Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004364

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_004363 and ABIE53_004364 are separated by 57 nucleotidesABIE53_004364 and ABIE53_004365 are separated by 49 nucleotides ABIE53_004363: ABIE53_004363 - signal transduction histidine kinase, at 549,883 to 552,174 _004363 ABIE53_004364: ABIE53_004364 - iron complex outermembrane receptor protein, at 552,232 to 554,430 _004364 ABIE53_004365: ABIE53_004365 - NADPH2:quinone reductase, at 554,480 to 555,469 _004365 Position (kb) 552 553 554 555Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 551.313 kb on - strand, within ABIE53_004363at 551.363 kb on + strand, within ABIE53_004363at 551.363 kb on + strand, within ABIE53_004363at 551.364 kb on - strand, within ABIE53_004363at 551.494 kb on + strand, within ABIE53_004363at 551.532 kb on - strand, within ABIE53_004363at 551.556 kb on - strand, within ABIE53_004363at 551.568 kb on - strand, within ABIE53_004363at 551.729 kb on + strand, within ABIE53_004363at 551.730 kb on - strand, within ABIE53_004363at 551.901 kb on - strand, within ABIE53_004363at 551.901 kb on - strand, within ABIE53_004363at 551.906 kb on - strand, within ABIE53_004363at 551.999 kb on + strandat 552.000 kb on - strandat 552.213 kb on + strandat 552.243 kb on + strandat 552.465 kb on + strand, within ABIE53_004364at 552.466 kb on - strand, within ABIE53_004364at 552.559 kb on + strand, within ABIE53_004364at 552.560 kb on - strand, within ABIE53_004364at 552.560 kb on - strand, within ABIE53_004364at 552.560 kb on - strand, within ABIE53_004364at 552.563 kb on + strand, within ABIE53_004364at 552.564 kb on - strand, within ABIE53_004364at 552.564 kb on - strand, within ABIE53_004364at 552.564 kb on - strand, within ABIE53_004364at 552.608 kb on - strand, within ABIE53_004364at 552.608 kb on - strand, within ABIE53_004364at 552.700 kb on + strand, within ABIE53_004364at 552.700 kb on + strand, within ABIE53_004364at 552.700 kb on + strand, within ABIE53_004364at 552.701 kb on - strand, within ABIE53_004364at 552.701 kb on - strand, within ABIE53_004364at 552.702 kb on + strand, within ABIE53_004364at 552.704 kb on - strand, within ABIE53_004364at 552.725 kb on + strand, within ABIE53_004364at 552.747 kb on - strand, within ABIE53_004364at 552.747 kb on - strand, within ABIE53_004364at 552.842 kb on - strand, within ABIE53_004364at 552.842 kb on - strand, within ABIE53_004364at 552.842 kb on - strand, within ABIE53_004364at 552.876 kb on + strand, within ABIE53_004364at 552.898 kb on + strand, within ABIE53_004364at 552.899 kb on - strand, within ABIE53_004364at 552.899 kb on - strand, within ABIE53_004364at 552.899 kb on - strand, within ABIE53_004364at 553.034 kb on - strand, within ABIE53_004364at 553.034 kb on - strand, within ABIE53_004364at 553.034 kb on - strand, within ABIE53_004364at 553.063 kb on - strand, within ABIE53_004364at 553.126 kb on + strand, within ABIE53_004364at 553.127 kb on - strand, within ABIE53_004364at 553.127 kb on - strand, within ABIE53_004364at 553.312 kb on + strand, within ABIE53_004364at 553.336 kb on + strand, within ABIE53_004364at 553.336 kb on + strand, within ABIE53_004364at 553.337 kb on - strand, within ABIE53_004364at 553.407 kb on - strand, within ABIE53_004364at 553.421 kb on - strand, within ABIE53_004364at 553.469 kb on - strand, within ABIE53_004364at 553.494 kb on + strand, within ABIE53_004364at 553.566 kb on + strand, within ABIE53_004364at 553.566 kb on + strand, within ABIE53_004364at 553.579 kb on + strand, within ABIE53_004364at 553.580 kb on - strand, within ABIE53_004364at 553.580 kb on - strand, within ABIE53_004364at 553.580 kb on - strand, within ABIE53_004364at 553.726 kb on + strand, within ABIE53_004364at 553.726 kb on + strand, within ABIE53_004364at 553.726 kb on + strand, within ABIE53_004364at 553.727 kb on - strand, within ABIE53_004364at 553.727 kb on - strand, within ABIE53_004364at 553.727 kb on - strand, within ABIE53_004364at 553.776 kb on + strand, within ABIE53_004364at 553.777 kb on - strand, within ABIE53_004364at 553.886 kb on + strand, within ABIE53_004364at 553.901 kb on - strand, within ABIE53_004364at 554.053 kb on + strand, within ABIE53_004364at 554.053 kb on + strand, within ABIE53_004364at 554.053 kb on + strand, within ABIE53_004364at 554.053 kb on + strand, within ABIE53_004364at 554.053 kb on + strand, within ABIE53_004364at 554.054 kb on - strand, within ABIE53_004364at 554.059 kb on + strand, within ABIE53_004364at 554.213 kb on - strandat 554.263 kb on + strandat 554.265 kb on + strandat 554.266 kb on - strandat 554.290 kb on + strandat 554.369 kb on - strandat 554.419 kb on + strandat 554.527 kb on - strandat 554.661 kb on + strand, within ABIE53_004365at 554.662 kb on - strand, within ABIE53_004365at 554.662 kb on - strand, within ABIE53_004365at 554.662 kb on - strand, within ABIE53_004365at 554.662 kb on - strand, within ABIE53_004365at 554.673 kb on + strand, within ABIE53_004365at 554.673 kb on + strand, within ABIE53_004365at 554.673 kb on + strand, within ABIE53_004365at 554.674 kb on - strand, within ABIE53_004365at 555.077 kb on + strand, within ABIE53_004365at 555.077 kb on + strand, within ABIE53_004365at 555.077 kb on + strand, within ABIE53_004365at 555.077 kb on + strand, within ABIE53_004365at 555.078 kb on - strand, within ABIE53_004365at 555.081 kb on + strand, within ABIE53_004365at 555.081 kb on + strand, within ABIE53_004365at 555.082 kb on - strand, within ABIE53_004365at 555.082 kb on - strand, within ABIE53_004365at 555.171 kb on + strand, within ABIE53_004365at 555.172 kb on - strand, within ABIE53_004365at 555.279 kb on + strand, within ABIE53_004365at 555.315 kb on + strand, within ABIE53_004365at 555.315 kb on + strand, within ABIE53_004365at 555.315 kb on + strand, within ABIE53_004365at 555.315 kb on + strand, within ABIE53_004365at 555.315 kb on - strand, within ABIE53_004365at 555.316 kb on - strand, within ABIE53_004365at 555.316 kb on - strand, within ABIE53_004365at 555.316 kb on - strand, within ABIE53_004365at 555.316 kb on - strand, within ABIE53_004365at 555.316 kb on - strand, within ABIE53_004365at 555.316 kb on - strand, within ABIE53_004365

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
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551,313 - ABIE53_004363 0.62 -1.2
551,363 + ABIE53_004363 0.65 -1.8
551,363 + ABIE53_004363 0.65 +0.6
551,364 - ABIE53_004363 0.65 -2.4
551,494 + ABIE53_004363 0.70 +0.0
551,532 - ABIE53_004363 0.72 +0.3
551,556 - ABIE53_004363 0.73 -2.6
551,568 - ABIE53_004363 0.74 +0.3
551,729 + ABIE53_004363 0.81 -0.5
551,730 - ABIE53_004363 0.81 +3.6
551,901 - ABIE53_004363 0.88 -0.7
551,901 - ABIE53_004363 0.88 -0.6
551,906 - ABIE53_004363 0.88 +0.0
551,999 + +0.0
552,000 - -0.3
552,213 + -1.0
552,243 + -0.7
552,465 + ABIE53_004364 0.11 -1.7
552,466 - ABIE53_004364 0.11 +0.9
552,559 + ABIE53_004364 0.15 -0.4
552,560 - ABIE53_004364 0.15 -0.7
552,560 - ABIE53_004364 0.15 +0.6
552,560 - ABIE53_004364 0.15 -3.1
552,563 + ABIE53_004364 0.15 +0.6
552,564 - ABIE53_004364 0.15 -1.2
552,564 - ABIE53_004364 0.15 -0.8
552,564 - ABIE53_004364 0.15 -0.4
552,608 - ABIE53_004364 0.17 +2.0
552,608 - ABIE53_004364 0.17 +2.9
552,700 + ABIE53_004364 0.21 -1.8
552,700 + ABIE53_004364 0.21 +0.8
552,700 + ABIE53_004364 0.21 +0.0
552,701 - ABIE53_004364 0.21 -1.6
552,701 - ABIE53_004364 0.21 +2.5
552,702 + ABIE53_004364 0.21 -0.4
552,704 - ABIE53_004364 0.21 +0.6
552,725 + ABIE53_004364 0.22 -1.0
552,747 - ABIE53_004364 0.23 +0.2
552,747 - ABIE53_004364 0.23 -1.2
552,842 - ABIE53_004364 0.28 +0.6
552,842 - ABIE53_004364 0.28 +0.6
552,842 - ABIE53_004364 0.28 +0.4
552,876 + ABIE53_004364 0.29 +0.0
552,898 + ABIE53_004364 0.30 -0.1
552,899 - ABIE53_004364 0.30 -1.6
552,899 - ABIE53_004364 0.30 +0.5
552,899 - ABIE53_004364 0.30 -0.4
553,034 - ABIE53_004364 0.36 +1.6
553,034 - ABIE53_004364 0.36 +1.4
553,034 - ABIE53_004364 0.36 +2.0
553,063 - ABIE53_004364 0.38 +0.6
553,126 + ABIE53_004364 0.41 +0.8
553,127 - ABIE53_004364 0.41 -1.2
553,127 - ABIE53_004364 0.41 -1.5
553,312 + ABIE53_004364 0.49 +0.4
553,336 + ABIE53_004364 0.50 +0.6
553,336 + ABIE53_004364 0.50 -0.7
553,337 - ABIE53_004364 0.50 +0.6
553,407 - ABIE53_004364 0.53 +1.2
553,421 - ABIE53_004364 0.54 +1.0
553,469 - ABIE53_004364 0.56 +2.4
553,494 + ABIE53_004364 0.57 -0.4
553,566 + ABIE53_004364 0.61 +1.1
553,566 + ABIE53_004364 0.61 -1.2
553,579 + ABIE53_004364 0.61 +1.6
553,580 - ABIE53_004364 0.61 +1.6
553,580 - ABIE53_004364 0.61 -0.3
553,580 - ABIE53_004364 0.61 -2.8
553,726 + ABIE53_004364 0.68 -0.4
553,726 + ABIE53_004364 0.68 -1.2
553,726 + ABIE53_004364 0.68 +1.8
553,727 - ABIE53_004364 0.68 -1.2
553,727 - ABIE53_004364 0.68 +0.0
553,727 - ABIE53_004364 0.68 -1.6
553,776 + ABIE53_004364 0.70 -2.2
553,777 - ABIE53_004364 0.70 +0.4
553,886 + ABIE53_004364 0.75 +2.4
553,901 - ABIE53_004364 0.76 +2.6
554,053 + ABIE53_004364 0.83 +0.7
554,053 + ABIE53_004364 0.83 -1.6
554,053 + ABIE53_004364 0.83 -0.4
554,053 + ABIE53_004364 0.83 +0.0
554,053 + ABIE53_004364 0.83 +2.9
554,054 - ABIE53_004364 0.83 +0.6
554,059 + ABIE53_004364 0.83 -1.0
554,213 - +0.0
554,263 + +1.0
554,265 + -1.7
554,266 - -1.7
554,290 + -0.3
554,369 - +1.6
554,419 + -0.4
554,527 - -0.4
554,661 + ABIE53_004365 0.18 +0.0
554,662 - ABIE53_004365 0.18 +0.0
554,662 - ABIE53_004365 0.18 +1.6
554,662 - ABIE53_004365 0.18 +0.0
554,662 - ABIE53_004365 0.18 +0.0
554,673 + ABIE53_004365 0.19 -2.2
554,673 + ABIE53_004365 0.19 +0.1
554,673 + ABIE53_004365 0.19 +0.6
554,674 - ABIE53_004365 0.20 -0.4
555,077 + ABIE53_004365 0.60 -1.8
555,077 + ABIE53_004365 0.60 -0.4
555,077 + ABIE53_004365 0.60 -0.1
555,077 + ABIE53_004365 0.60 -0.4
555,078 - ABIE53_004365 0.60 -0.4
555,081 + ABIE53_004365 0.61 +1.1
555,081 + ABIE53_004365 0.61 -0.8
555,082 - ABIE53_004365 0.61 -2.0
555,082 - ABIE53_004365 0.61 +0.9
555,171 + ABIE53_004365 0.70 -0.4
555,172 - ABIE53_004365 0.70 +0.2
555,279 + ABIE53_004365 0.81 -0.4
555,315 + ABIE53_004365 0.84 +0.4
555,315 + ABIE53_004365 0.84 +0.1
555,315 + ABIE53_004365 0.84 +1.2
555,315 + ABIE53_004365 0.84 -1.6
555,315 - ABIE53_004365 0.84 +0.0
555,316 - ABIE53_004365 0.84 +0.3
555,316 - ABIE53_004365 0.84 -1.7
555,316 - ABIE53_004365 0.84 +0.6
555,316 - ABIE53_004365 0.84 -1.2
555,316 - ABIE53_004365 0.84 +0.0
555,316 - ABIE53_004365 0.84 +0.4

Or see this region's nucleotide sequence