO356_03890 at 862.184 kb on + strand, within AO356_03890 at 862.184 kb on + strand, within AO356_03890 at 862.184 kb on + strand, within AO356_03890 at 862.185 kb on - strand, within AO356_03890 at 862.185 kb on - strand, within AO356_03890 at 862.185 kb on - strand, within AO356_03890 at 862.202 kb on + strand, within AO356_03890 at 862.202 kb on + strand, within AO356_03890 at 862.202 kb on + strand, within AO356_03890 at 862.203 kb on - strand, within AO356_03890 at 862.203 kb on - strand, within AO356_03890 at 862.322 kb on + strand, within AO356_03890 at 862.322 kb on + strand, within AO356_03890 at 862.322 kb on + strand, within AO356_03890 at 862.322 kb on + strand, within AO356_03890 at 862.322 kb on + strand, within AO356_03890 at 862.323 kb on - strand, within AO356_03890 at 862.323 kb on - strand, within AO356_03890 at 862.339 kb on - strand, within AO356_03890 at 862.455 kb on + strand, within AO356_03890 at 862.472 kb on + strand, within AO356_03890 at 862.517 kb on + strand, within AO356_03890 at 862.518 kb on - strand, within AO356_03890 at 862.518 kb on - strand, within AO356_03890 at 862.571 kb on + strand, within AO356_03890 at 862.572 kb on - strand, within AO356_03890 at 862.670 kb on + strand, within AO356_03890 at 862.700 kb on + strand, within AO356_03890 at 862.701 kb on - strand, within AO356_03890 at 862.701 kb on - strand, within AO356_03890 at 862.701 kb on - strand, within AO356_03890 at 862.704 kb on - strand, within AO356_03890 at 862.704 kb on - strand, within AO356_03890 at 862.704 kb on - strand, within AO356_03890 at 862.704 kb on - strand, within AO356_03890 at 862.845 kb on - strand at 862.916 kb on + strand at 862.916 kb on + strand at 862.917 kb on - strand at 862.917 kb on - strand at 862.944 kb on + strand at 862.944 kb on + strand at 863.062 kb on - strand at 863.112 kb on + strand at 863.112 kb on + strand at 863.113 kb on - strand at 863.113 kb on - strand at 863.123 kb on + strand at 863.206 kb on - strand at 863.230 kb on + strand at 863.231 kb on - strand at 863.255 kb on + strand at 863.256 kb on - strand at 863.256 kb on - strand at 863.303 kb on - strand at 863.351 kb on - strand at 863.415 kb on + strand at 863.415 kb on + strand at 863.416 kb on - strand at 863.455 kb on + strand at 863.456 kb on - strand at 863.456 kb on - strand at 863.456 kb on - strand at 863.456 kb on - strand at 863.456 kb on - strand at 863.551 kb on + strand, within AO356_03895 at 863.551 kb on + strand, within AO356_03895 at 863.551 kb on + strand, within AO356_03895 at 863.551 kb on + strand, within AO356_03895 at 863.552 kb on - strand, within AO356_03895 at 863.553 kb on + strand, within AO356_03895 at 863.553 kb on + strand, within AO356_03895 at 863.553 kb on + strand, within AO356_03895 at 863.553 kb on + strand, within AO356_03895 at 863.554 kb on - strand, within AO356_03895 at 863.554 kb on - strand, within AO356_03895 at 863.554 kb on - strand, within AO356_03895 at 863.554 kb on - strand, within AO356_03895 at 863.807 kb on + strand, within AO356_03895 at 863.807 kb on + strand, within AO356_03895 at 863.807 kb on + strand, within AO356_03895 at 863.840 kb on + strand, within AO356_03895 at 863.840 kb on + strand, within AO356_03895 at 863.841 kb on - strand, within AO356_03895 at 863.866 kb on + strand, within AO356_03895 at 863.867 kb on - strand, within AO356_03895 at 863.867 kb on - strand, within AO356_03895 at 863.867 kb on - strand, within AO356_03895 at 863.907 kb on + strand, within AO356_03895 at 863.907 kb on + strand, within AO356_03895 at 863.907 kb on + strand, within AO356_03895 at 863.907 kb on + strand, within AO356_03895 at 863.907 kb on + strand, within AO356_03895 at 863.907 kb on + strand, within AO356_03895 at 863.908 kb on - strand, within AO356_03895 at 863.908 kb on - strand, within AO356_03895 at 863.908 kb on - strand, within AO356_03895 at 863.908 kb on - strand, within AO356_03895 at 863.908 kb on - strand, within AO356_03895 at 863.908 kb on - strand, within AO356_03895 at 863.908 kb on - strand, within AO356_03895 at 863.943 kb on + strand, within AO356_03895 at 863.943 kb on + strand, within AO356_03895 at 863.944 kb on - strand, within AO356_03895 at 863.974 kb on + strand, within AO356_03895 at 863.975 kb on - strand, within AO356_03895 at 863.986 kb on - strand, within AO356_03895 at 863.986 kb on - strand, within AO356_03895 at 863.986 kb on - strand, within AO356_03895 at 864.047 kb on - strand, within AO356_03895 at 864.047 kb on - strand, within AO356_03895 at 864.051 kb on + strand, within AO356_03895 at 864.051 kb on + strand, within AO356_03895 at 864.052 kb on - strand, within AO356_03895 at 864.052 kb on - strand, within AO356_03895 at 864.096 kb on - strand, within AO356_03895
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine (C) remove 859,250 - AO356_03885 0.31 +0.3 859,523 + AO356_03885 0.61 +0.3 859,524 - AO356_03885 0.61 +0.7 859,524 - AO356_03885 0.61 +0.6 859,524 - AO356_03885 0.61 +0.7 859,524 - AO356_03885 0.61 +1.0 859,524 - AO356_03885 0.61 +0.4 859,534 + AO356_03885 0.62 -0.1 859,534 + AO356_03885 0.62 +1.0 859,534 + AO356_03885 0.62 +0.6 859,534 + AO356_03885 0.62 -0.0 859,534 + AO356_03885 0.62 +0.7 859,534 + AO356_03885 0.62 +1.5 859,534 + AO356_03885 0.62 +1.7 859,534 + AO356_03885 0.62 +0.6 859,534 + AO356_03885 0.62 +0.4 859,534 + AO356_03885 0.62 +0.4 859,534 + AO356_03885 0.62 -0.1 859,535 - AO356_03885 0.62 +0.9 859,535 - AO356_03885 0.62 +1.1 859,535 - AO356_03885 0.62 +0.7 859,535 - AO356_03885 0.62 -0.0 859,535 - AO356_03885 0.62 +1.3 859,535 - AO356_03885 0.62 +0.8 859,538 + AO356_03885 0.62 +0.7 859,538 + AO356_03885 0.62 +0.6 859,539 - AO356_03885 0.62 +1.0 859,539 - AO356_03885 0.62 +1.1 859,539 - AO356_03885 0.62 +1.5 859,558 + AO356_03885 0.64 +1.2 859,558 + AO356_03885 0.64 +0.3 859,559 - AO356_03885 0.65 -0.2 859,559 - AO356_03885 0.65 +0.9 859,559 - AO356_03885 0.65 -0.4 859,559 - AO356_03885 0.65 +1.0 859,560 + AO356_03885 0.65 +1.2 859,560 + AO356_03885 0.65 +1.6 859,832 + +1.6 859,832 + +0.9 859,832 + +0.2 859,833 - +1.6 859,833 - +1.4 859,833 - +0.7 859,833 - +1.4 859,836 + +1.6 859,859 + +0.8 859,859 + +0.6 859,859 + +0.9 859,859 + +0.7 859,859 + +1.0 859,859 + +0.6 859,860 - +0.7 859,860 - +0.8 859,860 - +1.0 859,860 - +0.5 859,860 - +1.1 859,877 - +0.5 859,915 + +1.0 859,916 - -1.1 859,916 - -0.8 859,916 - -1.2 860,013 + +0.9 860,013 + +0.2 860,014 - -0.2 860,018 + -0.2 860,018 + +1.0 860,019 - -0.4 860,019 - -0.3 860,036 + +0.5 860,037 - -0.6 860,043 + +0.7 860,043 + +0.2 860,043 + +0.6 860,043 + +2.9 860,043 + +1.4 860,043 + +0.7 860,043 + +1.7 860,043 + -0.8 860,044 - -0.6 860,044 - -1.9 860,091 + +0.8 860,092 - -1.0 860,116 + +2.1 860,180 + +0.8 860,181 - +1.6 860,220 - -0.3 860,242 + -1.9 860,300 + +0.3 860,300 + +0.4 860,300 + +1.0 860,300 + +0.3 860,300 + +0.1 860,301 - -1.9 860,301 - +0.5 860,421 - -0.2 860,488 + +0.5 860,488 + +0.2 860,488 + +0.7 860,488 + -0.2 860,489 - +0.7 860,489 - -0.7 860,489 - -0.7 860,489 - -0.3 860,582 + AO356_03890 0.13 +0.8 860,582 + AO356_03890 0.13 +0.7 860,583 - AO356_03890 0.13 +0.0 860,664 + AO356_03890 0.15 +0.4 860,664 + AO356_03890 0.15 -0.8 860,664 + AO356_03890 0.15 +0.6 860,665 - AO356_03890 0.15 -0.7 860,665 - AO356_03890 0.15 +0.8 860,665 - AO356_03890 0.15 +0.8 860,665 - AO356_03890 0.15 -0.9 860,665 - AO356_03890 0.15 -0.4 860,665 - AO356_03890 0.15 +0.8 860,790 - AO356_03890 0.20 +0.3 860,790 - AO356_03890 0.20 +0.0 860,944 + AO356_03890 0.25 +0.1 860,944 + AO356_03890 0.25 +0.3 860,944 + AO356_03890 0.25 +0.0 860,944 + AO356_03890 0.25 -0.3 860,945 - AO356_03890 0.25 -0.4 860,945 - AO356_03890 0.25 +0.3 860,945 - AO356_03890 0.25 +0.8 860,945 - AO356_03890 0.25 +0.1 860,952 - AO356_03890 0.25 -0.9 860,961 - AO356_03890 0.26 +0.4 861,072 + AO356_03890 0.29 -0.2 861,073 - AO356_03890 0.30 +0.8 861,319 + AO356_03890 0.38 -0.2 861,575 + AO356_03890 0.47 +0.1 861,575 + AO356_03890 0.47 -1.6 861,575 + AO356_03890 0.47 -1.4 861,575 + AO356_03890 0.47 +0.8 861,576 - AO356_03890 0.47 -0.1 861,576 - AO356_03890 0.47 -0.8 861,576 - AO356_03890 0.47 +1.1 861,621 + AO356_03890 0.48 -0.7 861,622 - AO356_03890 0.48 +1.1 861,622 - AO356_03890 0.48 +0.2 861,677 + AO356_03890 0.50 -0.7 861,678 - AO356_03890 0.50 +0.2 861,782 + AO356_03890 0.54 +0.5 861,783 - AO356_03890 0.54 +0.3 861,783 - AO356_03890 0.54 +0.3 861,936 - AO356_03890 0.59 -0.6 862,001 + AO356_03890 0.62 -0.0 862,002 - AO356_03890 0.62 -0.1 862,002 - AO356_03890 0.62 +0.8 862,002 - AO356_03890 0.62 +0.0 862,002 - AO356_03890 0.62 +0.0 862,184 + AO356_03890 0.68 +1.0 862,184 + AO356_03890 0.68 -0.3 862,184 + AO356_03890 0.68 +0.5 862,184 + AO356_03890 0.68 +0.2 862,185 - AO356_03890 0.68 +0.9 862,185 - AO356_03890 0.68 -0.2 862,185 - AO356_03890 0.68 +0.4 862,202 + AO356_03890 0.69 +0.8 862,202 + AO356_03890 0.69 +1.4 862,202 + AO356_03890 0.69 +0.8 862,203 - AO356_03890 0.69 -1.7 862,203 - AO356_03890 0.69 -0.5 862,322 + AO356_03890 0.73 -0.1 862,322 + AO356_03890 0.73 +0.8 862,322 + AO356_03890 0.73 +0.5 862,322 + AO356_03890 0.73 +0.9 862,322 + AO356_03890 0.73 -0.0 862,323 - AO356_03890 0.73 +0.4 862,323 - AO356_03890 0.73 -0.7 862,339 - AO356_03890 0.73 +0.6 862,455 + AO356_03890 0.77 -0.4 862,472 + AO356_03890 0.78 +0.1 862,517 + AO356_03890 0.79 -0.1 862,518 - AO356_03890 0.79 +0.5 862,518 - AO356_03890 0.79 -0.1 862,571 + AO356_03890 0.81 -1.0 862,572 - AO356_03890 0.81 -0.3 862,670 + AO356_03890 0.85 +0.3 862,700 + AO356_03890 0.86 +0.2 862,701 - AO356_03890 0.86 -0.5 862,701 - AO356_03890 0.86 +0.9 862,701 - AO356_03890 0.86 +0.6 862,704 - AO356_03890 0.86 +0.2 862,704 - AO356_03890 0.86 -0.0 862,704 - AO356_03890 0.86 -1.1 862,704 - AO356_03890 0.86 -1.1 862,845 - -0.2 862,916 + +0.8 862,916 + +0.4 862,917 - -0.1 862,917 - -0.0 862,944 + +0.6 862,944 + +1.3 863,062 - +1.6 863,112 + +0.8 863,112 + +0.4 863,113 - +0.4 863,113 - -0.9 863,123 + +0.5 863,206 - +0.3 863,230 + +0.9 863,231 - +0.3 863,255 + -0.0 863,256 - -0.2 863,256 - +1.6 863,303 - +0.3 863,351 - +0.4 863,415 + -0.5 863,415 + +0.3 863,416 - +0.6 863,455 + -0.5 863,456 - +0.0 863,456 - +0.7 863,456 - +0.6 863,456 - +0.3 863,456 - +0.8 863,551 + AO356_03895 0.10 +0.7 863,551 + AO356_03895 0.10 +0.6 863,551 + AO356_03895 0.10 -0.8 863,551 + AO356_03895 0.10 +0.9 863,552 - AO356_03895 0.10 -0.8 863,553 + AO356_03895 0.10 -0.4 863,553 + AO356_03895 0.10 -1.2 863,553 + AO356_03895 0.10 +0.3 863,553 + AO356_03895 0.10 -0.9 863,554 - AO356_03895 0.11 -0.4 863,554 - AO356_03895 0.11 +0.3 863,554 - AO356_03895 0.11 +1.2 863,554 - AO356_03895 0.11 +1.8 863,807 + AO356_03895 0.18 -1.0 863,807 + AO356_03895 0.18 -0.6 863,807 + AO356_03895 0.18 +0.8 863,840 + AO356_03895 0.19 -0.4 863,840 + AO356_03895 0.19 +0.6 863,841 - AO356_03895 0.19 -1.8 863,866 + AO356_03895 0.19 -0.0 863,867 - AO356_03895 0.19 -0.2 863,867 - AO356_03895 0.19 -0.5 863,867 - AO356_03895 0.19 +1.0 863,907 + AO356_03895 0.20 +0.1 863,907 + AO356_03895 0.20 -2.6 863,907 + AO356_03895 0.20 -0.1 863,907 + AO356_03895 0.20 -0.2 863,907 + AO356_03895 0.20 +0.3 863,907 + AO356_03895 0.20 +0.7 863,908 - AO356_03895 0.20 +0.7 863,908 - AO356_03895 0.20 +0.9 863,908 - AO356_03895 0.20 +0.6 863,908 - AO356_03895 0.20 +0.8 863,908 - AO356_03895 0.20 -0.8 863,908 - AO356_03895 0.20 +0.1 863,908 - AO356_03895 0.20 -0.3 863,943 + AO356_03895 0.21 +1.1 863,943 + AO356_03895 0.21 +0.4 863,944 - AO356_03895 0.21 -2.7 863,974 + AO356_03895 0.22 +0.1 863,975 - AO356_03895 0.22 -0.5 863,986 - AO356_03895 0.23 -0.4 863,986 - AO356_03895 0.23 +1.7 863,986 - AO356_03895 0.23 -1.1 864,047 - AO356_03895 0.24 -0.2 864,047 - AO356_03895 0.24 -1.1 864,051 + AO356_03895 0.24 -0.2 864,051 + AO356_03895 0.24 +1.0 864,052 - AO356_03895 0.24 +0.4 864,052 - AO356_03895 0.24 +1.0 864,096 - AO356_03895 0.26 +0.6
Or see this region's nucleotide sequence