Experiment: thiosulfate 0.25 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5161 and Pf6N2E2_5162 overlap by 1 nucleotides Pf6N2E2_5162 and Pf6N2E2_5163 overlap by 45 nucleotides Pf6N2E2_5163 and Pf6N2E2_5164 are separated by 191 nucleotides
Pf6N2E2_5161 - Valine--pyruvate aminotransferase (EC 2.6.1.66) ## AvtA, at 5,950,286 to 5,951,458
_5161
Pf6N2E2_5162 - Sugar/maltose fermentation stimulation protein homolog, at 5,951,458 to 5,952,204
_5162
Pf6N2E2_5163 - Iron-sulfur cluster-binding protein, Rieske family, at 5,952,160 to 5,952,477
_5163
Pf6N2E2_5164 - Periplasmic hemin-binding protein, at 5,952,669 to 5,953,547
_5164
Position (kb) 5952
5953 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5951.188 kb on - strand, within Pf6N2E2_5161 at 5951.246 kb on + strand, within Pf6N2E2_5161 at 5951.246 kb on + strand, within Pf6N2E2_5161 at 5951.246 kb on + strand, within Pf6N2E2_5161 at 5951.247 kb on - strand, within Pf6N2E2_5161 at 5951.247 kb on - strand, within Pf6N2E2_5161 at 5951.252 kb on + strand, within Pf6N2E2_5161 at 5951.252 kb on + strand, within Pf6N2E2_5161 at 5951.252 kb on + strand, within Pf6N2E2_5161 at 5951.252 kb on + strand, within Pf6N2E2_5161 at 5951.253 kb on - strand, within Pf6N2E2_5161 at 5951.253 kb on - strand, within Pf6N2E2_5161 at 5951.384 kb on + strand at 5951.439 kb on + strand at 5951.503 kb on + strand at 5951.553 kb on + strand, within Pf6N2E2_5162 at 5951.553 kb on + strand, within Pf6N2E2_5162 at 5951.553 kb on + strand, within Pf6N2E2_5162 at 5951.565 kb on + strand, within Pf6N2E2_5162 at 5951.565 kb on + strand, within Pf6N2E2_5162 at 5951.794 kb on + strand, within Pf6N2E2_5162 at 5951.833 kb on + strand, within Pf6N2E2_5162 at 5951.834 kb on - strand, within Pf6N2E2_5162 at 5951.992 kb on + strand, within Pf6N2E2_5162 at 5951.992 kb on + strand, within Pf6N2E2_5162 at 5951.992 kb on + strand, within Pf6N2E2_5162 at 5951.992 kb on + strand, within Pf6N2E2_5162 at 5951.992 kb on + strand, within Pf6N2E2_5162 at 5951.992 kb on + strand, within Pf6N2E2_5162 at 5951.992 kb on + strand, within Pf6N2E2_5162 at 5951.992 kb on + strand, within Pf6N2E2_5162 at 5951.993 kb on - strand, within Pf6N2E2_5162 at 5951.993 kb on - strand, within Pf6N2E2_5162 at 5951.993 kb on - strand, within Pf6N2E2_5162 at 5951.993 kb on - strand, within Pf6N2E2_5162 at 5951.993 kb on - strand, within Pf6N2E2_5162 at 5952.050 kb on + strand, within Pf6N2E2_5162 at 5952.051 kb on - strand, within Pf6N2E2_5162 at 5952.052 kb on + strand, within Pf6N2E2_5162 at 5952.053 kb on - strand, within Pf6N2E2_5162 at 5952.053 kb on - strand, within Pf6N2E2_5162 at 5952.053 kb on - strand, within Pf6N2E2_5162 at 5952.053 kb on - strand, within Pf6N2E2_5162 at 5952.103 kb on + strand, within Pf6N2E2_5162 at 5952.161 kb on + strand at 5952.161 kb on + strand at 5952.256 kb on + strand, within Pf6N2E2_5163 at 5952.256 kb on + strand, within Pf6N2E2_5163 at 5952.256 kb on + strand, within Pf6N2E2_5163 at 5952.368 kb on + strand, within Pf6N2E2_5163 at 5952.368 kb on + strand, within Pf6N2E2_5163 at 5952.368 kb on + strand, within Pf6N2E2_5163 at 5952.374 kb on + strand, within Pf6N2E2_5163 at 5952.374 kb on + strand, within Pf6N2E2_5163 at 5952.374 kb on + strand, within Pf6N2E2_5163 at 5952.374 kb on + strand, within Pf6N2E2_5163 at 5952.374 kb on + strand, within Pf6N2E2_5163 at 5952.374 kb on + strand, within Pf6N2E2_5163 at 5952.374 kb on + strand, within Pf6N2E2_5163 at 5952.374 kb on + strand, within Pf6N2E2_5163 at 5952.374 kb on + strand, within Pf6N2E2_5163 at 5952.374 kb on + strand, within Pf6N2E2_5163 at 5952.375 kb on - strand, within Pf6N2E2_5163 at 5952.375 kb on - strand, within Pf6N2E2_5163 at 5952.375 kb on - strand, within Pf6N2E2_5163 at 5952.375 kb on - strand, within Pf6N2E2_5163 at 5952.375 kb on - strand, within Pf6N2E2_5163 at 5952.375 kb on - strand, within Pf6N2E2_5163 at 5952.375 kb on - strand, within Pf6N2E2_5163 at 5952.375 kb on - strand, within Pf6N2E2_5163 at 5952.375 kb on - strand, within Pf6N2E2_5163 at 5952.375 kb on - strand, within Pf6N2E2_5163 at 5952.375 kb on - strand, within Pf6N2E2_5163 at 5952.375 kb on - strand, within Pf6N2E2_5163 at 5952.375 kb on - strand, within Pf6N2E2_5163 at 5952.487 kb on + strand at 5952.487 kb on + strand at 5952.487 kb on + strand at 5952.487 kb on + strand at 5952.487 kb on + strand at 5952.487 kb on + strand at 5952.487 kb on + strand at 5952.487 kb on + strand at 5952.487 kb on + strand at 5952.487 kb on + strand at 5952.487 kb on + strand at 5952.487 kb on + strand at 5952.487 kb on + strand at 5952.487 kb on + strand at 5952.487 kb on + strand at 5952.487 kb on + strand at 5952.487 kb on + strand at 5952.487 kb on + strand at 5952.487 kb on + strand at 5952.487 kb on + strand at 5952.487 kb on + strand at 5952.487 kb on + strand at 5952.488 kb on - strand at 5952.488 kb on - strand at 5952.488 kb on - strand at 5952.488 kb on - strand at 5952.488 kb on - strand at 5952.488 kb on - strand at 5952.488 kb on - strand at 5952.489 kb on + strand at 5952.489 kb on + strand at 5952.489 kb on + strand at 5952.489 kb on + strand at 5952.489 kb on + strand at 5952.489 kb on + strand at 5952.489 kb on + strand at 5952.489 kb on + strand at 5952.489 kb on + strand at 5952.490 kb on - strand at 5952.490 kb on - strand at 5952.490 kb on - strand at 5952.490 kb on - strand at 5952.490 kb on - strand at 5952.490 kb on - strand at 5952.490 kb on - strand at 5952.490 kb on - strand at 5952.490 kb on - strand at 5952.547 kb on - strand at 5952.620 kb on + strand at 5952.621 kb on - strand at 5953.171 kb on + strand, within Pf6N2E2_5164 at 5953.171 kb on + strand, within Pf6N2E2_5164 at 5953.171 kb on + strand, within Pf6N2E2_5164 at 5953.171 kb on + strand, within Pf6N2E2_5164 at 5953.172 kb on - strand, within Pf6N2E2_5164 at 5953.172 kb on - strand, within Pf6N2E2_5164 at 5953.243 kb on + strand, within Pf6N2E2_5164 at 5953.262 kb on + strand, within Pf6N2E2_5164 at 5953.262 kb on + strand, within Pf6N2E2_5164 at 5953.262 kb on + strand, within Pf6N2E2_5164 at 5953.263 kb on - strand, within Pf6N2E2_5164 at 5953.263 kb on - strand, within Pf6N2E2_5164 at 5953.263 kb on - strand, within Pf6N2E2_5164 at 5953.284 kb on + strand, within Pf6N2E2_5164 at 5953.284 kb on + strand, within Pf6N2E2_5164 at 5953.285 kb on - strand, within Pf6N2E2_5164 at 5953.285 kb on - strand, within Pf6N2E2_5164
Per-strain Table
Position Strand Gene LocusTag Fraction thiosulfate 0.25 M remove 5,951,188 - Pf6N2E2_5161 0.77 +0.1 5,951,246 + Pf6N2E2_5161 0.82 -1.1 5,951,246 + Pf6N2E2_5161 0.82 -0.5 5,951,246 + Pf6N2E2_5161 0.82 -2.2 5,951,247 - Pf6N2E2_5161 0.82 -1.3 5,951,247 - Pf6N2E2_5161 0.82 -0.3 5,951,252 + Pf6N2E2_5161 0.82 +0.9 5,951,252 + Pf6N2E2_5161 0.82 +0.8 5,951,252 + Pf6N2E2_5161 0.82 -0.3 5,951,252 + Pf6N2E2_5161 0.82 +0.0 5,951,253 - Pf6N2E2_5161 0.82 +0.3 5,951,253 - Pf6N2E2_5161 0.82 +0.1 5,951,384 + +0.8 5,951,439 + -0.0 5,951,503 + -0.8 5,951,553 + Pf6N2E2_5162 0.13 +0.6 5,951,553 + Pf6N2E2_5162 0.13 -0.3 5,951,553 + Pf6N2E2_5162 0.13 -1.1 5,951,565 + Pf6N2E2_5162 0.14 -0.0 5,951,565 + Pf6N2E2_5162 0.14 +0.2 5,951,794 + Pf6N2E2_5162 0.45 -0.5 5,951,833 + Pf6N2E2_5162 0.50 +1.0 5,951,834 - Pf6N2E2_5162 0.50 -1.0 5,951,992 + Pf6N2E2_5162 0.71 -0.6 5,951,992 + Pf6N2E2_5162 0.71 -0.5 5,951,992 + Pf6N2E2_5162 0.71 +1.0 5,951,992 + Pf6N2E2_5162 0.71 -0.8 5,951,992 + Pf6N2E2_5162 0.71 -0.1 5,951,992 + Pf6N2E2_5162 0.71 +0.7 5,951,992 + Pf6N2E2_5162 0.71 +0.6 5,951,992 + Pf6N2E2_5162 0.71 -0.1 5,951,993 - Pf6N2E2_5162 0.72 -0.6 5,951,993 - Pf6N2E2_5162 0.72 -0.0 5,951,993 - Pf6N2E2_5162 0.72 -0.8 5,951,993 - Pf6N2E2_5162 0.72 -0.5 5,951,993 - Pf6N2E2_5162 0.72 +0.3 5,952,050 + Pf6N2E2_5162 0.79 +0.7 5,952,051 - Pf6N2E2_5162 0.79 -0.0 5,952,052 + Pf6N2E2_5162 0.80 +0.6 5,952,053 - Pf6N2E2_5162 0.80 +0.6 5,952,053 - Pf6N2E2_5162 0.80 +0.5 5,952,053 - Pf6N2E2_5162 0.80 +2.0 5,952,053 - Pf6N2E2_5162 0.80 -1.1 5,952,103 + Pf6N2E2_5162 0.86 +0.2 5,952,161 + -0.3 5,952,161 + +0.1 5,952,256 + Pf6N2E2_5163 0.30 -0.8 5,952,256 + Pf6N2E2_5163 0.30 +0.5 5,952,256 + Pf6N2E2_5163 0.30 -0.3 5,952,368 + Pf6N2E2_5163 0.65 +0.7 5,952,368 + Pf6N2E2_5163 0.65 +0.9 5,952,368 + Pf6N2E2_5163 0.65 +0.3 5,952,374 + Pf6N2E2_5163 0.67 +0.1 5,952,374 + Pf6N2E2_5163 0.67 -0.4 5,952,374 + Pf6N2E2_5163 0.67 -1.8 5,952,374 + Pf6N2E2_5163 0.67 +0.0 5,952,374 + Pf6N2E2_5163 0.67 -1.3 5,952,374 + Pf6N2E2_5163 0.67 +0.3 5,952,374 + Pf6N2E2_5163 0.67 -1.1 5,952,374 + Pf6N2E2_5163 0.67 -0.2 5,952,374 + Pf6N2E2_5163 0.67 -0.2 5,952,374 + Pf6N2E2_5163 0.67 +0.1 5,952,375 - Pf6N2E2_5163 0.68 +0.7 5,952,375 - Pf6N2E2_5163 0.68 -0.2 5,952,375 - Pf6N2E2_5163 0.68 -0.5 5,952,375 - Pf6N2E2_5163 0.68 -0.7 5,952,375 - Pf6N2E2_5163 0.68 +0.9 5,952,375 - Pf6N2E2_5163 0.68 -2.7 5,952,375 - Pf6N2E2_5163 0.68 -1.1 5,952,375 - Pf6N2E2_5163 0.68 -0.3 5,952,375 - Pf6N2E2_5163 0.68 -0.4 5,952,375 - Pf6N2E2_5163 0.68 -0.4 5,952,375 - Pf6N2E2_5163 0.68 +1.0 5,952,375 - Pf6N2E2_5163 0.68 +0.1 5,952,375 - Pf6N2E2_5163 0.68 +1.3 5,952,487 + -0.6 5,952,487 + -0.2 5,952,487 + -0.2 5,952,487 + +0.9 5,952,487 + +0.8 5,952,487 + +0.7 5,952,487 + +0.1 5,952,487 + -0.2 5,952,487 + +0.8 5,952,487 + -1.5 5,952,487 + -0.8 5,952,487 + +0.2 5,952,487 + -0.1 5,952,487 + +0.2 5,952,487 + -0.6 5,952,487 + -0.1 5,952,487 + +0.4 5,952,487 + -1.0 5,952,487 + +0.0 5,952,487 + -0.2 5,952,487 + +1.3 5,952,487 + -1.5 5,952,488 - +0.9 5,952,488 - +0.3 5,952,488 - +1.3 5,952,488 - -0.1 5,952,488 - +0.5 5,952,488 - +0.5 5,952,488 - +0.1 5,952,489 + -1.9 5,952,489 + +0.9 5,952,489 + +1.7 5,952,489 + +0.3 5,952,489 + +0.5 5,952,489 + -1.5 5,952,489 + +0.1 5,952,489 + -0.4 5,952,489 + -1.4 5,952,490 - -0.8 5,952,490 - -0.1 5,952,490 - +0.5 5,952,490 - +0.5 5,952,490 - -1.3 5,952,490 - +1.3 5,952,490 - +0.8 5,952,490 - -0.3 5,952,490 - -0.1 5,952,547 - -1.5 5,952,620 + +1.0 5,952,621 - +0.3 5,953,171 + Pf6N2E2_5164 0.57 -0.9 5,953,171 + Pf6N2E2_5164 0.57 -0.1 5,953,171 + Pf6N2E2_5164 0.57 +0.2 5,953,171 + Pf6N2E2_5164 0.57 +0.4 5,953,172 - Pf6N2E2_5164 0.57 -1.1 5,953,172 - Pf6N2E2_5164 0.57 -0.1 5,953,243 + Pf6N2E2_5164 0.65 +1.0 5,953,262 + Pf6N2E2_5164 0.67 -0.5 5,953,262 + Pf6N2E2_5164 0.67 +0.1 5,953,262 + Pf6N2E2_5164 0.67 -0.6 5,953,263 - Pf6N2E2_5164 0.68 +0.8 5,953,263 - Pf6N2E2_5164 0.68 +0.4 5,953,263 - Pf6N2E2_5164 0.68 -1.1 5,953,284 + Pf6N2E2_5164 0.70 +0.5 5,953,284 + Pf6N2E2_5164 0.70 +1.1 5,953,285 - Pf6N2E2_5164 0.70 -0.3 5,953,285 - Pf6N2E2_5164 0.70 -0.7
Or see this region's nucleotide sequence