Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_005430

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_005429 and ABIE53_005430 are separated by 48 nucleotidesABIE53_005430 and ABIE53_005431 overlap by 8 nucleotides ABIE53_005429: ABIE53_005429 - ribose transport system substrate-binding protein, at 1,706,029 to 1,706,976 _005429 ABIE53_005430: ABIE53_005430 - ribose transport system permease protein, at 1,707,025 to 1,708,056 _005430 ABIE53_005431: ABIE53_005431 - ribose transport system ATP-binding protein, at 1,708,049 to 1,709,596 _005431 Position (kb) 1707 1708 1709Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1706.034 kb on - strandat 1706.168 kb on + strand, within ABIE53_005429at 1706.356 kb on + strand, within ABIE53_005429at 1706.356 kb on + strand, within ABIE53_005429at 1706.357 kb on - strand, within ABIE53_005429at 1706.444 kb on + strand, within ABIE53_005429at 1706.444 kb on + strand, within ABIE53_005429at 1706.496 kb on - strand, within ABIE53_005429at 1706.862 kb on - strand, within ABIE53_005429at 1706.862 kb on - strand, within ABIE53_005429at 1706.960 kb on - strandat 1707.027 kb on - strandat 1707.242 kb on + strand, within ABIE53_005430at 1707.243 kb on - strand, within ABIE53_005430at 1707.243 kb on - strand, within ABIE53_005430at 1707.243 kb on - strand, within ABIE53_005430at 1707.329 kb on + strand, within ABIE53_005430at 1707.329 kb on + strand, within ABIE53_005430at 1707.330 kb on - strand, within ABIE53_005430at 1707.330 kb on - strand, within ABIE53_005430at 1707.402 kb on - strand, within ABIE53_005430at 1707.405 kb on + strand, within ABIE53_005430at 1707.405 kb on + strand, within ABIE53_005430at 1707.405 kb on + strand, within ABIE53_005430at 1707.405 kb on + strand, within ABIE53_005430at 1707.405 kb on + strand, within ABIE53_005430at 1707.406 kb on - strand, within ABIE53_005430at 1707.406 kb on - strand, within ABIE53_005430at 1707.406 kb on - strand, within ABIE53_005430at 1707.863 kb on + strand, within ABIE53_005430at 1707.864 kb on - strand, within ABIE53_005430at 1707.864 kb on - strand, within ABIE53_005430at 1707.864 kb on - strand, within ABIE53_005430at 1708.143 kb on - strandat 1708.237 kb on + strand, within ABIE53_005431at 1708.248 kb on + strand, within ABIE53_005431at 1708.311 kb on + strand, within ABIE53_005431at 1708.312 kb on - strand, within ABIE53_005431at 1708.366 kb on + strand, within ABIE53_005431at 1708.367 kb on - strand, within ABIE53_005431at 1708.410 kb on + strand, within ABIE53_005431at 1708.410 kb on + strand, within ABIE53_005431at 1708.410 kb on + strand, within ABIE53_005431at 1708.411 kb on - strand, within ABIE53_005431at 1708.548 kb on + strand, within ABIE53_005431at 1708.549 kb on - strand, within ABIE53_005431at 1708.957 kb on + strand, within ABIE53_005431at 1708.957 kb on + strand, within ABIE53_005431at 1708.957 kb on + strand, within ABIE53_005431at 1708.958 kb on - strand, within ABIE53_005431at 1708.959 kb on + strand, within ABIE53_005431at 1708.960 kb on - strand, within ABIE53_005431at 1708.961 kb on - strand, within ABIE53_005431

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
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1,706,034 - -1.9
1,706,168 + ABIE53_005429 0.15 +1.9
1,706,356 + ABIE53_005429 0.34 -0.7
1,706,356 + ABIE53_005429 0.34 +1.2
1,706,357 - ABIE53_005429 0.35 +1.6
1,706,444 + ABIE53_005429 0.44 -0.1
1,706,444 + ABIE53_005429 0.44 +1.4
1,706,496 - ABIE53_005429 0.49 +1.6
1,706,862 - ABIE53_005429 0.88 -0.4
1,706,862 - ABIE53_005429 0.88 -1.1
1,706,960 - +2.2
1,707,027 - -1.0
1,707,242 + ABIE53_005430 0.21 -0.7
1,707,243 - ABIE53_005430 0.21 -0.4
1,707,243 - ABIE53_005430 0.21 -1.4
1,707,243 - ABIE53_005430 0.21 +1.6
1,707,329 + ABIE53_005430 0.29 -3.3
1,707,329 + ABIE53_005430 0.29 +0.0
1,707,330 - ABIE53_005430 0.30 -0.6
1,707,330 - ABIE53_005430 0.30 -0.7
1,707,402 - ABIE53_005430 0.37 -0.6
1,707,405 + ABIE53_005430 0.37 -0.4
1,707,405 + ABIE53_005430 0.37 +1.6
1,707,405 + ABIE53_005430 0.37 +0.0
1,707,405 + ABIE53_005430 0.37 -1.2
1,707,405 + ABIE53_005430 0.37 +0.9
1,707,406 - ABIE53_005430 0.37 -0.2
1,707,406 - ABIE53_005430 0.37 -0.4
1,707,406 - ABIE53_005430 0.37 -0.6
1,707,863 + ABIE53_005430 0.81 -0.4
1,707,864 - ABIE53_005430 0.81 -0.7
1,707,864 - ABIE53_005430 0.81 +0.6
1,707,864 - ABIE53_005430 0.81 +0.1
1,708,143 - -2.9
1,708,237 + ABIE53_005431 0.12 +2.6
1,708,248 + ABIE53_005431 0.13 +3.0
1,708,311 + ABIE53_005431 0.17 +0.0
1,708,312 - ABIE53_005431 0.17 +0.0
1,708,366 + ABIE53_005431 0.20 +0.6
1,708,367 - ABIE53_005431 0.21 +0.6
1,708,410 + ABIE53_005431 0.23 +0.1
1,708,410 + ABIE53_005431 0.23 +0.9
1,708,410 + ABIE53_005431 0.23 +0.6
1,708,411 - ABIE53_005431 0.23 +0.2
1,708,548 + ABIE53_005431 0.32 -2.1
1,708,549 - ABIE53_005431 0.32 -0.2
1,708,957 + ABIE53_005431 0.59 +1.6
1,708,957 + ABIE53_005431 0.59 +0.0
1,708,957 + ABIE53_005431 0.59 -0.4
1,708,958 - ABIE53_005431 0.59 -0.1
1,708,959 + ABIE53_005431 0.59 -0.4
1,708,960 - ABIE53_005431 0.59 +2.2
1,708,961 - ABIE53_005431 0.59 +0.6

Or see this region's nucleotide sequence