Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000324 and ABIE53_000325 are separated by 39 nucleotides ABIE53_000325 and ABIE53_000326 are separated by 273 nucleotides
ABIE53_000324: ABIE53_000324 - L-arabinose transport system permease protein, at 342,653 to 343,657
_000324
ABIE53_000325: ABIE53_000325 - L-arabonate dehydrase, at 343,697 to 345,430
_000325
ABIE53_000326: ABIE53_000326 - hypothetical protein, at 345,704 to 346,042
_000326
Position (kb) 343
344
345
346 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 342.973 kb on + strand, within ABIE53_000324 at 342.973 kb on + strand, within ABIE53_000324 at 342.973 kb on + strand, within ABIE53_000324 at 342.973 kb on + strand, within ABIE53_000324 at 342.974 kb on - strand, within ABIE53_000324 at 342.974 kb on - strand, within ABIE53_000324 at 343.052 kb on + strand, within ABIE53_000324 at 343.053 kb on - strand, within ABIE53_000324 at 343.053 kb on - strand, within ABIE53_000324 at 343.112 kb on + strand, within ABIE53_000324 at 343.112 kb on + strand, within ABIE53_000324 at 343.112 kb on + strand, within ABIE53_000324 at 343.113 kb on - strand, within ABIE53_000324 at 343.113 kb on - strand, within ABIE53_000324 at 343.113 kb on - strand, within ABIE53_000324 at 343.161 kb on + strand, within ABIE53_000324 at 343.162 kb on - strand, within ABIE53_000324 at 343.291 kb on + strand, within ABIE53_000324 at 343.292 kb on - strand, within ABIE53_000324 at 343.399 kb on + strand, within ABIE53_000324 at 343.399 kb on + strand, within ABIE53_000324 at 343.400 kb on - strand, within ABIE53_000324 at 343.577 kb on + strand at 343.577 kb on + strand at 343.577 kb on + strand at 343.578 kb on - strand at 343.578 kb on - strand at 343.578 kb on - strand at 343.578 kb on - strand at 343.578 kb on - strand at 343.578 kb on - strand at 343.578 kb on - strand at 343.578 kb on - strand at 343.578 kb on - strand at 343.578 kb on - strand at 343.583 kb on + strand at 343.583 kb on + strand at 343.583 kb on + strand at 343.584 kb on - strand at 343.584 kb on - strand at 343.584 kb on - strand at 343.584 kb on - strand at 343.672 kb on + strand at 343.672 kb on + strand at 343.672 kb on + strand at 343.672 kb on + strand at 343.673 kb on - strand at 343.673 kb on - strand at 343.673 kb on - strand at 343.718 kb on - strand at 343.849 kb on + strand at 343.849 kb on + strand at 343.849 kb on + strand at 343.849 kb on + strand at 343.849 kb on + strand at 343.849 kb on + strand at 343.849 kb on + strand at 343.849 kb on + strand at 343.849 kb on + strand at 343.849 kb on + strand at 343.849 kb on + strand at 343.849 kb on + strand at 343.850 kb on - strand at 343.850 kb on - strand at 343.850 kb on - strand at 343.850 kb on - strand at 343.850 kb on - strand at 343.850 kb on - strand at 343.850 kb on - strand at 343.850 kb on - strand at 343.901 kb on + strand, within ABIE53_000325 at 343.901 kb on + strand, within ABIE53_000325 at 343.902 kb on - strand, within ABIE53_000325 at 343.902 kb on - strand, within ABIE53_000325 at 344.031 kb on - strand, within ABIE53_000325 at 344.086 kb on + strand, within ABIE53_000325 at 344.086 kb on + strand, within ABIE53_000325 at 344.086 kb on + strand, within ABIE53_000325 at 344.086 kb on + strand, within ABIE53_000325 at 344.086 kb on + strand, within ABIE53_000325 at 344.087 kb on - strand, within ABIE53_000325 at 344.182 kb on + strand, within ABIE53_000325 at 344.182 kb on + strand, within ABIE53_000325 at 344.183 kb on - strand, within ABIE53_000325 at 344.183 kb on - strand, within ABIE53_000325 at 344.571 kb on + strand, within ABIE53_000325 at 344.572 kb on - strand, within ABIE53_000325 at 344.645 kb on + strand, within ABIE53_000325 at 344.645 kb on + strand, within ABIE53_000325 at 344.645 kb on + strand, within ABIE53_000325 at 344.645 kb on + strand, within ABIE53_000325 at 344.646 kb on - strand, within ABIE53_000325 at 344.646 kb on - strand, within ABIE53_000325 at 344.646 kb on - strand, within ABIE53_000325 at 344.646 kb on - strand, within ABIE53_000325 at 344.646 kb on - strand, within ABIE53_000325 at 344.646 kb on - strand, within ABIE53_000325 at 344.666 kb on + strand, within ABIE53_000325 at 344.783 kb on + strand, within ABIE53_000325 at 344.784 kb on - strand, within ABIE53_000325 at 345.062 kb on - strand, within ABIE53_000325 at 345.062 kb on - strand, within ABIE53_000325 at 345.143 kb on + strand, within ABIE53_000325 at 345.143 kb on + strand, within ABIE53_000325 at 345.143 kb on + strand, within ABIE53_000325 at 345.144 kb on - strand, within ABIE53_000325 at 345.144 kb on - strand, within ABIE53_000325 at 345.326 kb on + strand at 345.329 kb on + strand at 345.329 kb on + strand at 345.329 kb on + strand at 345.329 kb on + strand at 345.329 kb on + strand at 345.329 kb on + strand at 345.329 kb on + strand at 345.329 kb on + strand at 345.329 kb on + strand at 345.329 kb on + strand at 345.329 kb on + strand at 345.329 kb on + strand at 345.330 kb on - strand at 345.330 kb on - strand at 345.330 kb on - strand at 345.330 kb on - strand at 345.330 kb on - strand at 345.330 kb on - strand at 345.330 kb on - strand at 345.330 kb on - strand at 345.338 kb on + strand at 345.338 kb on + strand at 345.338 kb on + strand at 345.339 kb on - strand at 345.339 kb on - strand at 345.455 kb on + strand at 345.456 kb on - strand at 345.456 kb on - strand at 345.456 kb on - strand at 345.487 kb on + strand at 345.487 kb on + strand at 345.488 kb on - strand at 345.488 kb on - strand at 345.539 kb on - strand at 345.629 kb on - strand at 345.648 kb on - strand at 345.752 kb on - strand, within ABIE53_000326 at 345.752 kb on - strand, within ABIE53_000326 at 345.928 kb on - strand, within ABIE53_000326 at 345.928 kb on - strand, within ABIE53_000326 at 345.928 kb on - strand, within ABIE53_000326 at 345.928 kb on - strand, within ABIE53_000326 at 345.928 kb on - strand, within ABIE53_000326 at 346.042 kb on + strand at 346.042 kb on + strand at 346.042 kb on + strand at 346.042 kb on + strand at 346.042 kb on + strand at 346.042 kb on + strand at 346.042 kb on + strand at 346.042 kb on + strand at 346.042 kb on + strand at 346.042 kb on + strand at 346.042 kb on + strand at 346.042 kb on + strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.043 kb on - strand at 346.075 kb on + strand at 346.075 kb on + strand at 346.075 kb on + strand at 346.075 kb on + strand at 346.075 kb on + strand at 346.075 kb on + strand at 346.075 kb on + strand at 346.075 kb on + strand at 346.076 kb on - strand at 346.076 kb on - strand at 346.076 kb on - strand at 346.076 kb on - strand at 346.079 kb on + strand at 346.079 kb on + strand at 346.079 kb on + strand at 346.079 kb on + strand at 346.079 kb on + strand at 346.079 kb on + strand at 346.079 kb on + strand at 346.079 kb on + strand at 346.079 kb on + strand at 346.079 kb on + strand at 346.079 kb on + strand at 346.079 kb on + strand at 346.080 kb on - strand at 346.080 kb on - strand at 346.080 kb on - strand at 346.080 kb on - strand at 346.080 kb on - strand at 346.080 kb on - strand at 346.080 kb on - strand at 346.080 kb on - strand at 346.080 kb on - strand at 346.080 kb on - strand at 346.080 kb on - strand at 346.080 kb on - strand at 346.080 kb on - strand at 346.080 kb on - strand at 346.080 kb on - strand at 346.080 kb on - strand at 346.080 kb on - strand at 346.087 kb on + strand at 346.087 kb on + strand at 346.087 kb on + strand at 346.088 kb on - strand at 346.101 kb on - strand at 346.119 kb on + strand at 346.119 kb on + strand at 346.119 kb on + strand at 346.119 kb on + strand at 346.120 kb on - strand at 346.120 kb on - strand at 346.120 kb on - strand at 346.202 kb on + strand at 346.202 kb on + strand at 346.202 kb on + strand at 346.203 kb on - strand at 346.203 kb on - strand at 346.209 kb on + strand at 346.210 kb on - strand at 346.236 kb on - strand at 346.245 kb on - strand at 346.245 kb on - strand at 346.249 kb on - strand at 346.249 kb on - strand at 346.249 kb on - strand at 346.257 kb on + strand at 346.257 kb on + strand at 346.257 kb on + strand at 346.257 kb on + strand at 346.257 kb on + strand at 346.257 kb on + strand at 346.258 kb on - strand at 346.258 kb on - strand at 346.258 kb on - strand at 346.258 kb on - strand at 346.258 kb on - strand at 346.258 kb on - strand at 346.259 kb on + strand at 346.259 kb on + strand at 346.259 kb on + strand at 346.259 kb on + strand at 346.259 kb on + strand at 346.260 kb on - strand at 346.260 kb on - strand at 346.260 kb on - strand at 346.260 kb on - strand at 346.334 kb on + strand at 346.335 kb on - strand at 346.338 kb on - strand at 346.375 kb on - strand at 346.426 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 342,973 + ABIE53_000324 0.32 +0.2 342,973 + ABIE53_000324 0.32 -2.0 342,973 + ABIE53_000324 0.32 -1.1 342,973 + ABIE53_000324 0.32 -2.1 342,974 - ABIE53_000324 0.32 -1.0 342,974 - ABIE53_000324 0.32 -0.3 343,052 + ABIE53_000324 0.40 -1.4 343,053 - ABIE53_000324 0.40 +1.3 343,053 - ABIE53_000324 0.40 -3.3 343,112 + ABIE53_000324 0.46 +1.5 343,112 + ABIE53_000324 0.46 +1.1 343,112 + ABIE53_000324 0.46 +3.4 343,113 - ABIE53_000324 0.46 -0.5 343,113 - ABIE53_000324 0.46 -0.8 343,113 - ABIE53_000324 0.46 +0.1 343,161 + ABIE53_000324 0.51 +1.7 343,162 - ABIE53_000324 0.51 -2.0 343,291 + ABIE53_000324 0.63 -0.0 343,292 - ABIE53_000324 0.64 -0.8 343,399 + ABIE53_000324 0.74 -0.3 343,399 + ABIE53_000324 0.74 +0.2 343,400 - ABIE53_000324 0.74 -1.5 343,577 + +0.2 343,577 + +3.4 343,577 + -1.7 343,578 - -2.2 343,578 - -0.8 343,578 - -0.0 343,578 - -1.0 343,578 - +1.7 343,578 - -1.9 343,578 - -0.8 343,578 - -0.5 343,578 - -1.6 343,578 - -2.0 343,583 + +1.5 343,583 + -0.7 343,583 + +2.0 343,584 - -2.1 343,584 - -0.5 343,584 - -2.3 343,584 - -2.4 343,672 + +2.5 343,672 + -0.4 343,672 + +1.5 343,672 + -2.2 343,673 - -1.8 343,673 - +0.5 343,673 - -1.8 343,718 - -1.2 343,849 + -0.4 343,849 + -1.3 343,849 + -2.3 343,849 + +1.5 343,849 + -2.8 343,849 + -1.4 343,849 + -1.6 343,849 + +1.0 343,849 + -1.5 343,849 + -1.5 343,849 + -2.3 343,849 + +1.5 343,850 - -1.0 343,850 - -2.3 343,850 - -0.8 343,850 - -1.5 343,850 - -2.4 343,850 - -1.0 343,850 - -1.0 343,850 - -3.0 343,901 + ABIE53_000325 0.12 -2.7 343,901 + ABIE53_000325 0.12 -0.5 343,902 - ABIE53_000325 0.12 -0.6 343,902 - ABIE53_000325 0.12 -2.8 344,031 - ABIE53_000325 0.19 +2.0 344,086 + ABIE53_000325 0.22 -1.8 344,086 + ABIE53_000325 0.22 -1.0 344,086 + ABIE53_000325 0.22 +0.7 344,086 + ABIE53_000325 0.22 -1.0 344,086 + ABIE53_000325 0.22 +0.5 344,087 - ABIE53_000325 0.22 -1.9 344,182 + ABIE53_000325 0.28 -0.8 344,182 + ABIE53_000325 0.28 -1.4 344,183 - ABIE53_000325 0.28 +1.5 344,183 - ABIE53_000325 0.28 +1.5 344,571 + ABIE53_000325 0.50 +0.5 344,572 - ABIE53_000325 0.50 +1.5 344,645 + ABIE53_000325 0.55 -2.2 344,645 + ABIE53_000325 0.55 +0.5 344,645 + ABIE53_000325 0.55 -1.8 344,645 + ABIE53_000325 0.55 -2.7 344,646 - ABIE53_000325 0.55 -0.8 344,646 - ABIE53_000325 0.55 -1.0 344,646 - ABIE53_000325 0.55 +0.8 344,646 - ABIE53_000325 0.55 -2.2 344,646 - ABIE53_000325 0.55 +0.4 344,646 - ABIE53_000325 0.55 -2.5 344,666 + ABIE53_000325 0.56 -3.0 344,783 + ABIE53_000325 0.63 -1.3 344,784 - ABIE53_000325 0.63 -2.6 345,062 - ABIE53_000325 0.79 -1.6 345,062 - ABIE53_000325 0.79 -3.0 345,143 + ABIE53_000325 0.83 +0.9 345,143 + ABIE53_000325 0.83 -0.3 345,143 + ABIE53_000325 0.83 -3.5 345,144 - ABIE53_000325 0.83 -1.8 345,144 - ABIE53_000325 0.83 -2.5 345,326 + -2.7 345,329 + +1.5 345,329 + -1.1 345,329 + -2.5 345,329 + -2.1 345,329 + -2.3 345,329 + -1.8 345,329 + -1.9 345,329 + +1.1 345,329 + -1.0 345,329 + -2.0 345,329 + -2.2 345,329 + -2.2 345,330 - -1.6 345,330 - -2.4 345,330 - +1.5 345,330 - -1.8 345,330 - +0.5 345,330 - -1.5 345,330 - -1.3 345,330 - -0.0 345,338 + +0.5 345,338 + -0.9 345,338 + -1.0 345,339 - -0.6 345,339 - +0.1 345,455 + -0.5 345,456 - -2.5 345,456 - -1.4 345,456 - +0.1 345,487 + -1.0 345,487 + -0.7 345,488 - +0.5 345,488 - +0.3 345,539 - -1.8 345,629 - +1.7 345,648 - -0.5 345,752 - ABIE53_000326 0.14 -1.2 345,752 - ABIE53_000326 0.14 -1.4 345,928 - ABIE53_000326 0.66 +0.1 345,928 - ABIE53_000326 0.66 -0.9 345,928 - ABIE53_000326 0.66 -1.5 345,928 - ABIE53_000326 0.66 -0.9 345,928 - ABIE53_000326 0.66 -1.8 346,042 + -0.5 346,042 + +1.5 346,042 + +0.4 346,042 + -0.8 346,042 + +0.9 346,042 + +0.4 346,042 + +0.4 346,042 + -1.8 346,042 + +2.7 346,042 + +0.3 346,042 + -1.4 346,042 + +2.5 346,043 - -0.2 346,043 - +5.0 346,043 - +1.2 346,043 - -0.3 346,043 - -0.9 346,043 - -0.5 346,043 - +0.5 346,043 - -0.9 346,043 - -1.0 346,075 + -3.1 346,075 + +1.6 346,075 + +1.2 346,075 + -0.6 346,075 + +1.5 346,075 + +1.5 346,075 + -0.5 346,075 + +0.8 346,076 - -0.9 346,076 - -2.2 346,076 - +0.6 346,076 - +1.0 346,079 + +0.5 346,079 + +1.8 346,079 + +0.2 346,079 + -1.6 346,079 + -0.0 346,079 + -2.0 346,079 + +1.3 346,079 + -0.6 346,079 + -0.0 346,079 + +1.5 346,079 + -1.2 346,079 + -1.5 346,080 - +4.5 346,080 - -1.5 346,080 - +0.4 346,080 - -1.5 346,080 - -0.2 346,080 - +1.1 346,080 - -1.5 346,080 - -1.0 346,080 - -1.8 346,080 - -0.6 346,080 - -1.6 346,080 - -0.3 346,080 - +1.5 346,080 - -1.8 346,080 - -1.3 346,080 - +0.6 346,080 - +0.3 346,087 + -0.4 346,087 + +0.5 346,087 + -0.5 346,088 - -0.5 346,101 - -1.5 346,119 + -3.2 346,119 + -2.3 346,119 + -2.9 346,119 + +0.7 346,120 - -1.3 346,120 - -0.9 346,120 - +0.4 346,202 + -0.0 346,202 + +2.2 346,202 + +1.5 346,203 - -2.6 346,203 - -1.2 346,209 + +0.1 346,210 - +3.0 346,236 - -0.0 346,245 - -3.2 346,245 - -2.3 346,249 - -0.5 346,249 - -1.6 346,249 - +1.5 346,257 + -1.8 346,257 + -0.0 346,257 + -0.8 346,257 + +1.2 346,257 + +1.8 346,257 + -0.0 346,258 - -1.6 346,258 - -1.4 346,258 - -1.4 346,258 - -0.0 346,258 - +0.3 346,258 - +0.5 346,259 + +1.5 346,259 + -1.0 346,259 + +0.9 346,259 + -0.1 346,259 + +0.5 346,260 - -2.8 346,260 - -0.8 346,260 - -2.8 346,260 - -2.6 346,334 + +0.3 346,335 - +4.7 346,338 - -2.3 346,375 - +2.2 346,426 - +2.5
Or see this region's nucleotide sequence