Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001584

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
1,764,686	+				+1.4
1,764,686	+				+0.1
1,764,687	-				+0.6
1,764,701	-				+1.6
1,764,711	+				-0.4
1,764,730	+				-0.9
1,764,752	+				-3.3
1,764,752	+				-1.7
1,764,800	+				-0.6
1,764,820	+				+1.2
1,764,820	+				-0.6
1,764,820	+				-0.5
1,764,821	-				-1.6
1,764,821	-				-1.0
1,764,901	+		ABIE53_001583	0.15	+0.3
1,764,901	+		ABIE53_001583	0.15	+1.4
1,764,902	-		ABIE53_001583	0.15	-2.0
1,764,902	-		ABIE53_001583	0.15	+1.7
1,764,919	+		ABIE53_001583	0.18	+1.4
1,764,919	+		ABIE53_001583	0.18	-1.6
1,764,919	+		ABIE53_001583	0.18	-0.6
1,764,919	+		ABIE53_001583	0.18	-2.9
1,764,919	+		ABIE53_001583	0.18	-0.9
1,764,919	+		ABIE53_001583	0.18	-0.7
1,764,919	+		ABIE53_001583	0.18	-1.4
1,764,919	+		ABIE53_001583	0.18	-1.6
1,764,919	+		ABIE53_001583	0.18	+0.6
1,764,919	+		ABIE53_001583	0.18	-1.1
1,764,919	+		ABIE53_001583	0.18	+1.4
1,764,920	-		ABIE53_001583	0.18	-1.9
1,764,920	-		ABIE53_001583	0.18	-1.7
1,764,920	-		ABIE53_001583	0.18	+2.2
1,764,920	-		ABIE53_001583	0.18	-0.6
1,764,920	-		ABIE53_001583	0.18	-0.9
1,764,920	-		ABIE53_001583	0.18	-0.6
1,764,920	-		ABIE53_001583	0.18	+0.1
1,764,920	-		ABIE53_001583	0.18	-0.1
1,764,920	-		ABIE53_001583	0.18	+2.4
1,764,920	-		ABIE53_001583	0.18	-0.6
1,764,920	-		ABIE53_001583	0.18	-0.1
1,764,920	-		ABIE53_001583	0.18	-0.6
1,764,920	-		ABIE53_001583	0.18	-0.8
1,764,920	-		ABIE53_001583	0.18	+0.4
1,764,920	-		ABIE53_001583	0.18	+1.9
1,764,920	-		ABIE53_001583	0.18	-1.4
1,764,920	-		ABIE53_001583	0.18	-1.7
1,764,925	+		ABIE53_001583	0.19	+0.4
1,764,925	+		ABIE53_001583	0.19	-1.0
1,764,925	+		ABIE53_001583	0.19	-1.1
1,764,925	+		ABIE53_001583	0.19	+0.4
1,764,925	+		ABIE53_001583	0.19	+1.3
1,764,925	+		ABIE53_001583	0.19	-0.1
1,764,925	+		ABIE53_001583	0.19	-0.6
1,764,925	+		ABIE53_001583	0.19	-1.4
1,764,926	-		ABIE53_001583	0.19	+1.0
1,764,926	-		ABIE53_001583	0.19	-0.9
1,764,926	-		ABIE53_001583	0.19	+0.0
1,764,926	-		ABIE53_001583	0.19	-1.6
1,764,926	-		ABIE53_001583	0.19	+1.8
1,764,926	-		ABIE53_001583	0.19	+0.9
1,764,926	-		ABIE53_001583	0.19	-1.2
1,764,926	-		ABIE53_001583	0.19	-0.0
1,764,926	-		ABIE53_001583	0.19	+6.0
1,764,926	-		ABIE53_001583	0.19	+0.8
1,764,926	-		ABIE53_001583	0.19	-0.6
1,764,926	-		ABIE53_001583	0.19	-0.9
1,764,940	+		ABIE53_001583	0.21	+1.4
1,764,941	-		ABIE53_001583	0.22	-0.5
1,764,941	-		ABIE53_001583	0.22	-1.6
1,764,946	+		ABIE53_001583	0.23	-1.1
1,764,946	+		ABIE53_001583	0.23	-0.9
1,764,946	+		ABIE53_001583	0.23	-0.1
1,764,946	+		ABIE53_001583	0.23	-1.0
1,764,946	+		ABIE53_001583	0.23	+0.4
1,764,946	+		ABIE53_001583	0.23	+0.4
1,764,946	+		ABIE53_001583	0.23	+0.1
1,764,947	-		ABIE53_001583	0.23	-1.3
1,764,947	-		ABIE53_001583	0.23	-1.3
1,764,947	-		ABIE53_001583	0.23	+0.2
1,764,947	-		ABIE53_001583	0.23	+0.1
1,764,947	-		ABIE53_001583	0.23	-0.3
1,764,947	-		ABIE53_001583	0.23	+0.6
1,764,947	-		ABIE53_001583	0.23	-1.1
1,764,947	-		ABIE53_001583	0.23	-0.9
1,764,947	-		ABIE53_001583	0.23	+0.4
1,764,947	-		ABIE53_001583	0.23	+2.1
1,764,979	+		ABIE53_001583	0.28	-1.4
1,764,979	+		ABIE53_001583	0.28	+1.4
1,764,979	+		ABIE53_001583	0.28	-1.9
1,764,979	+		ABIE53_001583	0.28	+1.0
1,764,979	+		ABIE53_001583	0.28	-0.7
1,764,979	+		ABIE53_001583	0.28	+1.5
1,764,979	+		ABIE53_001583	0.28	+0.4
1,764,979	+		ABIE53_001583	0.28	-2.1
1,764,980	-		ABIE53_001583	0.29	-1.8
1,764,980	-		ABIE53_001583	0.29	+0.9
1,764,980	-		ABIE53_001583	0.29	+0.7
1,764,980	-		ABIE53_001583	0.29	-0.4
1,764,980	-		ABIE53_001583	0.29	-2.9
1,765,183	+		ABIE53_001583	0.65	+0.6
1,765,183	+		ABIE53_001583	0.65	-1.3
1,765,183	+		ABIE53_001583	0.65	+2.2
1,765,183	+		ABIE53_001583	0.65	+2.7
1,765,183	+		ABIE53_001583	0.65	-3.5
1,765,183	+		ABIE53_001583	0.65	+0.5
1,765,184	-		ABIE53_001583	0.65	+1.0
1,765,184	-		ABIE53_001583	0.65	-0.6
1,765,184	-		ABIE53_001583	0.65	-1.0
1,765,184	-		ABIE53_001583	0.65	+0.6
1,765,244	-		ABIE53_001583	0.75	-0.6
1,765,424	-				+2.6
1,765,514	+				-0.6
1,765,514	+				-1.1
1,765,514	+				-0.1
1,765,514	+				+0.1
1,765,514	+				-0.3
1,765,514	+				+2.9
1,765,515	-				+0.8
1,765,515	-				+0.1
1,765,515	-				+2.3
1,765,515	-				+0.0
1,765,515	-				+0.6
1,765,515	-				-0.4
1,765,515	-				-0.6
1,765,515	-				-0.4
1,765,515	-				+1.4
1,765,533	+				+0.3
1,765,533	+				+0.9
1,765,919	+		ABIE53_001584	0.27	+0.1
1,765,919	+		ABIE53_001584	0.27	+0.4
1,765,919	+		ABIE53_001584	0.27	+2.2
1,765,919	+		ABIE53_001584	0.27	+0.7
1,765,919	+		ABIE53_001584	0.27	+1.6
1,765,919	+		ABIE53_001584	0.27	+0.9
1,766,021	+		ABIE53_001584	0.34	-0.6
1,766,021	+		ABIE53_001584	0.34	+1.1
1,766,022	-		ABIE53_001584	0.34	+2.1
1,766,153	+		ABIE53_001584	0.44	-1.0
1,766,153	+		ABIE53_001584	0.44	+0.8
1,766,153	+		ABIE53_001584	0.44	+0.2
1,766,153	+		ABIE53_001584	0.44	-0.1
1,766,153	+		ABIE53_001584	0.44	-0.6
1,766,153	+		ABIE53_001584	0.44	-1.1
1,766,153	+		ABIE53_001584	0.44	-1.6
1,766,153	+		ABIE53_001584	0.44	-0.7
1,766,153	+		ABIE53_001584	0.44	-0.6
1,766,153	+		ABIE53_001584	0.44	+0.3
1,766,153	+		ABIE53_001584	0.44	+1.4
1,766,154	-		ABIE53_001584	0.45	+0.1
1,766,154	-		ABIE53_001584	0.45	+0.5
1,766,154	-		ABIE53_001584	0.45	+0.9
1,766,154	-		ABIE53_001584	0.45	+0.1
1,766,154	-		ABIE53_001584	0.45	+1.4
1,766,154	-		ABIE53_001584	0.45	+1.6
1,766,154	-		ABIE53_001584	0.45	-0.1
1,766,154	-		ABIE53_001584	0.45	-0.5
1,766,154	-		ABIE53_001584	0.45	+4.3
1,766,154	-		ABIE53_001584	0.45	+0.4
1,766,154	-		ABIE53_001584	0.45	-1.1
1,766,154	-		ABIE53_001584	0.45	-2.1
1,766,154	-		ABIE53_001584	0.45	-1.3
1,766,172	-		ABIE53_001584	0.46	+4.0
1,766,172	-		ABIE53_001584	0.46	-0.1
1,766,291	+		ABIE53_001584	0.55	+0.1
1,766,291	+		ABIE53_001584	0.55	+0.8
1,766,291	+		ABIE53_001584	0.55	-0.6
1,766,291	+		ABIE53_001584	0.55	+3.2
1,766,292	-		ABIE53_001584	0.55	+0.3
1,766,292	-		ABIE53_001584	0.55	+0.2
1,766,292	-		ABIE53_001584	0.55	+0.3
1,766,405	+		ABIE53_001584	0.64	-2.9
1,766,405	+		ABIE53_001584	0.64	-0.3
1,766,406	-		ABIE53_001584	0.64	-0.4
1,766,406	-		ABIE53_001584	0.64	+0.7
1,766,406	-		ABIE53_001584	0.64	+1.4
1,766,414	+		ABIE53_001584	0.64	-1.7
1,766,414	+		ABIE53_001584	0.64	-0.1
1,766,414	+		ABIE53_001584	0.64	+2.4
1,766,414	+		ABIE53_001584	0.64	-0.6
1,766,414	+		ABIE53_001584	0.64	-1.5
1,766,414	+		ABIE53_001584	0.64	+1.4
1,766,414	+		ABIE53_001584	0.64	+1.4
1,766,414	+		ABIE53_001584	0.64	-1.4
1,766,414	+		ABIE53_001584	0.64	-0.3
1,766,415	-		ABIE53_001584	0.65	+1.4
1,766,415	-		ABIE53_001584	0.65	+1.4
1,766,415	-		ABIE53_001584	0.65	+0.9
1,766,415	-		ABIE53_001584	0.65	-0.4
1,766,415	-		ABIE53_001584	0.65	+1.4
1,766,415	-		ABIE53_001584	0.65	-0.9
1,766,525	+		ABIE53_001584	0.73	-0.1
1,766,525	+		ABIE53_001584	0.73	-0.5
1,766,525	+		ABIE53_001584	0.73	+1.4
1,766,526	-		ABIE53_001584	0.73	+3.0
1,766,526	-		ABIE53_001584	0.73	-0.9
1,766,526	-		ABIE53_001584	0.73	-1.0
1,766,526	-		ABIE53_001584	0.73	-0.1
1,766,574	+		ABIE53_001584	0.77	-0.9
1,766,738	+		ABIE53_001584	0.89	-1.7
1,766,738	+		ABIE53_001584	0.89	-2.4
1,766,738	+		ABIE53_001584	0.89	+2.4
1,766,738	+		ABIE53_001584	0.89	-0.1
1,766,755	+				-0.7
1,766,755	+				-2.3
1,766,756	-				-1.1
1,766,975	+				-1.1
1,766,975	+				-1.1
1,766,975	+				+0.4
1,766,975	+				+0.6
1,766,975	+				+1.4
1,766,975	+				-0.7
1,766,975	+				-1.7
1,766,975	+				-1.3
1,766,976	-				-1.4
1,766,976	-				-0.6
1,766,976	-				+0.1
1,766,976	-				-1.0
1,767,376	+				-1.1
1,767,376	+				+0.4
1,767,376	+				+1.4
1,767,376	+				+0.4
1,767,376	+				+1.3
1,767,376	+				+3.0
1,767,376	+				+1.4
1,767,380	+				+0.3
1,767,380	+				-1.6
1,767,380	+				-0.1
1,767,380	+				+0.3
1,767,380	+				+0.2
1,767,380	+				+0.4
1,767,530	+				-0.1
1,767,533	+				+0.4
1,767,533	+				+1.7
1,767,533	+				-2.7
1,767,533	+				-1.6
1,767,533	+				-0.1
1,767,533	+				+0.1
1,767,533	+				-1.1
1,767,533	+				+1.4
1,767,533	+				-1.9
1,767,533	+				-1.6
1,767,533	+				+0.1
1,767,565	+				+5.6
1,767,589	+				+1.4
1,767,589	+				+2.8
1,767,690	+				+0.4
1,767,690	+				-2.7
1,767,690	+				-0.1
1,767,756	+				+0.5
1,767,756	+				-1.4
1,767,756	+				+0.7
1,767,756	+				-2.7