Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2138

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2136 and Dshi_2137 overlap by 4 nucleotidesDshi_2137 and Dshi_2138 are separated by 31 nucleotidesDshi_2138 and Dshi_2139 are separated by 73 nucleotides Dshi_2136: Dshi_2136 - stationary-phase survival protein SurE (RefSeq), at 2,266,110 to 2,266,895 _2136 Dshi_2137: Dshi_2137 - protein-L-isoaspartate O-methyltransferase (RefSeq), at 2,266,892 to 2,267,542 _2137 Dshi_2138: Dshi_2138 - peptidase M23B (RefSeq), at 2,267,574 to 2,268,803 _2138 Dshi_2139: Dshi_2139 - protein of unknown function DUF6 transmembrane (RefSeq), at 2,268,877 to 2,269,770 _2139 Position (kb) 2267 2268 2269Strain fitness (log2 ratio) -2 -1 0 1at 2266.711 kb on - strand, within Dshi_2136at 2268.878 kb on - strandat 2269.036 kb on - strand, within Dshi_2139at 2269.234 kb on - strand, within Dshi_2139at 2269.234 kb on - strand, within Dshi_2139at 2269.375 kb on - strand, within Dshi_2139at 2269.553 kb on + strand, within Dshi_2139at 2269.561 kb on - strand, within Dshi_2139at 2269.576 kb on + strand, within Dshi_2139at 2269.708 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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2,266,711 - Dshi_2136 0.76 -2.4
2,268,878 - -0.6
2,269,036 - Dshi_2139 0.18 -0.6
2,269,234 - Dshi_2139 0.40 -0.0
2,269,234 - Dshi_2139 0.40 +0.7
2,269,375 - Dshi_2139 0.56 +0.3
2,269,553 + Dshi_2139 0.76 -0.5
2,269,561 - Dshi_2139 0.77 +0.4
2,269,576 + Dshi_2139 0.78 -0.2
2,269,708 - +0.1

Or see this region's nucleotide sequence