Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0948

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0946 and Dshi_0947 are separated by 57 nucleotidesDshi_0947 and Dshi_0948 are separated by 129 nucleotidesDshi_0948 and Dshi_0949 are separated by 51 nucleotidesDshi_0949 and Dshi_0950 are separated by 109 nucleotides Dshi_0946: Dshi_0946 - hypothetical protein (RefSeq), at 971,323 to 971,721 _0946 Dshi_0947: Dshi_0947 - Aminoacyl-tRNA hydrolase (RefSeq), at 971,779 to 972,486 _0947 Dshi_0948: Dshi_0948 - L-lactate dehydrogenase (cytochrome) (RefSeq), at 972,616 to 973,788 _0948 Dshi_0949: Dshi_0949 - hypothetical protein (RefSeq), at 973,840 to 974,457 _0949 Dshi_0950: Dshi_0950 - ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 (RefSeq), at 974,567 to 975,202 _0950 Position (kb) 972 973 974Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 971.658 kb on + strand, within Dshi_0946at 971.663 kb on + strand, within Dshi_0946at 971.668 kb on + strand, within Dshi_0946at 971.668 kb on + strand, within Dshi_0946at 971.668 kb on + strand, within Dshi_0946at 971.668 kb on + strand, within Dshi_0946at 971.668 kb on + strand, within Dshi_0946at 971.671 kb on - strand, within Dshi_0946at 971.673 kb on + strand, within Dshi_0946at 971.691 kb on - strandat 971.738 kb on - strandat 971.770 kb on + strandat 971.778 kb on - strandat 971.788 kb on - strandat 971.903 kb on - strand, within Dshi_0947at 972.742 kb on - strand, within Dshi_0948at 972.747 kb on - strand, within Dshi_0948at 972.815 kb on + strand, within Dshi_0948at 972.815 kb on + strand, within Dshi_0948at 972.823 kb on - strand, within Dshi_0948at 972.823 kb on - strand, within Dshi_0948at 972.823 kb on - strand, within Dshi_0948at 972.838 kb on + strand, within Dshi_0948at 972.846 kb on - strand, within Dshi_0948at 972.885 kb on + strand, within Dshi_0948at 972.893 kb on - strand, within Dshi_0948at 972.922 kb on + strand, within Dshi_0948at 972.930 kb on - strand, within Dshi_0948at 972.930 kb on - strand, within Dshi_0948at 972.975 kb on + strand, within Dshi_0948at 972.975 kb on + strand, within Dshi_0948at 972.977 kb on + strand, within Dshi_0948at 972.983 kb on - strand, within Dshi_0948at 972.985 kb on - strand, within Dshi_0948at 973.064 kb on + strand, within Dshi_0948at 973.064 kb on - strand, within Dshi_0948at 973.090 kb on - strand, within Dshi_0948at 973.090 kb on - strand, within Dshi_0948at 973.090 kb on - strand, within Dshi_0948at 973.097 kb on + strand, within Dshi_0948at 973.203 kb on - strandat 973.248 kb on + strand, within Dshi_0948at 973.256 kb on - strand, within Dshi_0948at 973.256 kb on - strand, within Dshi_0948at 973.265 kb on + strand, within Dshi_0948at 973.273 kb on - strand, within Dshi_0948at 973.288 kb on - strand, within Dshi_0948at 973.373 kb on - strand, within Dshi_0948at 973.385 kb on - strand, within Dshi_0948at 973.494 kb on + strand, within Dshi_0948at 973.608 kb on + strand, within Dshi_0948at 973.616 kb on - strand, within Dshi_0948at 973.616 kb on - strand, within Dshi_0948at 973.741 kb on - strandat 973.889 kb on - strandat 973.889 kb on - strandat 973.903 kb on - strand, within Dshi_0949at 974.001 kb on - strand, within Dshi_0949at 974.013 kb on + strand, within Dshi_0949at 974.070 kb on + strand, within Dshi_0949at 974.168 kb on + strand, within Dshi_0949at 974.235 kb on + strand, within Dshi_0949at 974.243 kb on - strand, within Dshi_0949at 974.413 kb on + strandat 974.439 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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971,658 + Dshi_0946 0.84 +0.4
971,663 + Dshi_0946 0.85 +0.5
971,668 + Dshi_0946 0.86 -0.6
971,668 + Dshi_0946 0.86 -0.8
971,668 + Dshi_0946 0.86 -1.9
971,668 + Dshi_0946 0.86 -0.2
971,668 + Dshi_0946 0.86 +0.7
971,671 - Dshi_0946 0.87 +0.0
971,673 + Dshi_0946 0.88 -0.7
971,691 - -0.5
971,738 - +0.1
971,770 + +0.4
971,778 - +2.3
971,788 - +1.1
971,903 - Dshi_0947 0.18 -0.7
972,742 - Dshi_0948 0.11 -0.4
972,747 - Dshi_0948 0.11 -1.1
972,815 + Dshi_0948 0.17 -1.1
972,815 + Dshi_0948 0.17 -0.9
972,823 - Dshi_0948 0.18 -0.6
972,823 - Dshi_0948 0.18 +0.5
972,823 - Dshi_0948 0.18 -1.0
972,838 + Dshi_0948 0.19 +0.1
972,846 - Dshi_0948 0.20 -1.1
972,885 + Dshi_0948 0.23 -0.5
972,893 - Dshi_0948 0.24 -0.3
972,922 + Dshi_0948 0.26 -1.2
972,930 - Dshi_0948 0.27 -0.7
972,930 - Dshi_0948 0.27 -1.1
972,975 + Dshi_0948 0.31 -0.6
972,975 + Dshi_0948 0.31 -0.9
972,977 + Dshi_0948 0.31 -0.8
972,983 - Dshi_0948 0.31 +1.7
972,985 - Dshi_0948 0.31 -2.4
973,064 + Dshi_0948 0.38 -0.8
973,064 - Dshi_0948 0.38 -1.6
973,090 - Dshi_0948 0.40 -0.4
973,090 - Dshi_0948 0.40 -1.3
973,090 - Dshi_0948 0.40 -0.7
973,097 + Dshi_0948 0.41 -1.6
973,203 - -0.9
973,248 + Dshi_0948 0.54 -1.5
973,256 - Dshi_0948 0.55 -0.8
973,256 - Dshi_0948 0.55 -0.8
973,265 + Dshi_0948 0.55 -1.1
973,273 - Dshi_0948 0.56 -0.0
973,288 - Dshi_0948 0.57 -0.5
973,373 - Dshi_0948 0.65 -2.8
973,385 - Dshi_0948 0.66 -2.4
973,494 + Dshi_0948 0.75 +0.5
973,608 + Dshi_0948 0.85 -0.6
973,616 - Dshi_0948 0.85 -2.8
973,616 - Dshi_0948 0.85 -0.8
973,741 - -1.4
973,889 - +0.4
973,889 - +0.3
973,903 - Dshi_0949 0.10 +1.4
974,001 - Dshi_0949 0.26 -0.1
974,013 + Dshi_0949 0.28 +1.4
974,070 + Dshi_0949 0.37 +1.1
974,168 + Dshi_0949 0.53 +1.1
974,235 + Dshi_0949 0.64 +0.3
974,243 - Dshi_0949 0.65 -0.4
974,413 + +0.3
974,439 - -0.8

Or see this region's nucleotide sequence