Experiment: MoYLS4 no iron
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt zupT and DVUA0137 are separated by 121 nucleotides DVUA0137 and DVUA0138 overlap by 14 nucleotides
DVUA0136: zupT - zinc transporter (TIGR), at 177,828 to 178,661
zupT
DVUA0137: DVUA0137 - response regulator (TIGR), at 178,783 to 179,430
DVUA0137
DVUA0138: DVUA0138 - sensor histidine kinase (TIGR), at 179,417 to 181,501
DVUA0138
Position (kb) 178
179
180 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 177.815 kb on + strand at 177.886 kb on + strand at 177.893 kb on + strand at 177.904 kb on + strand at 177.917 kb on - strand, within zupT at 177.969 kb on + strand, within zupT at 177.983 kb on - strand, within zupT at 178.060 kb on - strand, within zupT at 178.131 kb on - strand, within zupT at 178.178 kb on + strand, within zupT at 178.220 kb on + strand, within zupT at 178.235 kb on - strand, within zupT at 178.267 kb on + strand, within zupT at 178.267 kb on + strand, within zupT at 178.276 kb on - strand, within zupT at 178.428 kb on + strand, within zupT at 178.445 kb on + strand, within zupT at 178.453 kb on - strand, within zupT at 178.509 kb on + strand, within zupT at 178.543 kb on + strand, within zupT at 178.589 kb on + strand at 178.597 kb on - strand at 178.602 kb on + strand at 178.627 kb on - strand at 178.648 kb on - strand at 178.715 kb on + strand at 178.805 kb on + strand at 178.813 kb on - strand at 178.823 kb on - strand at 178.823 kb on - strand at 178.825 kb on - strand at 178.832 kb on - strand at 178.882 kb on - strand, within DVUA0137 at 179.093 kb on + strand, within DVUA0137 at 179.108 kb on - strand, within DVUA0137 at 179.162 kb on + strand, within DVUA0137 at 179.162 kb on + strand, within DVUA0137 at 179.170 kb on - strand, within DVUA0137 at 179.170 kb on - strand, within DVUA0137 at 179.208 kb on + strand, within DVUA0137 at 179.208 kb on + strand, within DVUA0137 at 179.261 kb on - strand, within DVUA0137 at 179.273 kb on + strand, within DVUA0137 at 179.302 kb on + strand, within DVUA0137 at 179.304 kb on - strand, within DVUA0137 at 179.376 kb on - strand at 179.383 kb on - strand at 179.479 kb on + strand at 179.504 kb on + strand at 179.535 kb on + strand at 179.539 kb on + strand at 179.548 kb on - strand at 179.644 kb on + strand, within DVUA0138 at 179.659 kb on + strand, within DVUA0138 at 179.664 kb on + strand, within DVUA0138 at 179.669 kb on + strand, within DVUA0138 at 179.688 kb on + strand, within DVUA0138 at 179.688 kb on + strand, within DVUA0138 at 179.688 kb on + strand, within DVUA0138 at 179.688 kb on + strand, within DVUA0138 at 179.688 kb on + strand, within DVUA0138 at 179.688 kb on + strand, within DVUA0138 at 179.688 kb on + strand, within DVUA0138 at 179.696 kb on - strand, within DVUA0138 at 179.725 kb on - strand, within DVUA0138 at 179.726 kb on + strand, within DVUA0138 at 179.736 kb on + strand, within DVUA0138 at 179.741 kb on + strand, within DVUA0138 at 179.744 kb on - strand, within DVUA0138 at 179.748 kb on - strand, within DVUA0138 at 179.819 kb on - strand, within DVUA0138 at 179.842 kb on - strand, within DVUA0138 at 179.946 kb on - strand, within DVUA0138 at 179.948 kb on + strand, within DVUA0138 at 179.960 kb on + strand, within DVUA0138 at 180.020 kb on - strand, within DVUA0138 at 180.046 kb on + strand, within DVUA0138 at 180.046 kb on + strand, within DVUA0138 at 180.046 kb on + strand, within DVUA0138 at 180.054 kb on - strand, within DVUA0138 at 180.125 kb on + strand, within DVUA0138 at 180.220 kb on + strand, within DVUA0138 at 180.273 kb on + strand, within DVUA0138 at 180.279 kb on + strand, within DVUA0138 at 180.279 kb on + strand, within DVUA0138 at 180.316 kb on - strand, within DVUA0138 at 180.340 kb on + strand, within DVUA0138 at 180.343 kb on - strand, within DVUA0138 at 180.412 kb on - strand, within DVUA0138
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 no iron remove 177,815 + -0.3 177,886 + +0.1 177,893 + +0.1 177,904 + -0.2 177,917 - zupT DVUA0136 0.11 -0.2 177,969 + zupT DVUA0136 0.17 +1.2 177,983 - zupT DVUA0136 0.19 +0.2 178,060 - zupT DVUA0136 0.28 -0.7 178,131 - zupT DVUA0136 0.36 +0.2 178,178 + zupT DVUA0136 0.42 -0.1 178,220 + zupT DVUA0136 0.47 +0.4 178,235 - zupT DVUA0136 0.49 -1.4 178,267 + zupT DVUA0136 0.53 -3.0 178,267 + zupT DVUA0136 0.53 +0.1 178,276 - zupT DVUA0136 0.54 -0.6 178,428 + zupT DVUA0136 0.72 -0.8 178,445 + zupT DVUA0136 0.74 -1.0 178,453 - zupT DVUA0136 0.75 +0.5 178,509 + zupT DVUA0136 0.82 -0.0 178,543 + zupT DVUA0136 0.86 +0.2 178,589 + -0.4 178,597 - -0.2 178,602 + -0.4 178,627 - -0.4 178,648 - +0.4 178,715 + -0.1 178,805 + -0.0 178,813 - -0.9 178,823 - +0.2 178,823 - -1.5 178,825 - -0.2 178,832 - -0.8 178,882 - DVUA0137 0.15 -0.1 179,093 + DVUA0137 0.48 +0.0 179,108 - DVUA0137 0.50 -0.5 179,162 + DVUA0137 0.58 -0.1 179,162 + DVUA0137 0.58 +0.6 179,170 - DVUA0137 0.60 -0.8 179,170 - DVUA0137 0.60 -0.4 179,208 + DVUA0137 0.66 -0.4 179,208 + DVUA0137 0.66 -1.3 179,261 - DVUA0137 0.74 -0.1 179,273 + DVUA0137 0.76 -0.2 179,302 + DVUA0137 0.80 -0.6 179,304 - DVUA0137 0.80 -0.8 179,376 - +1.1 179,383 - +0.7 179,479 + -0.0 179,504 + -0.5 179,535 + +0.0 179,539 + +1.4 179,548 - +2.5 179,644 + DVUA0138 0.11 -0.3 179,659 + DVUA0138 0.12 +0.5 179,664 + DVUA0138 0.12 +0.7 179,669 + DVUA0138 0.12 +0.7 179,688 + DVUA0138 0.13 -0.1 179,688 + DVUA0138 0.13 +0.5 179,688 + DVUA0138 0.13 +0.4 179,688 + DVUA0138 0.13 -0.6 179,688 + DVUA0138 0.13 -0.1 179,688 + DVUA0138 0.13 +0.3 179,688 + DVUA0138 0.13 -0.2 179,696 - DVUA0138 0.13 -0.1 179,725 - DVUA0138 0.15 +1.0 179,726 + DVUA0138 0.15 -0.4 179,736 + DVUA0138 0.15 -0.5 179,741 + DVUA0138 0.16 -0.4 179,744 - DVUA0138 0.16 +0.3 179,748 - DVUA0138 0.16 -0.2 179,819 - DVUA0138 0.19 +1.1 179,842 - DVUA0138 0.20 -1.3 179,946 - DVUA0138 0.25 +0.8 179,948 + DVUA0138 0.25 +0.1 179,960 + DVUA0138 0.26 -0.1 180,020 - DVUA0138 0.29 +0.9 180,046 + DVUA0138 0.30 +0.3 180,046 + DVUA0138 0.30 -0.6 180,046 + DVUA0138 0.30 +2.5 180,054 - DVUA0138 0.31 +0.3 180,125 + DVUA0138 0.34 -0.2 180,220 + DVUA0138 0.39 -0.5 180,273 + DVUA0138 0.41 +0.3 180,279 + DVUA0138 0.41 +0.1 180,279 + DVUA0138 0.41 -0.1 180,316 - DVUA0138 0.43 -0.1 180,340 + DVUA0138 0.44 -0.1 180,343 - DVUA0138 0.44 +1.5 180,412 - DVUA0138 0.48 -0.2
Or see this region's nucleotide sequence