Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0233

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0232 and Dshi_0233 are separated by 155 nucleotidesDshi_0233 and Dshi_0234 are separated by 72 nucleotides Dshi_0232: Dshi_0232 - hypothetical protein (RefSeq), at 228,403 to 229,473 _0232 Dshi_0233: Dshi_0233 - Citrate transporter (RefSeq), at 229,629 to 231,512 _0233 Dshi_0234: Dshi_0234 - hypothetical protein (RefSeq), at 231,585 to 232,649 _0234 Position (kb) 229 230 231 232Strain fitness (log2 ratio) -2 -1 0 1at 228.686 kb on + strand, within Dshi_0232at 228.710 kb on + strand, within Dshi_0232at 228.726 kb on - strand, within Dshi_0232at 228.735 kb on + strand, within Dshi_0232at 228.869 kb on + strand, within Dshi_0232at 228.919 kb on - strand, within Dshi_0232at 228.938 kb on - strand, within Dshi_0232at 228.992 kb on - strand, within Dshi_0232at 229.025 kb on - strand, within Dshi_0232at 229.063 kb on + strand, within Dshi_0232at 229.197 kb on - strand, within Dshi_0232at 229.277 kb on - strand, within Dshi_0232at 229.307 kb on + strand, within Dshi_0232at 229.523 kb on + strandat 229.615 kb on + strandat 229.615 kb on + strandat 229.615 kb on + strandat 229.623 kb on - strandat 229.623 kb on - strandat 229.623 kb on - strandat 229.634 kb on - strandat 229.777 kb on - strandat 229.798 kb on - strandat 229.822 kb on + strand, within Dshi_0233at 229.822 kb on + strand, within Dshi_0233at 229.822 kb on + strand, within Dshi_0233at 229.884 kb on + strand, within Dshi_0233at 230.015 kb on + strand, within Dshi_0233at 230.079 kb on + strand, within Dshi_0233at 230.136 kb on - strand, within Dshi_0233at 230.258 kb on + strand, within Dshi_0233at 230.291 kb on + strand, within Dshi_0233at 230.292 kb on - strand, within Dshi_0233at 230.428 kb on - strand, within Dshi_0233at 230.428 kb on - strand, within Dshi_0233at 230.428 kb on - strand, within Dshi_0233at 230.475 kb on - strand, within Dshi_0233at 230.601 kb on - strand, within Dshi_0233at 230.629 kb on - strand, within Dshi_0233at 230.639 kb on + strand, within Dshi_0233at 230.679 kb on - strand, within Dshi_0233at 230.791 kb on - strand, within Dshi_0233at 230.806 kb on + strand, within Dshi_0233at 230.849 kb on - strand, within Dshi_0233at 231.047 kb on - strand, within Dshi_0233at 231.096 kb on - strand, within Dshi_0233at 231.112 kb on + strand, within Dshi_0233at 231.183 kb on - strand, within Dshi_0233at 231.387 kb on + strandat 231.400 kb on - strandat 231.467 kb on + strandat 231.475 kb on - strandat 231.488 kb on - strandat 231.499 kb on + strandat 231.543 kb on + strandat 231.545 kb on - strandat 231.551 kb on - strandat 231.582 kb on + strandat 231.588 kb on + strandat 231.617 kb on + strandat 231.669 kb on - strandat 231.900 kb on + strand, within Dshi_0234at 231.935 kb on + strand, within Dshi_0234at 232.026 kb on - strand, within Dshi_0234at 232.044 kb on - strand, within Dshi_0234

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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228,686 + Dshi_0232 0.26 -0.4
228,710 + Dshi_0232 0.29 -0.5
228,726 - Dshi_0232 0.30 -0.1
228,735 + Dshi_0232 0.31 +0.3
228,869 + Dshi_0232 0.44 +1.3
228,919 - Dshi_0232 0.48 +0.5
228,938 - Dshi_0232 0.50 -0.2
228,992 - Dshi_0232 0.55 -1.4
229,025 - Dshi_0232 0.58 -0.8
229,063 + Dshi_0232 0.62 -0.3
229,197 - Dshi_0232 0.74 -0.0
229,277 - Dshi_0232 0.82 -0.4
229,307 + Dshi_0232 0.84 +0.1
229,523 + -0.3
229,615 + +0.4
229,615 + -0.1
229,615 + -0.3
229,623 - -0.4
229,623 - -0.2
229,623 - -0.6
229,634 - -2.7
229,777 - -0.1
229,798 - -0.1
229,822 + Dshi_0233 0.10 +0.2
229,822 + Dshi_0233 0.10 -0.2
229,822 + Dshi_0233 0.10 -0.4
229,884 + Dshi_0233 0.14 +0.0
230,015 + Dshi_0233 0.20 -0.8
230,079 + Dshi_0233 0.24 +0.4
230,136 - Dshi_0233 0.27 +0.3
230,258 + Dshi_0233 0.33 -0.2
230,291 + Dshi_0233 0.35 -0.6
230,292 - Dshi_0233 0.35 -0.8
230,428 - Dshi_0233 0.42 -0.3
230,428 - Dshi_0233 0.42 -0.7
230,428 - Dshi_0233 0.42 -0.3
230,475 - Dshi_0233 0.45 -0.4
230,601 - Dshi_0233 0.52 -0.1
230,629 - Dshi_0233 0.53 +0.9
230,639 + Dshi_0233 0.54 -0.5
230,679 - Dshi_0233 0.56 -1.4
230,791 - Dshi_0233 0.62 -0.4
230,806 + Dshi_0233 0.62 +0.7
230,849 - Dshi_0233 0.65 -1.7
231,047 - Dshi_0233 0.75 -0.1
231,096 - Dshi_0233 0.78 +0.4
231,112 + Dshi_0233 0.79 -0.7
231,183 - Dshi_0233 0.82 -0.7
231,387 + +0.5
231,400 - -1.2
231,467 + +0.6
231,475 - +0.1
231,488 - -1.3
231,499 + -0.2
231,543 + -0.6
231,545 - +0.0
231,551 - -0.9
231,582 + +0.1
231,588 + +0.1
231,617 + -0.3
231,669 - +1.1
231,900 + Dshi_0234 0.30 -0.6
231,935 + Dshi_0234 0.33 -0.9
232,026 - Dshi_0234 0.41 +0.3
232,044 - Dshi_0234 0.43 -0.4

Or see this region's nucleotide sequence