Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02170

Experiment: Putrescine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_02165 and AO356_02170 are separated by 176 nucleotidesAO356_02170 and AO356_02175 are separated by 177 nucleotides AO356_02165: AO356_02165 - integrase, at 465,839 to 466,990 _02165 AO356_02170: AO356_02170 - tRNA-dihydrouridine synthase A, at 467,167 to 468,102 _02170 AO356_02175: AO356_02175 - transaldolase, at 468,280 to 469,206 _02175 Position (kb) 467 468 469Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 466.209 kb on + strand, within AO356_02165at 466.209 kb on + strand, within AO356_02165at 466.209 kb on + strand, within AO356_02165at 466.209 kb on + strand, within AO356_02165at 466.401 kb on + strand, within AO356_02165at 466.471 kb on - strand, within AO356_02165at 466.487 kb on + strand, within AO356_02165at 466.487 kb on + strand, within AO356_02165at 466.488 kb on - strand, within AO356_02165at 466.488 kb on - strand, within AO356_02165at 466.639 kb on - strand, within AO356_02165at 466.689 kb on + strand, within AO356_02165at 466.765 kb on - strand, within AO356_02165at 466.902 kb on + strandat 466.903 kb on - strandat 466.903 kb on - strandat 466.945 kb on - strandat 467.022 kb on - strandat 467.028 kb on + strandat 467.202 kb on - strandat 467.202 kb on - strandat 467.393 kb on + strand, within AO356_02170at 467.393 kb on + strand, within AO356_02170at 467.394 kb on - strand, within AO356_02170at 467.436 kb on + strand, within AO356_02170at 467.436 kb on + strand, within AO356_02170at 467.436 kb on + strand, within AO356_02170at 467.436 kb on + strand, within AO356_02170at 467.437 kb on - strand, within AO356_02170at 467.437 kb on - strand, within AO356_02170at 467.437 kb on - strand, within AO356_02170at 467.560 kb on + strand, within AO356_02170at 467.560 kb on + strand, within AO356_02170at 467.560 kb on + strand, within AO356_02170at 467.561 kb on - strand, within AO356_02170at 467.617 kb on - strand, within AO356_02170at 467.821 kb on + strand, within AO356_02170at 467.821 kb on + strand, within AO356_02170at 467.833 kb on + strand, within AO356_02170at 467.833 kb on + strand, within AO356_02170at 467.834 kb on - strand, within AO356_02170at 467.834 kb on - strand, within AO356_02170at 467.920 kb on + strand, within AO356_02170at 467.920 kb on + strand, within AO356_02170at 467.920 kb on + strand, within AO356_02170at 467.921 kb on - strand, within AO356_02170at 467.921 kb on - strand, within AO356_02170at 467.921 kb on - strand, within AO356_02170at 467.921 kb on - strand, within AO356_02170at 467.921 kb on - strand, within AO356_02170at 467.922 kb on + strand, within AO356_02170at 467.922 kb on + strand, within AO356_02170at 467.922 kb on + strand, within AO356_02170at 467.922 kb on + strand, within AO356_02170at 467.922 kb on + strand, within AO356_02170at 467.922 kb on + strand, within AO356_02170at 467.923 kb on - strand, within AO356_02170at 467.923 kb on - strand, within AO356_02170at 467.923 kb on - strand, within AO356_02170at 467.923 kb on - strand, within AO356_02170at 468.142 kb on + strandat 468.142 kb on + strandat 468.142 kb on + strandat 468.143 kb on - strandat 468.143 kb on - strandat 468.143 kb on - strandat 468.143 kb on - strandat 468.143 kb on - strandat 468.147 kb on - strandat 468.422 kb on - strand, within AO356_02175at 468.422 kb on - strand, within AO356_02175at 468.535 kb on - strand, within AO356_02175at 468.806 kb on - strand, within AO356_02175at 468.814 kb on + strand, within AO356_02175at 468.838 kb on + strand, within AO356_02175at 468.883 kb on + strand, within AO356_02175at 468.883 kb on + strand, within AO356_02175at 468.883 kb on + strand, within AO356_02175at 468.883 kb on + strand, within AO356_02175at 468.884 kb on - strand, within AO356_02175at 468.889 kb on + strand, within AO356_02175at 468.889 kb on + strand, within AO356_02175at 468.889 kb on + strand, within AO356_02175at 468.890 kb on - strand, within AO356_02175at 468.890 kb on - strand, within AO356_02175at 468.890 kb on - strand, within AO356_02175at 468.892 kb on + strand, within AO356_02175at 468.892 kb on + strand, within AO356_02175at 468.892 kb on + strand, within AO356_02175at 468.892 kb on + strand, within AO356_02175at 468.893 kb on - strand, within AO356_02175at 468.893 kb on - strand, within AO356_02175at 468.893 kb on - strand, within AO356_02175at 468.907 kb on + strand, within AO356_02175at 468.907 kb on + strand, within AO356_02175

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (C)
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466,209 + AO356_02165 0.32 -0.2
466,209 + AO356_02165 0.32 -1.2
466,209 + AO356_02165 0.32 -0.6
466,209 + AO356_02165 0.32 -0.2
466,401 + AO356_02165 0.49 -1.5
466,471 - AO356_02165 0.55 +0.4
466,487 + AO356_02165 0.56 +3.5
466,487 + AO356_02165 0.56 +0.7
466,488 - AO356_02165 0.56 +0.2
466,488 - AO356_02165 0.56 +2.4
466,639 - AO356_02165 0.69 -0.4
466,689 + AO356_02165 0.74 +0.4
466,765 - AO356_02165 0.80 +0.1
466,902 + +0.8
466,903 - +0.9
466,903 - +0.3
466,945 - +0.1
467,022 - +0.7
467,028 + -0.3
467,202 - +0.7
467,202 - +0.4
467,393 + AO356_02170 0.24 +0.2
467,393 + AO356_02170 0.24 -0.0
467,394 - AO356_02170 0.24 +0.7
467,436 + AO356_02170 0.29 +0.7
467,436 + AO356_02170 0.29 -0.5
467,436 + AO356_02170 0.29 -0.4
467,436 + AO356_02170 0.29 -0.8
467,437 - AO356_02170 0.29 -1.0
467,437 - AO356_02170 0.29 -0.5
467,437 - AO356_02170 0.29 -0.9
467,560 + AO356_02170 0.42 -0.0
467,560 + AO356_02170 0.42 +0.3
467,560 + AO356_02170 0.42 +0.0
467,561 - AO356_02170 0.42 -0.6
467,617 - AO356_02170 0.48 +0.3
467,821 + AO356_02170 0.70 -1.0
467,821 + AO356_02170 0.70 +0.3
467,833 + AO356_02170 0.71 -0.6
467,833 + AO356_02170 0.71 +0.7
467,834 - AO356_02170 0.71 +1.1
467,834 - AO356_02170 0.71 -0.6
467,920 + AO356_02170 0.80 -1.1
467,920 + AO356_02170 0.80 -0.1
467,920 + AO356_02170 0.80 -0.3
467,921 - AO356_02170 0.81 +0.2
467,921 - AO356_02170 0.81 -0.3
467,921 - AO356_02170 0.81 +0.2
467,921 - AO356_02170 0.81 -0.3
467,921 - AO356_02170 0.81 -1.8
467,922 + AO356_02170 0.81 -0.4
467,922 + AO356_02170 0.81 +0.3
467,922 + AO356_02170 0.81 -1.0
467,922 + AO356_02170 0.81 -0.3
467,922 + AO356_02170 0.81 +0.3
467,922 + AO356_02170 0.81 -0.7
467,923 - AO356_02170 0.81 +0.1
467,923 - AO356_02170 0.81 -1.1
467,923 - AO356_02170 0.81 -0.5
467,923 - AO356_02170 0.81 +0.4
468,142 + +1.0
468,142 + -1.4
468,142 + -0.5
468,143 - -0.1
468,143 - -0.3
468,143 - -0.6
468,143 - +0.2
468,143 - +0.3
468,147 - +1.0
468,422 - AO356_02175 0.15 -2.3
468,422 - AO356_02175 0.15 -2.3
468,535 - AO356_02175 0.28 -2.3
468,806 - AO356_02175 0.57 -1.8
468,814 + AO356_02175 0.58 -0.8
468,838 + AO356_02175 0.60 -1.0
468,883 + AO356_02175 0.65 -2.1
468,883 + AO356_02175 0.65 -3.5
468,883 + AO356_02175 0.65 -1.4
468,883 + AO356_02175 0.65 -1.1
468,884 - AO356_02175 0.65 -2.0
468,889 + AO356_02175 0.66 -0.7
468,889 + AO356_02175 0.66 -2.0
468,889 + AO356_02175 0.66 -2.5
468,890 - AO356_02175 0.66 -2.5
468,890 - AO356_02175 0.66 -3.1
468,890 - AO356_02175 0.66 -2.4
468,892 + AO356_02175 0.66 -1.1
468,892 + AO356_02175 0.66 +0.1
468,892 + AO356_02175 0.66 -1.8
468,892 + AO356_02175 0.66 -2.8
468,893 - AO356_02175 0.66 -1.0
468,893 - AO356_02175 0.66 -3.4
468,893 - AO356_02175 0.66 -1.0
468,907 + AO356_02175 0.68 -2.7
468,907 + AO356_02175 0.68 -3.0

Or see this region's nucleotide sequence