Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03065

Experiment: Putrescine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_03055 and AO356_03060 are separated by 0 nucleotidesAO356_03060 and AO356_03065 overlap by 4 nucleotidesAO356_03065 and AO356_03070 are separated by 163 nucleotides AO356_03055: AO356_03055 - hypothetical protein, at 682,060 to 685,008 _03055 AO356_03060: AO356_03060 - GAF domain-containing protein, at 685,009 to 685,491 _03060 AO356_03065: AO356_03065 - AAA family ATPase, at 685,488 to 686,378 _03065 AO356_03070: AO356_03070 - histidine kinase, at 686,542 to 688,863 _03070 Position (kb) 685 686 687Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 684.526 kb on + strand, within AO356_03055at 684.526 kb on + strand, within AO356_03055at 684.526 kb on + strand, within AO356_03055at 684.526 kb on + strand, within AO356_03055at 684.527 kb on - strand, within AO356_03055at 684.544 kb on + strand, within AO356_03055at 684.544 kb on + strand, within AO356_03055at 684.545 kb on - strand, within AO356_03055at 684.545 kb on - strand, within AO356_03055at 684.589 kb on + strand, within AO356_03055at 684.589 kb on + strand, within AO356_03055at 684.589 kb on + strand, within AO356_03055at 684.590 kb on - strand, within AO356_03055at 684.590 kb on - strand, within AO356_03055at 684.590 kb on - strand, within AO356_03055at 684.590 kb on - strand, within AO356_03055at 684.590 kb on - strand, within AO356_03055at 684.590 kb on - strand, within AO356_03055at 684.590 kb on - strand, within AO356_03055at 684.808 kb on + strandat 684.808 kb on + strandat 684.808 kb on + strandat 684.808 kb on + strandat 684.809 kb on - strandat 684.916 kb on + strandat 684.916 kb on + strandat 684.916 kb on + strandat 685.034 kb on - strandat 685.075 kb on - strand, within AO356_03060at 685.329 kb on - strand, within AO356_03060at 685.329 kb on - strand, within AO356_03060at 685.329 kb on - strand, within AO356_03060at 685.540 kb on + strandat 685.697 kb on - strand, within AO356_03065at 685.843 kb on + strand, within AO356_03065at 685.843 kb on + strand, within AO356_03065at 685.843 kb on + strand, within AO356_03065at 685.843 kb on + strand, within AO356_03065at 685.844 kb on - strand, within AO356_03065at 685.844 kb on - strand, within AO356_03065at 685.844 kb on - strand, within AO356_03065at 685.844 kb on - strand, within AO356_03065at 686.236 kb on + strand, within AO356_03065at 686.404 kb on + strandat 686.404 kb on + strandat 686.405 kb on - strandat 686.405 kb on - strandat 686.405 kb on - strandat 686.405 kb on - strandat 686.405 kb on - strandat 686.405 kb on - strandat 686.405 kb on - strandat 686.450 kb on + strandat 686.450 kb on + strandat 686.451 kb on - strandat 686.462 kb on + strandat 686.462 kb on + strandat 686.462 kb on + strandat 686.462 kb on + strandat 686.462 kb on + strandat 686.462 kb on + strandat 686.462 kb on + strandat 686.462 kb on + strandat 686.462 kb on + strandat 686.463 kb on - strandat 686.463 kb on - strandat 686.463 kb on - strandat 686.463 kb on - strandat 686.463 kb on - strandat 686.499 kb on + strandat 686.499 kb on + strandat 686.499 kb on + strandat 686.499 kb on + strandat 686.499 kb on + strandat 686.500 kb on - strandat 686.500 kb on - strandat 686.524 kb on + strandat 686.524 kb on + strandat 686.525 kb on - strandat 686.525 kb on - strandat 686.525 kb on - strandat 686.572 kb on + strandat 686.572 kb on + strandat 686.572 kb on + strandat 686.573 kb on - strandat 686.574 kb on + strandat 686.575 kb on - strandat 686.575 kb on - strandat 686.651 kb on - strandat 686.651 kb on - strandat 686.731 kb on + strandat 686.731 kb on + strandat 686.731 kb on + strandat 686.731 kb on + strandat 686.731 kb on + strandat 686.732 kb on - strandat 686.732 kb on - strandat 686.732 kb on - strandat 686.823 kb on + strand, within AO356_03070at 686.824 kb on - strand, within AO356_03070at 686.824 kb on - strand, within AO356_03070at 686.923 kb on + strand, within AO356_03070at 686.924 kb on - strand, within AO356_03070at 686.980 kb on + strand, within AO356_03070at 686.980 kb on + strand, within AO356_03070at 686.980 kb on + strand, within AO356_03070at 686.980 kb on + strand, within AO356_03070at 686.981 kb on - strand, within AO356_03070at 686.981 kb on - strand, within AO356_03070at 686.981 kb on - strand, within AO356_03070at 687.079 kb on + strand, within AO356_03070at 687.079 kb on + strand, within AO356_03070at 687.080 kb on - strand, within AO356_03070at 687.080 kb on - strand, within AO356_03070at 687.080 kb on - strand, within AO356_03070at 687.080 kb on - strand, within AO356_03070at 687.235 kb on - strand, within AO356_03070at 687.235 kb on - strand, within AO356_03070at 687.286 kb on + strand, within AO356_03070at 687.286 kb on + strand, within AO356_03070

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (C)
remove
684,526 + AO356_03055 0.84 +0.5
684,526 + AO356_03055 0.84 -0.4
684,526 + AO356_03055 0.84 +1.4
684,526 + AO356_03055 0.84 +1.1
684,527 - AO356_03055 0.84 +0.2
684,544 + AO356_03055 0.84 -0.3
684,544 + AO356_03055 0.84 +0.7
684,545 - AO356_03055 0.84 -0.5
684,545 - AO356_03055 0.84 +0.6
684,589 + AO356_03055 0.86 +0.7
684,589 + AO356_03055 0.86 +0.8
684,589 + AO356_03055 0.86 -0.0
684,590 - AO356_03055 0.86 -0.9
684,590 - AO356_03055 0.86 -0.2
684,590 - AO356_03055 0.86 +0.8
684,590 - AO356_03055 0.86 +0.6
684,590 - AO356_03055 0.86 -0.2
684,590 - AO356_03055 0.86 +0.4
684,590 - AO356_03055 0.86 -3.0
684,808 + +1.9
684,808 + +1.2
684,808 + +0.5
684,808 + +1.1
684,809 - -0.1
684,916 + -0.2
684,916 + +1.1
684,916 + +1.0
685,034 - +0.5
685,075 - AO356_03060 0.14 -0.8
685,329 - AO356_03060 0.66 +1.3
685,329 - AO356_03060 0.66 +1.4
685,329 - AO356_03060 0.66 +0.1
685,540 + +1.9
685,697 - AO356_03065 0.23 -1.7
685,843 + AO356_03065 0.40 +0.9
685,843 + AO356_03065 0.40 +1.3
685,843 + AO356_03065 0.40 +1.3
685,843 + AO356_03065 0.40 +1.4
685,844 - AO356_03065 0.40 -0.3
685,844 - AO356_03065 0.40 +0.2
685,844 - AO356_03065 0.40 -1.4
685,844 - AO356_03065 0.40 +0.5
686,236 + AO356_03065 0.84 +1.3
686,404 + +1.1
686,404 + +3.0
686,405 - -0.1
686,405 - -0.3
686,405 - -1.4
686,405 - -1.9
686,405 - -2.5
686,405 - -0.8
686,405 - -1.2
686,450 + +0.4
686,450 + +1.0
686,451 - -1.0
686,462 + +1.0
686,462 + +0.8
686,462 + +0.5
686,462 + +1.1
686,462 + +1.9
686,462 + +1.8
686,462 + +1.0
686,462 + +1.6
686,462 + +1.3
686,463 - +0.5
686,463 - -1.6
686,463 - -1.0
686,463 - -0.3
686,463 - -1.0
686,499 + +1.6
686,499 + +1.0
686,499 + +0.7
686,499 + +1.0
686,499 + +2.1
686,500 - -1.4
686,500 - -1.2
686,524 + +1.8
686,524 + +0.9
686,525 - -2.7
686,525 - -0.7
686,525 - -3.0
686,572 + -1.8
686,572 + -3.7
686,572 + -3.3
686,573 - -1.5
686,574 + -1.3
686,575 - -1.3
686,575 - -2.4
686,651 - -2.1
686,651 - -3.8
686,731 + -2.4
686,731 + -2.0
686,731 + -2.1
686,731 + -1.9
686,731 + -2.2
686,732 - -2.3
686,732 - -3.2
686,732 - -3.7
686,823 + AO356_03070 0.12 -2.5
686,824 - AO356_03070 0.12 -1.5
686,824 - AO356_03070 0.12 -1.6
686,923 + AO356_03070 0.16 -2.6
686,924 - AO356_03070 0.16 -0.8
686,980 + AO356_03070 0.19 -1.7
686,980 + AO356_03070 0.19 -1.8
686,980 + AO356_03070 0.19 -1.7
686,980 + AO356_03070 0.19 -2.2
686,981 - AO356_03070 0.19 -1.2
686,981 - AO356_03070 0.19 -4.0
686,981 - AO356_03070 0.19 -1.8
687,079 + AO356_03070 0.23 -3.1
687,079 + AO356_03070 0.23 -0.7
687,080 - AO356_03070 0.23 -2.5
687,080 - AO356_03070 0.23 -1.0
687,080 - AO356_03070 0.23 -1.1
687,080 - AO356_03070 0.23 -3.0
687,235 - AO356_03070 0.30 -3.6
687,235 - AO356_03070 0.30 -2.2
687,286 + AO356_03070 0.32 -0.7
687,286 + AO356_03070 0.32 -2.0

Or see this region's nucleotide sequence