Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004635 and ABIE53_004636 are separated by 132 nucleotides ABIE53_004636 and ABIE53_004637 are separated by 125 nucleotides
ABIE53_004635: ABIE53_004635 - L-histidine N-alpha-methyltransferase, at 817,844 to 818,824
_004635
ABIE53_004636: ABIE53_004636 - acylphosphatase, at 818,957 to 819,250
_004636
ABIE53_004637: ABIE53_004637 - dihydroflavonol-4-reductase, at 819,376 to 820,386
_004637
Position (kb) 818
819
820 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 817.961 kb on + strand, within ABIE53_004635 at 817.961 kb on + strand, within ABIE53_004635 at 817.961 kb on + strand, within ABIE53_004635 at 817.961 kb on + strand, within ABIE53_004635 at 817.961 kb on + strand, within ABIE53_004635 at 817.961 kb on + strand, within ABIE53_004635 at 817.962 kb on - strand, within ABIE53_004635 at 818.013 kb on - strand, within ABIE53_004635 at 818.013 kb on - strand, within ABIE53_004635 at 818.172 kb on - strand, within ABIE53_004635 at 818.172 kb on - strand, within ABIE53_004635 at 818.239 kb on + strand, within ABIE53_004635 at 818.239 kb on + strand, within ABIE53_004635 at 818.255 kb on + strand, within ABIE53_004635 at 818.255 kb on + strand, within ABIE53_004635 at 818.267 kb on + strand, within ABIE53_004635 at 818.267 kb on + strand, within ABIE53_004635 at 818.268 kb on - strand, within ABIE53_004635 at 818.268 kb on - strand, within ABIE53_004635 at 818.341 kb on + strand, within ABIE53_004635 at 818.342 kb on - strand, within ABIE53_004635 at 818.471 kb on + strand, within ABIE53_004635 at 818.471 kb on + strand, within ABIE53_004635 at 818.471 kb on + strand, within ABIE53_004635 at 818.472 kb on - strand, within ABIE53_004635 at 818.472 kb on - strand, within ABIE53_004635 at 818.644 kb on + strand, within ABIE53_004635 at 818.645 kb on - strand, within ABIE53_004635 at 818.673 kb on + strand, within ABIE53_004635 at 818.673 kb on + strand, within ABIE53_004635 at 818.674 kb on - strand, within ABIE53_004635 at 818.714 kb on + strand, within ABIE53_004635 at 818.714 kb on + strand, within ABIE53_004635 at 818.714 kb on + strand, within ABIE53_004635 at 818.714 kb on + strand, within ABIE53_004635 at 818.714 kb on + strand, within ABIE53_004635 at 818.715 kb on - strand, within ABIE53_004635 at 818.715 kb on - strand, within ABIE53_004635 at 818.715 kb on - strand, within ABIE53_004635 at 818.840 kb on + strand at 818.840 kb on + strand at 818.853 kb on - strand at 818.901 kb on - strand at 818.901 kb on - strand at 818.951 kb on + strand at 818.951 kb on + strand at 818.952 kb on - strand at 818.952 kb on - strand at 818.952 kb on - strand at 818.952 kb on - strand at 818.979 kb on + strand at 818.979 kb on + strand at 818.979 kb on + strand at 818.979 kb on + strand at 818.979 kb on + strand at 818.980 kb on - strand at 818.980 kb on - strand at 819.213 kb on + strand, within ABIE53_004636 at 819.213 kb on + strand, within ABIE53_004636 at 819.213 kb on + strand, within ABIE53_004636 at 819.213 kb on + strand, within ABIE53_004636 at 819.213 kb on + strand, within ABIE53_004636 at 819.213 kb on + strand, within ABIE53_004636 at 819.214 kb on - strand, within ABIE53_004636 at 819.214 kb on - strand, within ABIE53_004636 at 819.214 kb on - strand, within ABIE53_004636 at 819.214 kb on - strand, within ABIE53_004636 at 819.214 kb on - strand, within ABIE53_004636 at 819.214 kb on - strand, within ABIE53_004636 at 819.214 kb on - strand, within ABIE53_004636 at 819.214 kb on - strand, within ABIE53_004636 at 819.214 kb on - strand, within ABIE53_004636 at 819.216 kb on + strand, within ABIE53_004636 at 819.217 kb on - strand, within ABIE53_004636 at 819.217 kb on - strand, within ABIE53_004636 at 819.217 kb on - strand, within ABIE53_004636 at 819.217 kb on - strand, within ABIE53_004636 at 819.217 kb on - strand, within ABIE53_004636 at 819.217 kb on - strand, within ABIE53_004636 at 819.217 kb on - strand, within ABIE53_004636 at 819.218 kb on - strand, within ABIE53_004636 at 819.287 kb on + strand at 819.287 kb on + strand at 819.287 kb on + strand at 819.287 kb on + strand at 819.288 kb on - strand at 819.288 kb on - strand at 819.338 kb on + strand at 819.338 kb on + strand at 819.338 kb on + strand at 819.338 kb on + strand at 819.338 kb on + strand at 819.338 kb on + strand at 819.338 kb on + strand at 819.338 kb on + strand at 819.338 kb on + strand at 819.339 kb on - strand at 819.339 kb on - strand at 819.339 kb on - strand at 819.339 kb on - strand at 819.339 kb on - strand at 819.339 kb on - strand at 819.339 kb on - strand at 819.339 kb on - strand at 819.339 kb on - strand at 819.339 kb on - strand at 819.339 kb on - strand at 819.339 kb on - strand at 819.592 kb on + strand, within ABIE53_004637 at 819.592 kb on + strand, within ABIE53_004637 at 819.721 kb on + strand, within ABIE53_004637 at 819.721 kb on + strand, within ABIE53_004637 at 819.721 kb on + strand, within ABIE53_004637 at 819.721 kb on + strand, within ABIE53_004637 at 819.721 kb on + strand, within ABIE53_004637 at 819.721 kb on + strand, within ABIE53_004637 at 819.721 kb on + strand, within ABIE53_004637 at 819.722 kb on - strand, within ABIE53_004637 at 819.722 kb on - strand, within ABIE53_004637 at 819.722 kb on - strand, within ABIE53_004637 at 819.814 kb on + strand, within ABIE53_004637 at 819.814 kb on + strand, within ABIE53_004637 at 819.814 kb on + strand, within ABIE53_004637 at 819.814 kb on + strand, within ABIE53_004637 at 819.815 kb on - strand, within ABIE53_004637 at 819.815 kb on - strand, within ABIE53_004637 at 819.815 kb on - strand, within ABIE53_004637 at 819.815 kb on - strand, within ABIE53_004637 at 819.815 kb on - strand, within ABIE53_004637 at 819.816 kb on + strand, within ABIE53_004637 at 819.816 kb on + strand, within ABIE53_004637 at 819.816 kb on + strand, within ABIE53_004637 at 819.817 kb on - strand, within ABIE53_004637 at 819.817 kb on - strand, within ABIE53_004637 at 819.817 kb on - strand, within ABIE53_004637 at 819.817 kb on - strand, within ABIE53_004637 at 819.817 kb on - strand, within ABIE53_004637 at 819.817 kb on - strand, within ABIE53_004637 at 820.072 kb on + strand, within ABIE53_004637 at 820.072 kb on + strand, within ABIE53_004637 at 820.072 kb on + strand, within ABIE53_004637 at 820.072 kb on + strand, within ABIE53_004637 at 820.072 kb on + strand, within ABIE53_004637 at 820.072 kb on + strand, within ABIE53_004637 at 820.072 kb on + strand, within ABIE53_004637 at 820.072 kb on + strand, within ABIE53_004637 at 820.073 kb on - strand, within ABIE53_004637 at 820.073 kb on - strand, within ABIE53_004637 at 820.073 kb on - strand, within ABIE53_004637 at 820.074 kb on + strand, within ABIE53_004637 at 820.074 kb on + strand, within ABIE53_004637 at 820.074 kb on + strand, within ABIE53_004637 at 820.075 kb on - strand, within ABIE53_004637 at 820.075 kb on - strand, within ABIE53_004637 at 820.075 kb on - strand, within ABIE53_004637 at 820.177 kb on + strand, within ABIE53_004637
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 817,961 + ABIE53_004635 0.12 -1.6 817,961 + ABIE53_004635 0.12 -0.9 817,961 + ABIE53_004635 0.12 -0.4 817,961 + ABIE53_004635 0.12 +1.8 817,961 + ABIE53_004635 0.12 -1.6 817,961 + ABIE53_004635 0.12 -0.0 817,962 - ABIE53_004635 0.12 +1.6 818,013 - ABIE53_004635 0.17 -0.4 818,013 - ABIE53_004635 0.17 -0.2 818,172 - ABIE53_004635 0.33 -2.2 818,172 - ABIE53_004635 0.33 +1.9 818,239 + ABIE53_004635 0.40 +1.2 818,239 + ABIE53_004635 0.40 -0.7 818,255 + ABIE53_004635 0.42 -0.4 818,255 + ABIE53_004635 0.42 -0.6 818,267 + ABIE53_004635 0.43 +1.6 818,267 + ABIE53_004635 0.43 -2.0 818,268 - ABIE53_004635 0.43 -1.2 818,268 - ABIE53_004635 0.43 -1.0 818,341 + ABIE53_004635 0.51 +2.6 818,342 - ABIE53_004635 0.51 +1.6 818,471 + ABIE53_004635 0.64 -0.0 818,471 + ABIE53_004635 0.64 -1.4 818,471 + ABIE53_004635 0.64 +1.6 818,472 - ABIE53_004635 0.64 -0.4 818,472 - ABIE53_004635 0.64 -0.3 818,644 + ABIE53_004635 0.82 +1.6 818,645 - ABIE53_004635 0.82 -0.6 818,673 + ABIE53_004635 0.85 -0.4 818,673 + ABIE53_004635 0.85 +1.6 818,674 - ABIE53_004635 0.85 +0.6 818,714 + ABIE53_004635 0.89 -1.6 818,714 + ABIE53_004635 0.89 -0.8 818,714 + ABIE53_004635 0.89 +0.1 818,714 + ABIE53_004635 0.89 +0.1 818,714 + ABIE53_004635 0.89 -0.9 818,715 - ABIE53_004635 0.89 -3.2 818,715 - ABIE53_004635 0.89 +0.7 818,715 - ABIE53_004635 0.89 +0.7 818,840 + -1.3 818,840 + -0.0 818,853 - +0.6 818,901 - +0.5 818,901 - +1.3 818,951 + +0.2 818,951 + -0.0 818,952 - -0.6 818,952 - +3.2 818,952 - -0.1 818,952 - +3.6 818,979 + -3.1 818,979 + +0.6 818,979 + -2.0 818,979 + +1.3 818,979 + -1.1 818,980 - -1.3 818,980 - +0.2 819,213 + ABIE53_004636 0.87 -1.2 819,213 + ABIE53_004636 0.87 -1.4 819,213 + ABIE53_004636 0.87 -0.3 819,213 + ABIE53_004636 0.87 -0.1 819,213 + ABIE53_004636 0.87 -0.0 819,213 + ABIE53_004636 0.87 +2.6 819,214 - ABIE53_004636 0.87 +1.6 819,214 - ABIE53_004636 0.87 -1.4 819,214 - ABIE53_004636 0.87 -0.3 819,214 - ABIE53_004636 0.87 +0.2 819,214 - ABIE53_004636 0.87 +0.0 819,214 - ABIE53_004636 0.87 -1.8 819,214 - ABIE53_004636 0.87 +1.6 819,214 - ABIE53_004636 0.87 -3.0 819,214 - ABIE53_004636 0.87 +0.6 819,216 + ABIE53_004636 0.88 +1.3 819,217 - ABIE53_004636 0.88 +1.9 819,217 - ABIE53_004636 0.88 -0.4 819,217 - ABIE53_004636 0.88 -1.1 819,217 - ABIE53_004636 0.88 +1.2 819,217 - ABIE53_004636 0.88 +3.2 819,217 - ABIE53_004636 0.88 -2.4 819,217 - ABIE53_004636 0.88 +0.7 819,218 - ABIE53_004636 0.89 +1.6 819,287 + +1.6 819,287 + -0.7 819,287 + +1.2 819,287 + +2.3 819,288 - -0.2 819,288 - -0.7 819,338 + +2.4 819,338 + +1.3 819,338 + +0.6 819,338 + -0.4 819,338 + -1.6 819,338 + -3.7 819,338 + -0.1 819,338 + +0.8 819,338 + -0.4 819,339 - +2.2 819,339 - +0.8 819,339 - +0.2 819,339 - +1.3 819,339 - -0.2 819,339 - -0.1 819,339 - -0.4 819,339 - -0.0 819,339 - -0.1 819,339 - -0.4 819,339 - -3.3 819,339 - +0.1 819,592 + ABIE53_004637 0.21 +0.4 819,592 + ABIE53_004637 0.21 -0.4 819,721 + ABIE53_004637 0.34 -0.9 819,721 + ABIE53_004637 0.34 -0.7 819,721 + ABIE53_004637 0.34 +1.7 819,721 + ABIE53_004637 0.34 +0.1 819,721 + ABIE53_004637 0.34 -2.1 819,721 + ABIE53_004637 0.34 +1.8 819,721 + ABIE53_004637 0.34 -0.9 819,722 - ABIE53_004637 0.34 -1.4 819,722 - ABIE53_004637 0.34 -2.4 819,722 - ABIE53_004637 0.34 +1.9 819,814 + ABIE53_004637 0.43 +0.3 819,814 + ABIE53_004637 0.43 -1.5 819,814 + ABIE53_004637 0.43 -0.0 819,814 + ABIE53_004637 0.43 -2.6 819,815 - ABIE53_004637 0.43 +1.6 819,815 - ABIE53_004637 0.43 -1.6 819,815 - ABIE53_004637 0.43 -0.4 819,815 - ABIE53_004637 0.43 -2.1 819,815 - ABIE53_004637 0.43 +0.0 819,816 + ABIE53_004637 0.44 -1.2 819,816 + ABIE53_004637 0.44 +0.6 819,816 + ABIE53_004637 0.44 -0.3 819,817 - ABIE53_004637 0.44 -0.0 819,817 - ABIE53_004637 0.44 -1.2 819,817 - ABIE53_004637 0.44 -1.7 819,817 - ABIE53_004637 0.44 +1.7 819,817 - ABIE53_004637 0.44 -1.7 819,817 - ABIE53_004637 0.44 -1.2 820,072 + ABIE53_004637 0.69 -1.0 820,072 + ABIE53_004637 0.69 -1.7 820,072 + ABIE53_004637 0.69 -1.9 820,072 + ABIE53_004637 0.69 -1.2 820,072 + ABIE53_004637 0.69 +1.9 820,072 + ABIE53_004637 0.69 +2.1 820,072 + ABIE53_004637 0.69 -0.4 820,072 + ABIE53_004637 0.69 +1.6 820,073 - ABIE53_004637 0.69 -1.7 820,073 - ABIE53_004637 0.69 +0.5 820,073 - ABIE53_004637 0.69 +1.6 820,074 + ABIE53_004637 0.69 -0.2 820,074 + ABIE53_004637 0.69 -0.7 820,074 + ABIE53_004637 0.69 -2.1 820,075 - ABIE53_004637 0.69 -1.9 820,075 - ABIE53_004637 0.69 -0.7 820,075 - ABIE53_004637 0.69 -3.3 820,177 + ABIE53_004637 0.79 -1.4
Or see this region's nucleotide sequence