Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0232

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0230 and Dshi_0231 are separated by 12 nucleotidesDshi_0231 and Dshi_0232 are separated by 257 nucleotidesDshi_0232 and Dshi_0233 are separated by 155 nucleotides Dshi_0230: Dshi_0230 - ribosomal protein L35 (RefSeq), at 227,567 to 227,767 _0230 Dshi_0231: Dshi_0231 - ribosomal protein L20 (RefSeq), at 227,780 to 228,145 _0231 Dshi_0232: Dshi_0232 - hypothetical protein (RefSeq), at 228,403 to 229,473 _0232 Dshi_0233: Dshi_0233 - Citrate transporter (RefSeq), at 229,629 to 231,512 _0233 Position (kb) 228 229 230Strain fitness (log2 ratio) -2 -1 0 1 2at 227.467 kb on - strandat 228.121 kb on + strandat 228.124 kb on - strandat 228.129 kb on - strandat 228.129 kb on - strandat 228.177 kb on + strandat 228.177 kb on + strandat 228.185 kb on - strandat 228.209 kb on - strandat 228.229 kb on - strandat 228.241 kb on - strandat 228.251 kb on + strandat 228.286 kb on + strandat 228.294 kb on - strandat 228.294 kb on - strandat 228.298 kb on + strandat 228.369 kb on + strandat 228.376 kb on - strandat 228.377 kb on - strandat 228.378 kb on + strandat 228.386 kb on - strandat 228.391 kb on - strandat 228.400 kb on + strandat 228.400 kb on + strandat 228.408 kb on - strandat 228.431 kb on - strandat 228.436 kb on - strandat 228.444 kb on - strandat 228.457 kb on - strandat 228.458 kb on + strandat 228.466 kb on - strandat 228.479 kb on + strandat 228.522 kb on + strand, within Dshi_0232at 228.528 kb on + strand, within Dshi_0232at 228.540 kb on + strand, within Dshi_0232at 228.574 kb on - strand, within Dshi_0232at 228.610 kb on - strand, within Dshi_0232at 228.686 kb on + strand, within Dshi_0232at 228.710 kb on + strand, within Dshi_0232at 228.726 kb on - strand, within Dshi_0232at 228.735 kb on + strand, within Dshi_0232at 228.869 kb on + strand, within Dshi_0232at 228.919 kb on - strand, within Dshi_0232at 228.938 kb on - strand, within Dshi_0232at 228.992 kb on - strand, within Dshi_0232at 229.025 kb on - strand, within Dshi_0232at 229.063 kb on + strand, within Dshi_0232at 229.197 kb on - strand, within Dshi_0232at 229.277 kb on - strand, within Dshi_0232at 229.307 kb on + strand, within Dshi_0232at 229.523 kb on + strandat 229.615 kb on + strandat 229.615 kb on + strandat 229.615 kb on + strandat 229.623 kb on - strandat 229.623 kb on - strandat 229.623 kb on - strandat 229.634 kb on - strandat 229.777 kb on - strandat 229.798 kb on - strandat 229.822 kb on + strand, within Dshi_0233at 229.822 kb on + strand, within Dshi_0233at 229.822 kb on + strand, within Dshi_0233at 229.884 kb on + strand, within Dshi_0233at 230.015 kb on + strand, within Dshi_0233at 230.079 kb on + strand, within Dshi_0233at 230.136 kb on - strand, within Dshi_0233at 230.258 kb on + strand, within Dshi_0233at 230.291 kb on + strand, within Dshi_0233at 230.292 kb on - strand, within Dshi_0233at 230.428 kb on - strand, within Dshi_0233at 230.428 kb on - strand, within Dshi_0233at 230.428 kb on - strand, within Dshi_0233

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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227,467 - -0.1
228,121 + -0.1
228,124 - +0.0
228,129 - +1.0
228,129 - -1.2
228,177 + +0.1
228,177 + -1.4
228,185 - -0.9
228,209 - -0.6
228,229 - +1.7
228,241 - +0.1
228,251 + +0.1
228,286 + +1.8
228,294 - -1.4
228,294 - -1.4
228,298 + +0.7
228,369 + +0.6
228,376 - -0.6
228,377 - +0.2
228,378 + +0.1
228,386 - -0.9
228,391 - -0.3
228,400 + -0.7
228,400 + +0.3
228,408 - -0.1
228,431 - +2.0
228,436 - +0.7
228,444 - +0.7
228,457 - -0.1
228,458 + -0.4
228,466 - -1.0
228,479 + -1.1
228,522 + Dshi_0232 0.11 +0.0
228,528 + Dshi_0232 0.12 +1.5
228,540 + Dshi_0232 0.13 +0.4
228,574 - Dshi_0232 0.16 +0.7
228,610 - Dshi_0232 0.19 +1.3
228,686 + Dshi_0232 0.26 -0.4
228,710 + Dshi_0232 0.29 -0.5
228,726 - Dshi_0232 0.30 -0.1
228,735 + Dshi_0232 0.31 +0.3
228,869 + Dshi_0232 0.44 +1.3
228,919 - Dshi_0232 0.48 +0.5
228,938 - Dshi_0232 0.50 -0.2
228,992 - Dshi_0232 0.55 -1.4
229,025 - Dshi_0232 0.58 -0.8
229,063 + Dshi_0232 0.62 -0.3
229,197 - Dshi_0232 0.74 -0.0
229,277 - Dshi_0232 0.82 -0.4
229,307 + Dshi_0232 0.84 +0.1
229,523 + -0.3
229,615 + +0.4
229,615 + -0.1
229,615 + -0.3
229,623 - -0.4
229,623 - -0.2
229,623 - -0.6
229,634 - -2.7
229,777 - -0.1
229,798 - -0.1
229,822 + Dshi_0233 0.10 +0.2
229,822 + Dshi_0233 0.10 -0.2
229,822 + Dshi_0233 0.10 -0.4
229,884 + Dshi_0233 0.14 +0.0
230,015 + Dshi_0233 0.20 -0.8
230,079 + Dshi_0233 0.24 +0.4
230,136 - Dshi_0233 0.27 +0.3
230,258 + Dshi_0233 0.33 -0.2
230,291 + Dshi_0233 0.35 -0.6
230,292 - Dshi_0233 0.35 -0.8
230,428 - Dshi_0233 0.42 -0.3
230,428 - Dshi_0233 0.42 -0.7
230,428 - Dshi_0233 0.42 -0.3

Or see this region's nucleotide sequence