Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0447 and Dshi_0448 are separated by 316 nucleotides Dshi_0448 and Dshi_0449 are separated by 54 nucleotides Dshi_0449 and Dshi_0450 are separated by 103 nucleotides Dshi_0450 and Dshi_0451 are separated by 26 nucleotides
Dshi_0447: Dshi_0447 - transcriptional regulator, Crp/Fnr family (RefSeq), at 434,981 to 435,769
_0447
Dshi_0448: Dshi_0448 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 436,086 to 437,696
_0448
Dshi_0449: Dshi_0449 - two component transcriptional regulator, winged helix family (RefSeq), at 437,751 to 438,434
_0449
Dshi_0450: Dshi_0450 - coenzyme PQQ biosynthesis protein A (RefSeq), at 438,538 to 438,636
_0450
Dshi_0451: Dshi_0451 - coenzyme PQQ biosynthesis protein B (RefSeq), at 438,663 to 439,556
_0451
Position (kb) 436
437
438 Strain fitness (log2 ratio) -2
-1
0
1
2 at 435.139 kb on - strand, within Dshi_0447 at 435.251 kb on + strand, within Dshi_0447 at 435.259 kb on - strand, within Dshi_0447 at 435.278 kb on + strand, within Dshi_0447 at 435.301 kb on + strand, within Dshi_0447 at 435.301 kb on + strand, within Dshi_0447 at 435.301 kb on + strand, within Dshi_0447 at 435.309 kb on - strand, within Dshi_0447 at 435.309 kb on - strand, within Dshi_0447 at 435.424 kb on + strand, within Dshi_0447 at 435.427 kb on - strand, within Dshi_0447 at 435.427 kb on - strand, within Dshi_0447 at 435.427 kb on - strand, within Dshi_0447 at 435.462 kb on + strand, within Dshi_0447 at 435.462 kb on + strand, within Dshi_0447 at 435.462 kb on + strand, within Dshi_0447 at 435.470 kb on - strand, within Dshi_0447 at 435.549 kb on + strand, within Dshi_0447 at 435.587 kb on - strand, within Dshi_0447 at 435.600 kb on + strand, within Dshi_0447 at 435.601 kb on - strand, within Dshi_0447 at 435.653 kb on - strand, within Dshi_0447 at 435.653 kb on - strand, within Dshi_0447 at 435.718 kb on - strand at 435.758 kb on - strand at 435.789 kb on + strand at 435.789 kb on + strand at 435.789 kb on + strand at 435.789 kb on + strand at 435.791 kb on + strand at 435.797 kb on - strand at 435.797 kb on - strand at 435.840 kb on + strand at 435.840 kb on + strand at 435.841 kb on + strand at 435.848 kb on - strand at 435.867 kb on - strand at 435.880 kb on + strand at 435.884 kb on - strand at 435.885 kb on + strand at 435.891 kb on + strand at 435.893 kb on - strand at 435.899 kb on - strand at 435.933 kb on + strand at 435.933 kb on + strand at 435.935 kb on + strand at 435.941 kb on - strand at 435.941 kb on - strand at 435.941 kb on - strand at 435.941 kb on - strand at 435.943 kb on - strand at 435.948 kb on + strand at 435.956 kb on - strand at 435.956 kb on - strand at 435.956 kb on - strand at 435.985 kb on + strand at 436.019 kb on + strand at 436.025 kb on - strand at 436.027 kb on - strand at 436.073 kb on + strand at 436.076 kb on - strand at 436.076 kb on - strand at 436.078 kb on + strand at 436.106 kb on + strand at 436.109 kb on + strand at 436.141 kb on + strand at 436.151 kb on + strand at 436.167 kb on + strand at 436.212 kb on - strand at 436.220 kb on + strand at 436.228 kb on - strand at 436.243 kb on + strand at 436.251 kb on - strand, within Dshi_0448 at 436.258 kb on + strand, within Dshi_0448 at 436.301 kb on + strand, within Dshi_0448 at 436.311 kb on + strand, within Dshi_0448 at 436.311 kb on + strand, within Dshi_0448 at 436.320 kb on + strand, within Dshi_0448 at 436.320 kb on + strand, within Dshi_0448 at 436.391 kb on + strand, within Dshi_0448 at 436.401 kb on + strand, within Dshi_0448 at 436.401 kb on + strand, within Dshi_0448 at 436.401 kb on + strand, within Dshi_0448 at 436.401 kb on + strand, within Dshi_0448 at 436.498 kb on + strand, within Dshi_0448 at 436.543 kb on + strand, within Dshi_0448 at 436.550 kb on + strand, within Dshi_0448 at 436.563 kb on + strand, within Dshi_0448 at 436.582 kb on + strand, within Dshi_0448 at 436.615 kb on - strand, within Dshi_0448 at 436.620 kb on - strand, within Dshi_0448 at 436.620 kb on - strand, within Dshi_0448 at 436.622 kb on + strand, within Dshi_0448 at 436.632 kb on + strand, within Dshi_0448 at 436.649 kb on + strand, within Dshi_0448 at 436.676 kb on - strand, within Dshi_0448 at 436.678 kb on + strand at 436.688 kb on + strand, within Dshi_0448 at 436.690 kb on + strand, within Dshi_0448 at 436.690 kb on + strand, within Dshi_0448 at 436.697 kb on - strand, within Dshi_0448 at 436.700 kb on + strand, within Dshi_0448 at 436.707 kb on + strand, within Dshi_0448 at 436.707 kb on + strand, within Dshi_0448 at 436.708 kb on - strand, within Dshi_0448 at 436.708 kb on - strand, within Dshi_0448 at 436.715 kb on - strand, within Dshi_0448 at 436.749 kb on + strand, within Dshi_0448 at 436.751 kb on + strand, within Dshi_0448 at 436.751 kb on + strand, within Dshi_0448 at 436.767 kb on + strand, within Dshi_0448 at 436.850 kb on + strand, within Dshi_0448 at 436.857 kb on + strand, within Dshi_0448 at 436.884 kb on + strand, within Dshi_0448 at 436.893 kb on + strand, within Dshi_0448 at 436.898 kb on + strand, within Dshi_0448 at 436.957 kb on - strand, within Dshi_0448 at 436.978 kb on + strand, within Dshi_0448 at 437.024 kb on + strand, within Dshi_0448 at 437.027 kb on - strand, within Dshi_0448 at 437.043 kb on + strand, within Dshi_0448 at 437.052 kb on + strand, within Dshi_0448 at 437.075 kb on - strand, within Dshi_0448 at 437.106 kb on - strand, within Dshi_0448 at 437.170 kb on - strand, within Dshi_0448 at 437.170 kb on - strand, within Dshi_0448 at 437.176 kb on + strand, within Dshi_0448 at 437.177 kb on + strand, within Dshi_0448 at 437.184 kb on - strand, within Dshi_0448 at 437.196 kb on + strand, within Dshi_0448 at 437.201 kb on + strand, within Dshi_0448 at 437.209 kb on - strand, within Dshi_0448 at 437.209 kb on - strand, within Dshi_0448 at 437.224 kb on - strand, within Dshi_0448 at 437.227 kb on + strand, within Dshi_0448 at 437.235 kb on - strand, within Dshi_0448 at 437.235 kb on - strand, within Dshi_0448 at 437.235 kb on - strand, within Dshi_0448 at 437.253 kb on + strand, within Dshi_0448 at 437.260 kb on - strand, within Dshi_0448 at 437.262 kb on + strand, within Dshi_0448 at 437.315 kb on + strand, within Dshi_0448 at 437.318 kb on - strand, within Dshi_0448 at 437.323 kb on - strand, within Dshi_0448 at 437.323 kb on - strand, within Dshi_0448 at 437.323 kb on - strand, within Dshi_0448 at 437.325 kb on + strand, within Dshi_0448 at 437.329 kb on - strand, within Dshi_0448 at 437.389 kb on + strand, within Dshi_0448 at 437.410 kb on + strand, within Dshi_0448 at 437.410 kb on + strand, within Dshi_0448 at 437.432 kb on + strand, within Dshi_0448 at 437.537 kb on - strand at 437.542 kb on - strand at 437.612 kb on + strand at 437.617 kb on + strand at 437.648 kb on + strand at 437.650 kb on + strand at 437.735 kb on - strand at 437.735 kb on - strand at 437.772 kb on + strand at 437.909 kb on - strand, within Dshi_0449 at 437.995 kb on - strand, within Dshi_0449 at 438.112 kb on - strand, within Dshi_0449 at 438.125 kb on + strand, within Dshi_0449 at 438.151 kb on - strand, within Dshi_0449 at 438.152 kb on - strand, within Dshi_0449 at 438.179 kb on - strand, within Dshi_0449 at 438.181 kb on + strand, within Dshi_0449 at 438.189 kb on - strand, within Dshi_0449 at 438.272 kb on + strand, within Dshi_0449 at 438.280 kb on - strand, within Dshi_0449 at 438.298 kb on - strand, within Dshi_0449 at 438.309 kb on + strand, within Dshi_0449 at 438.322 kb on - strand, within Dshi_0449 at 438.373 kb on + strand at 438.378 kb on + strand at 438.386 kb on - strand at 438.420 kb on + strand at 438.420 kb on - strand at 438.428 kb on - strand at 438.428 kb on - strand at 438.430 kb on + strand at 438.430 kb on + strand at 438.430 kb on + strand at 438.462 kb on + strand at 438.471 kb on - strand at 438.486 kb on + strand at 438.490 kb on + strand at 438.525 kb on - strand at 438.553 kb on - strand, within Dshi_0450 at 438.553 kb on - strand at 438.561 kb on - strand, within Dshi_0450 at 438.591 kb on + strand, within Dshi_0450 at 438.599 kb on + strand, within Dshi_0450 at 438.606 kb on - strand, within Dshi_0450 at 438.608 kb on + strand, within Dshi_0450 at 438.616 kb on - strand, within Dshi_0450 at 438.616 kb on - strand, within Dshi_0450 at 438.625 kb on + strand, within Dshi_0450 at 438.625 kb on + strand, within Dshi_0450 at 438.625 kb on + strand, within Dshi_0450 at 438.625 kb on + strand, within Dshi_0450 at 438.625 kb on + strand, within Dshi_0450 at 438.630 kb on + strand at 438.633 kb on - strand at 438.633 kb on - strand at 438.633 kb on - strand at 438.651 kb on + strand at 438.659 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 435,139 - Dshi_0447 0.20 -0.3 435,251 + Dshi_0447 0.34 -0.9 435,259 - Dshi_0447 0.35 +2.7 435,278 + Dshi_0447 0.38 -1.0 435,301 + Dshi_0447 0.41 -0.2 435,301 + Dshi_0447 0.41 +0.1 435,301 + Dshi_0447 0.41 -0.4 435,309 - Dshi_0447 0.42 +0.3 435,309 - Dshi_0447 0.42 -0.1 435,424 + Dshi_0447 0.56 -0.4 435,427 - Dshi_0447 0.57 -0.5 435,427 - Dshi_0447 0.57 -0.1 435,427 - Dshi_0447 0.57 +1.7 435,462 + Dshi_0447 0.61 +0.7 435,462 + Dshi_0447 0.61 +0.9 435,462 + Dshi_0447 0.61 -0.3 435,470 - Dshi_0447 0.62 +0.3 435,549 + Dshi_0447 0.72 -1.0 435,587 - Dshi_0447 0.77 +0.5 435,600 + Dshi_0447 0.78 +0.1 435,601 - Dshi_0447 0.79 +1.3 435,653 - Dshi_0447 0.85 -2.0 435,653 - Dshi_0447 0.85 +1.3 435,718 - +0.0 435,758 - -0.2 435,789 + +0.2 435,789 + +0.1 435,789 + -0.1 435,789 + +0.5 435,791 + +0.3 435,797 - -0.2 435,797 - -0.5 435,840 + -0.3 435,840 + -0.1 435,841 + -0.9 435,848 - +0.1 435,867 - +0.4 435,880 + -0.4 435,884 - -0.0 435,885 + -0.9 435,891 + +0.2 435,893 - +1.7 435,899 - -0.3 435,933 + +0.7 435,933 + +0.2 435,935 + +0.2 435,941 - -0.1 435,941 - -0.9 435,941 - -0.2 435,941 - +0.4 435,943 - +0.3 435,948 + -0.0 435,956 - -0.4 435,956 - -0.5 435,956 - -0.3 435,985 + +0.7 436,019 + -1.0 436,025 - -0.1 436,027 - +0.4 436,073 + +0.4 436,076 - -0.1 436,076 - +1.1 436,078 + -0.1 436,106 + -0.4 436,109 + -0.5 436,141 + +0.1 436,151 + -1.0 436,167 + -1.4 436,212 - +0.1 436,220 + +1.8 436,228 - -0.4 436,243 + -0.2 436,251 - Dshi_0448 0.10 -0.6 436,258 + Dshi_0448 0.11 -0.5 436,301 + Dshi_0448 0.13 +0.8 436,311 + Dshi_0448 0.14 -0.4 436,311 + Dshi_0448 0.14 +0.1 436,320 + Dshi_0448 0.15 +0.3 436,320 + Dshi_0448 0.15 -1.4 436,391 + Dshi_0448 0.19 +0.1 436,401 + Dshi_0448 0.20 -1.2 436,401 + Dshi_0448 0.20 +1.1 436,401 + Dshi_0448 0.20 -0.9 436,401 + Dshi_0448 0.20 -0.5 436,498 + Dshi_0448 0.26 -1.2 436,543 + Dshi_0448 0.28 +0.3 436,550 + Dshi_0448 0.29 -1.0 436,563 + Dshi_0448 0.30 -0.7 436,582 + Dshi_0448 0.31 -0.3 436,615 - Dshi_0448 0.33 -1.4 436,620 - Dshi_0448 0.33 -0.2 436,620 - Dshi_0448 0.33 -0.1 436,622 + Dshi_0448 0.33 -0.9 436,632 + Dshi_0448 0.34 -0.2 436,649 + Dshi_0448 0.35 -0.3 436,676 - Dshi_0448 0.37 -0.2 436,678 + -0.2 436,688 + Dshi_0448 0.37 +0.2 436,690 + Dshi_0448 0.37 -0.3 436,690 + Dshi_0448 0.37 -1.0 436,697 - Dshi_0448 0.38 -0.1 436,700 + Dshi_0448 0.38 -0.9 436,707 + Dshi_0448 0.39 -0.1 436,707 + Dshi_0448 0.39 -0.9 436,708 - Dshi_0448 0.39 -0.0 436,708 - Dshi_0448 0.39 -0.4 436,715 - Dshi_0448 0.39 -1.0 436,749 + Dshi_0448 0.41 +0.3 436,751 + Dshi_0448 0.41 -0.3 436,751 + Dshi_0448 0.41 -1.0 436,767 + Dshi_0448 0.42 -0.2 436,850 + Dshi_0448 0.47 -0.3 436,857 + Dshi_0448 0.48 +0.3 436,884 + Dshi_0448 0.50 -1.4 436,893 + Dshi_0448 0.50 -0.2 436,898 + Dshi_0448 0.50 -0.5 436,957 - Dshi_0448 0.54 -0.0 436,978 + Dshi_0448 0.55 -0.6 437,024 + Dshi_0448 0.58 -0.2 437,027 - Dshi_0448 0.58 +0.0 437,043 + Dshi_0448 0.59 -0.5 437,052 + Dshi_0448 0.60 +0.3 437,075 - Dshi_0448 0.61 +0.0 437,106 - Dshi_0448 0.63 -0.3 437,170 - Dshi_0448 0.67 -0.3 437,170 - Dshi_0448 0.67 -0.7 437,176 + Dshi_0448 0.68 -0.0 437,177 + Dshi_0448 0.68 -0.5 437,184 - Dshi_0448 0.68 +0.1 437,196 + Dshi_0448 0.69 -1.2 437,201 + Dshi_0448 0.69 -0.3 437,209 - Dshi_0448 0.70 -0.4 437,209 - Dshi_0448 0.70 -0.1 437,224 - Dshi_0448 0.71 -0.4 437,227 + Dshi_0448 0.71 +0.7 437,235 - Dshi_0448 0.71 -0.8 437,235 - Dshi_0448 0.71 -0.2 437,235 - Dshi_0448 0.71 +0.7 437,253 + Dshi_0448 0.72 -0.1 437,260 - Dshi_0448 0.73 -0.2 437,262 + Dshi_0448 0.73 +0.3 437,315 + Dshi_0448 0.76 +0.1 437,318 - Dshi_0448 0.76 -0.7 437,323 - Dshi_0448 0.77 -0.2 437,323 - Dshi_0448 0.77 -0.1 437,323 - Dshi_0448 0.77 +0.2 437,325 + Dshi_0448 0.77 +0.1 437,329 - Dshi_0448 0.77 +1.1 437,389 + Dshi_0448 0.81 -0.4 437,410 + Dshi_0448 0.82 -1.4 437,410 + Dshi_0448 0.82 -1.2 437,432 + Dshi_0448 0.84 -0.6 437,537 - +0.1 437,542 - -1.0 437,612 + +0.3 437,617 + -1.3 437,648 + -0.4 437,650 + +0.6 437,735 - +0.4 437,735 - +0.4 437,772 + +0.3 437,909 - Dshi_0449 0.23 +0.1 437,995 - Dshi_0449 0.36 -0.4 438,112 - Dshi_0449 0.53 +0.4 438,125 + Dshi_0449 0.55 -0.2 438,151 - Dshi_0449 0.58 -2.6 438,152 - Dshi_0449 0.59 -1.3 438,179 - Dshi_0449 0.63 -0.4 438,181 + Dshi_0449 0.63 +0.0 438,189 - Dshi_0449 0.64 -1.7 438,272 + Dshi_0449 0.76 +0.2 438,280 - Dshi_0449 0.77 -0.9 438,298 - Dshi_0449 0.80 -0.9 438,309 + Dshi_0449 0.82 -1.2 438,322 - Dshi_0449 0.83 -2.0 438,373 + +0.7 438,378 + +0.1 438,386 - -1.9 438,420 + +1.6 438,420 - -1.7 438,428 - -0.6 438,428 - -1.7 438,430 + -0.2 438,430 + -0.4 438,430 + -0.6 438,462 + -0.3 438,471 - +0.3 438,486 + -0.4 438,490 + -0.2 438,525 - -0.1 438,553 - Dshi_0450 0.15 -2.0 438,553 - +0.1 438,561 - Dshi_0450 0.23 +0.7 438,591 + Dshi_0450 0.54 -1.6 438,599 + Dshi_0450 0.62 -0.9 438,606 - Dshi_0450 0.69 -0.1 438,608 + Dshi_0450 0.71 +0.3 438,616 - Dshi_0450 0.79 -0.5 438,616 - Dshi_0450 0.79 +0.3 438,625 + Dshi_0450 0.88 +0.6 438,625 + Dshi_0450 0.88 -0.1 438,625 + Dshi_0450 0.88 +0.4 438,625 + Dshi_0450 0.88 -0.7 438,625 + Dshi_0450 0.88 -0.2 438,630 + +0.2 438,633 - -0.1 438,633 - -0.2 438,633 - -0.5 438,651 + +0.2 438,659 - -0.7
Or see this region's nucleotide sequence