Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3969

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3968 and Dshi_3969 are separated by 160 nucleotidesDshi_3969 and Dshi_3970 are separated by 167 nucleotidesDshi_3970 and Dshi_3971 are separated by 124 nucleotides Dshi_3968: Dshi_3968 - cation efflux protein (RefSeq), at 30,885 to 31,736 _3968 Dshi_3969: Dshi_3969 - hypothetical protein (RefSeq), at 31,897 to 32,124 _3969 Dshi_3970: Dshi_3970 - transcriptional regulator, XRE family (RefSeq), at 32,292 to 32,549 _3970 Dshi_3971: Dshi_3971 - hypothetical protein (RefSeq), at 32,674 to 32,994 _3971 Position (kb) 31 32 33Strain fitness (log2 ratio) -2 -1 0 1at 30.948 kb on + strandat 30.948 kb on + strandat 30.948 kb on + strandat 30.948 kb on + strandat 30.948 kb on + strandat 30.948 kb on + strandat 30.948 kb on + strandat 30.956 kb on - strandat 30.956 kb on - strandat 30.956 kb on - strandat 30.995 kb on + strand, within Dshi_3968at 30.997 kb on + strand, within Dshi_3968at 30.997 kb on + strand, within Dshi_3968at 31.005 kb on - strand, within Dshi_3968at 31.008 kb on + strand, within Dshi_3968at 31.016 kb on - strand, within Dshi_3968at 31.016 kb on - strand, within Dshi_3968at 31.018 kb on + strand, within Dshi_3968at 31.033 kb on + strand, within Dshi_3968at 31.043 kb on + strand, within Dshi_3968at 31.043 kb on + strand, within Dshi_3968at 31.043 kb on + strand, within Dshi_3968at 31.043 kb on + strand, within Dshi_3968at 31.051 kb on - strand, within Dshi_3968at 31.132 kb on - strand, within Dshi_3968at 31.133 kb on + strand, within Dshi_3968at 31.135 kb on + strand, within Dshi_3968at 31.143 kb on - strand, within Dshi_3968at 31.221 kb on - strand, within Dshi_3968at 31.401 kb on - strand, within Dshi_3968at 31.407 kb on - strand, within Dshi_3968at 31.420 kb on + strand, within Dshi_3968at 31.433 kb on - strand, within Dshi_3968at 31.434 kb on - strand, within Dshi_3968at 31.458 kb on + strand, within Dshi_3968at 31.523 kb on + strand, within Dshi_3968at 31.531 kb on - strand, within Dshi_3968at 31.531 kb on - strand, within Dshi_3968at 31.538 kb on - strand, within Dshi_3968at 31.622 kb on + strand, within Dshi_3968at 31.622 kb on + strand, within Dshi_3968at 31.636 kb on + strand, within Dshi_3968at 31.644 kb on - strand, within Dshi_3968at 31.644 kb on - strand, within Dshi_3968at 31.721 kb on + strandat 31.721 kb on + strandat 31.745 kb on - strandat 31.888 kb on - strandat 31.921 kb on - strand, within Dshi_3969at 31.992 kb on + strand, within Dshi_3969at 31.997 kb on + strand, within Dshi_3969at 32.000 kb on - strand, within Dshi_3969at 32.015 kb on - strand, within Dshi_3969at 32.017 kb on - strand, within Dshi_3969at 32.017 kb on - strand, within Dshi_3969at 32.017 kb on - strand, within Dshi_3969at 32.017 kb on - strand, within Dshi_3969at 32.017 kb on - strand, within Dshi_3969at 32.017 kb on - strand, within Dshi_3969at 32.033 kb on - strand, within Dshi_3969at 32.068 kb on - strand, within Dshi_3969at 32.070 kb on + strand, within Dshi_3969at 32.078 kb on - strand, within Dshi_3969at 32.084 kb on + strand, within Dshi_3969at 32.089 kb on + strand, within Dshi_3969at 32.102 kb on + strandat 32.108 kb on + strandat 32.116 kb on - strandat 32.135 kb on + strandat 32.162 kb on - strandat 32.185 kb on - strandat 32.192 kb on + strandat 32.242 kb on + strandat 32.242 kb on + strandat 32.261 kb on - strandat 32.310 kb on + strandat 32.318 kb on - strand, within Dshi_3970at 32.318 kb on - strand, within Dshi_3970at 32.318 kb on - strand, within Dshi_3970at 32.318 kb on - strand, within Dshi_3970at 32.364 kb on - strand, within Dshi_3970at 32.367 kb on + strand, within Dshi_3970at 32.367 kb on + strand, within Dshi_3970at 32.367 kb on + strand, within Dshi_3970at 32.367 kb on + strand, within Dshi_3970at 32.367 kb on + strand, within Dshi_3970at 32.367 kb on + strand, within Dshi_3970at 32.367 kb on + strand, within Dshi_3970at 32.375 kb on - strand, within Dshi_3970at 32.375 kb on - strand, within Dshi_3970at 32.375 kb on - strand, within Dshi_3970at 32.375 kb on - strand, within Dshi_3970at 32.375 kb on - strand, within Dshi_3970at 32.375 kb on - strand, within Dshi_3970at 32.375 kb on - strand, within Dshi_3970at 32.382 kb on - strand, within Dshi_3970at 32.382 kb on - strand, within Dshi_3970at 32.433 kb on - strand, within Dshi_3970at 32.469 kb on + strand, within Dshi_3970at 32.469 kb on + strand, within Dshi_3970at 32.476 kb on - strand, within Dshi_3970at 32.486 kb on + strand, within Dshi_3970at 32.489 kb on - strand, within Dshi_3970at 32.489 kb on - strand, within Dshi_3970at 32.642 kb on + strandat 32.644 kb on + strandat 32.652 kb on - strandat 32.652 kb on - strandat 32.652 kb on - strandat 32.664 kb on - strandat 32.686 kb on - strandat 32.730 kb on + strand, within Dshi_3971at 32.730 kb on + strand, within Dshi_3971at 32.738 kb on - strand, within Dshi_3971at 32.749 kb on + strand, within Dshi_3971at 32.762 kb on - strand, within Dshi_3971at 32.762 kb on - strand, within Dshi_3971at 32.762 kb on - strand, within Dshi_3971at 32.789 kb on + strand, within Dshi_3971at 32.861 kb on + strand, within Dshi_3971at 32.876 kb on + strand, within Dshi_3971at 32.886 kb on + strand, within Dshi_3971at 32.899 kb on - strand, within Dshi_3971at 32.944 kb on - strand, within Dshi_3971at 32.953 kb on - strand, within Dshi_3971at 32.953 kb on - strand, within Dshi_3971at 33.001 kb on + strandat 33.009 kb on - strandat 33.016 kb on - strandat 33.016 kb on - strandat 33.098 kb on + strandat 33.105 kb on + strandat 33.114 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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30,948 + +0.1
30,948 + +0.2
30,948 + +0.1
30,948 + -1.8
30,948 + -1.0
30,948 + +0.4
30,948 + +0.1
30,956 - -0.2
30,956 - +0.5
30,956 - +0.1
30,995 + Dshi_3968 0.13 +0.6
30,997 + Dshi_3968 0.13 -0.5
30,997 + Dshi_3968 0.13 +0.0
31,005 - Dshi_3968 0.14 -0.4
31,008 + Dshi_3968 0.14 +0.0
31,016 - Dshi_3968 0.15 +0.1
31,016 - Dshi_3968 0.15 +0.5
31,018 + Dshi_3968 0.16 -0.7
31,033 + Dshi_3968 0.17 -1.6
31,043 + Dshi_3968 0.19 -0.2
31,043 + Dshi_3968 0.19 -0.4
31,043 + Dshi_3968 0.19 -0.4
31,043 + Dshi_3968 0.19 +1.5
31,051 - Dshi_3968 0.19 +1.0
31,132 - Dshi_3968 0.29 -0.0
31,133 + Dshi_3968 0.29 +0.5
31,135 + Dshi_3968 0.29 +0.6
31,143 - Dshi_3968 0.30 +0.0
31,221 - Dshi_3968 0.39 +0.1
31,401 - Dshi_3968 0.61 +0.3
31,407 - Dshi_3968 0.61 -0.4
31,420 + Dshi_3968 0.63 +0.0
31,433 - Dshi_3968 0.64 -1.6
31,434 - Dshi_3968 0.64 -0.9
31,458 + Dshi_3968 0.67 -0.3
31,523 + Dshi_3968 0.75 +0.3
31,531 - Dshi_3968 0.76 -0.8
31,531 - Dshi_3968 0.76 +0.0
31,538 - Dshi_3968 0.77 +0.2
31,622 + Dshi_3968 0.87 -0.6
31,622 + Dshi_3968 0.87 +0.4
31,636 + Dshi_3968 0.88 +0.3
31,644 - Dshi_3968 0.89 +0.1
31,644 - Dshi_3968 0.89 +0.1
31,721 + +0.0
31,721 + -0.3
31,745 - +0.0
31,888 - -0.5
31,921 - Dshi_3969 0.11 +0.1
31,992 + Dshi_3969 0.42 -0.4
31,997 + Dshi_3969 0.44 +1.6
32,000 - Dshi_3969 0.45 +0.1
32,015 - Dshi_3969 0.52 +0.2
32,017 - Dshi_3969 0.53 -1.0
32,017 - Dshi_3969 0.53 +0.4
32,017 - Dshi_3969 0.53 +0.6
32,017 - Dshi_3969 0.53 +0.3
32,017 - Dshi_3969 0.53 -1.7
32,017 - Dshi_3969 0.53 +0.2
32,033 - Dshi_3969 0.60 +0.2
32,068 - Dshi_3969 0.75 -0.6
32,070 + Dshi_3969 0.76 +0.3
32,078 - Dshi_3969 0.79 +1.4
32,084 + Dshi_3969 0.82 -0.4
32,089 + Dshi_3969 0.84 +0.4
32,102 + +0.2
32,108 + -1.6
32,116 - -0.3
32,135 + -1.8
32,162 - -0.7
32,185 - +0.2
32,192 + -0.4
32,242 + -1.2
32,242 + -1.3
32,261 - -0.2
32,310 + +0.1
32,318 - Dshi_3970 0.10 +0.6
32,318 - Dshi_3970 0.10 -1.4
32,318 - Dshi_3970 0.10 -0.1
32,318 - Dshi_3970 0.10 +0.3
32,364 - Dshi_3970 0.28 +0.1
32,367 + Dshi_3970 0.29 -0.2
32,367 + Dshi_3970 0.29 -0.6
32,367 + Dshi_3970 0.29 -1.6
32,367 + Dshi_3970 0.29 -2.6
32,367 + Dshi_3970 0.29 +0.2
32,367 + Dshi_3970 0.29 -0.4
32,367 + Dshi_3970 0.29 +0.0
32,375 - Dshi_3970 0.32 +0.5
32,375 - Dshi_3970 0.32 +0.3
32,375 - Dshi_3970 0.32 -0.4
32,375 - Dshi_3970 0.32 +0.2
32,375 - Dshi_3970 0.32 -0.2
32,375 - Dshi_3970 0.32 -0.2
32,375 - Dshi_3970 0.32 -0.0
32,382 - Dshi_3970 0.35 +0.3
32,382 - Dshi_3970 0.35 -1.0
32,433 - Dshi_3970 0.55 -0.4
32,469 + Dshi_3970 0.69 -0.3
32,469 + Dshi_3970 0.69 -0.7
32,476 - Dshi_3970 0.71 +0.1
32,486 + Dshi_3970 0.75 +0.4
32,489 - Dshi_3970 0.76 +0.7
32,489 - Dshi_3970 0.76 -1.0
32,642 + -0.2
32,644 + +0.0
32,652 - -1.1
32,652 - -0.1
32,652 - +0.5
32,664 - -0.1
32,686 - +1.0
32,730 + Dshi_3971 0.17 -0.5
32,730 + Dshi_3971 0.17 -1.2
32,738 - Dshi_3971 0.20 -0.7
32,749 + Dshi_3971 0.23 -0.2
32,762 - Dshi_3971 0.27 +0.4
32,762 - Dshi_3971 0.27 -0.6
32,762 - Dshi_3971 0.27 +0.8
32,789 + Dshi_3971 0.36 -0.6
32,861 + Dshi_3971 0.58 -1.2
32,876 + Dshi_3971 0.63 +0.0
32,886 + Dshi_3971 0.66 -0.7
32,899 - Dshi_3971 0.70 -0.6
32,944 - Dshi_3971 0.84 +0.4
32,953 - Dshi_3971 0.87 +1.1
32,953 - Dshi_3971 0.87 +0.2
33,001 + +0.5
33,009 - -0.7
33,016 - -2.3
33,016 - +0.2
33,098 + -2.7
33,105 + -1.3
33,114 + -0.7

Or see this region's nucleotide sequence