Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003988

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_003987 and ABIE53_003988 are separated by 18 nucleotidesABIE53_003988 and ABIE53_003989 are separated by 299 nucleotides ABIE53_003987: ABIE53_003987 - 4-hydroxybenzoate polyprenyltransferase, at 143,332 to 144,753 _003987 ABIE53_003988: ABIE53_003988 - small multidrug resistance pump, at 144,772 to 145,128 _003988 ABIE53_003989: ABIE53_003989 - membrane-associated phospholipid phosphatase, at 145,428 to 146,120 _003989 Position (kb) 144 145 146Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 143.772 kb on - strand, within ABIE53_003987at 143.914 kb on + strand, within ABIE53_003987at 143.915 kb on - strand, within ABIE53_003987at 143.946 kb on - strand, within ABIE53_003987at 144.038 kb on + strand, within ABIE53_003987at 144.038 kb on + strand, within ABIE53_003987at 144.039 kb on - strand, within ABIE53_003987at 144.040 kb on + strand, within ABIE53_003987at 144.041 kb on - strand, within ABIE53_003987at 144.041 kb on - strand, within ABIE53_003987at 144.086 kb on + strand, within ABIE53_003987at 144.086 kb on + strand, within ABIE53_003987at 144.086 kb on + strand, within ABIE53_003987at 144.086 kb on + strand, within ABIE53_003987at 144.086 kb on + strand, within ABIE53_003987at 144.086 kb on + strand, within ABIE53_003987at 144.087 kb on - strand, within ABIE53_003987at 144.087 kb on - strand, within ABIE53_003987at 144.087 kb on - strand, within ABIE53_003987at 144.087 kb on - strand, within ABIE53_003987at 144.087 kb on - strand, within ABIE53_003987at 144.090 kb on + strand, within ABIE53_003987at 144.091 kb on - strand, within ABIE53_003987at 144.144 kb on + strand, within ABIE53_003987at 144.213 kb on - strand, within ABIE53_003987at 144.213 kb on - strand, within ABIE53_003987at 144.223 kb on + strand, within ABIE53_003987at 144.234 kb on + strand, within ABIE53_003987at 144.234 kb on + strand, within ABIE53_003987at 144.235 kb on - strand, within ABIE53_003987at 144.235 kb on - strand, within ABIE53_003987at 144.235 kb on - strand, within ABIE53_003987at 144.235 kb on - strand, within ABIE53_003987at 144.244 kb on + strand, within ABIE53_003987at 144.273 kb on + strand, within ABIE53_003987at 144.301 kb on + strand, within ABIE53_003987at 144.302 kb on - strand, within ABIE53_003987at 144.302 kb on - strand, within ABIE53_003987at 144.372 kb on + strand, within ABIE53_003987at 144.374 kb on - strand, within ABIE53_003987at 144.466 kb on + strand, within ABIE53_003987at 144.471 kb on + strand, within ABIE53_003987at 144.544 kb on + strand, within ABIE53_003987at 144.544 kb on + strand, within ABIE53_003987at 144.544 kb on + strand, within ABIE53_003987at 144.545 kb on - strand, within ABIE53_003987at 144.564 kb on - strand, within ABIE53_003987at 144.603 kb on - strand, within ABIE53_003987at 144.713 kb on + strandat 144.728 kb on + strandat 144.807 kb on + strandat 144.891 kb on - strand, within ABIE53_003988at 144.896 kb on - strand, within ABIE53_003988at 144.919 kb on + strand, within ABIE53_003988at 145.085 kb on + strand, within ABIE53_003988at 145.100 kb on + strandat 145.101 kb on - strandat 145.102 kb on + strandat 145.102 kb on + strandat 145.103 kb on - strandat 145.159 kb on + strandat 145.165 kb on + strandat 145.166 kb on - strandat 145.317 kb on - strandat 145.317 kb on - strandat 145.321 kb on + strandat 145.322 kb on - strandat 145.412 kb on - strandat 145.521 kb on + strand, within ABIE53_003989at 145.521 kb on + strand, within ABIE53_003989at 145.521 kb on + strand, within ABIE53_003989at 145.521 kb on + strand, within ABIE53_003989at 145.521 kb on + strand, within ABIE53_003989at 145.521 kb on + strand, within ABIE53_003989at 145.521 kb on + strand, within ABIE53_003989at 145.522 kb on - strand, within ABIE53_003989at 145.522 kb on - strand, within ABIE53_003989at 145.522 kb on - strand, within ABIE53_003989at 145.565 kb on - strand, within ABIE53_003989at 145.682 kb on + strand, within ABIE53_003989at 145.772 kb on + strand, within ABIE53_003989at 145.807 kb on + strand, within ABIE53_003989at 145.807 kb on + strand, within ABIE53_003989at 145.854 kb on + strand, within ABIE53_003989at 145.855 kb on - strand, within ABIE53_003989at 145.946 kb on + strand, within ABIE53_003989at 145.946 kb on + strand, within ABIE53_003989at 145.946 kb on + strand, within ABIE53_003989at 145.950 kb on + strand, within ABIE53_003989at 145.950 kb on + strand, within ABIE53_003989at 145.950 kb on + strand, within ABIE53_003989at 145.950 kb on + strand, within ABIE53_003989at 145.950 kb on + strand, within ABIE53_003989at 145.951 kb on - strand, within ABIE53_003989at 145.951 kb on - strand, within ABIE53_003989at 145.951 kb on - strand, within ABIE53_003989at 145.994 kb on + strand, within ABIE53_003989at 145.994 kb on + strand, within ABIE53_003989at 145.994 kb on + strand, within ABIE53_003989at 145.995 kb on - strand, within ABIE53_003989at 145.996 kb on + strand, within ABIE53_003989at 145.997 kb on - strand, within ABIE53_003989at 146.084 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
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143,772 - ABIE53_003987 0.31 +2.4
143,914 + ABIE53_003987 0.41 -0.0
143,915 - ABIE53_003987 0.41 -0.2
143,946 - ABIE53_003987 0.43 -2.3
144,038 + ABIE53_003987 0.50 -1.0
144,038 + ABIE53_003987 0.50 -1.3
144,039 - ABIE53_003987 0.50 -0.0
144,040 + ABIE53_003987 0.50 +1.2
144,041 - ABIE53_003987 0.50 +0.5
144,041 - ABIE53_003987 0.50 +0.9
144,086 + ABIE53_003987 0.53 -1.6
144,086 + ABIE53_003987 0.53 +1.6
144,086 + ABIE53_003987 0.53 +0.2
144,086 + ABIE53_003987 0.53 -0.6
144,086 + ABIE53_003987 0.53 +3.1
144,086 + ABIE53_003987 0.53 +1.3
144,087 - ABIE53_003987 0.53 -0.0
144,087 - ABIE53_003987 0.53 -0.4
144,087 - ABIE53_003987 0.53 -1.6
144,087 - ABIE53_003987 0.53 -3.2
144,087 - ABIE53_003987 0.53 +0.6
144,090 + ABIE53_003987 0.53 -1.4
144,091 - ABIE53_003987 0.53 -1.9
144,144 + ABIE53_003987 0.57 +2.4
144,213 - ABIE53_003987 0.62 -2.3
144,213 - ABIE53_003987 0.62 -0.0
144,223 + ABIE53_003987 0.63 -1.6
144,234 + ABIE53_003987 0.63 -0.4
144,234 + ABIE53_003987 0.63 -0.4
144,235 - ABIE53_003987 0.64 -1.0
144,235 - ABIE53_003987 0.64 -2.3
144,235 - ABIE53_003987 0.64 -1.2
144,235 - ABIE53_003987 0.64 -0.1
144,244 + ABIE53_003987 0.64 -0.9
144,273 + ABIE53_003987 0.66 +1.6
144,301 + ABIE53_003987 0.68 -3.0
144,302 - ABIE53_003987 0.68 -2.4
144,302 - ABIE53_003987 0.68 -1.3
144,372 + ABIE53_003987 0.73 +0.6
144,374 - ABIE53_003987 0.73 -0.4
144,466 + ABIE53_003987 0.80 +0.6
144,471 + ABIE53_003987 0.80 -0.8
144,544 + ABIE53_003987 0.85 -2.9
144,544 + ABIE53_003987 0.85 -2.0
144,544 + ABIE53_003987 0.85 -0.6
144,545 - ABIE53_003987 0.85 -2.0
144,564 - ABIE53_003987 0.87 -1.6
144,603 - ABIE53_003987 0.89 -1.6
144,713 + -1.0
144,728 + -0.3
144,807 + -0.0
144,891 - ABIE53_003988 0.33 -1.0
144,896 - ABIE53_003988 0.35 -0.4
144,919 + ABIE53_003988 0.41 -0.4
145,085 + ABIE53_003988 0.88 -2.5
145,100 + -0.8
145,101 - -0.2
145,102 + -1.1
145,102 + -0.0
145,103 - -0.9
145,159 + +1.6
145,165 + -0.0
145,166 - -0.8
145,317 - -0.4
145,317 - +0.6
145,321 + -1.3
145,322 - +0.1
145,412 - +1.6
145,521 + ABIE53_003989 0.13 +0.4
145,521 + ABIE53_003989 0.13 -0.4
145,521 + ABIE53_003989 0.13 -0.0
145,521 + ABIE53_003989 0.13 +0.2
145,521 + ABIE53_003989 0.13 -1.3
145,521 + ABIE53_003989 0.13 +1.3
145,521 + ABIE53_003989 0.13 -0.0
145,522 - ABIE53_003989 0.14 -0.8
145,522 - ABIE53_003989 0.14 -1.9
145,522 - ABIE53_003989 0.14 -1.3
145,565 - ABIE53_003989 0.20 +0.6
145,682 + ABIE53_003989 0.37 -2.1
145,772 + ABIE53_003989 0.50 -0.3
145,807 + ABIE53_003989 0.55 +1.6
145,807 + ABIE53_003989 0.55 +1.6
145,854 + ABIE53_003989 0.61 -0.6
145,855 - ABIE53_003989 0.62 -1.0
145,946 + ABIE53_003989 0.75 -1.0
145,946 + ABIE53_003989 0.75 +0.2
145,946 + ABIE53_003989 0.75 -0.4
145,950 + ABIE53_003989 0.75 +1.6
145,950 + ABIE53_003989 0.75 -1.8
145,950 + ABIE53_003989 0.75 -0.4
145,950 + ABIE53_003989 0.75 +1.6
145,950 + ABIE53_003989 0.75 -0.0
145,951 - ABIE53_003989 0.75 +1.0
145,951 - ABIE53_003989 0.75 +0.9
145,951 - ABIE53_003989 0.75 -1.6
145,994 + ABIE53_003989 0.82 +2.6
145,994 + ABIE53_003989 0.82 -0.4
145,994 + ABIE53_003989 0.82 -1.0
145,995 - ABIE53_003989 0.82 -1.6
145,996 + ABIE53_003989 0.82 -1.4
145,997 - ABIE53_003989 0.82 -0.4
146,084 + -0.8

Or see this region's nucleotide sequence