Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4705

Experiment: thiosulfate 0.25 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4704 and Pf6N2E2_4705 overlap by 1 nucleotidesPf6N2E2_4705 and Pf6N2E2_4706 are separated by 13 nucleotides Pf6N2E2_4704 - Dimethylglycine dehydrogenase (ferredoxin), FeS subunit DgcB (EC 1.5.7.-) (from data), at 5,436,140 to 5,438,089 _4704 Pf6N2E2_4705 - Electron transfer flavoprotein, alpha subunit, at 5,438,089 to 5,439,309 _4705 Pf6N2E2_4706 - Electron transfer flavoprotein, beta subunit, at 5,439,323 to 5,440,093 _4706 Position (kb) 5438 5439 5440Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5437.535 kb on + strand, within Pf6N2E2_4704at 5437.535 kb on + strand, within Pf6N2E2_4704at 5437.535 kb on + strand, within Pf6N2E2_4704at 5437.535 kb on + strand, within Pf6N2E2_4704at 5437.535 kb on + strand, within Pf6N2E2_4704at 5437.535 kb on + strand, within Pf6N2E2_4704at 5437.535 kb on + strand, within Pf6N2E2_4704at 5437.536 kb on - strand, within Pf6N2E2_4704at 5437.581 kb on + strand, within Pf6N2E2_4704at 5437.581 kb on + strand, within Pf6N2E2_4704at 5437.595 kb on + strand, within Pf6N2E2_4704at 5437.616 kb on + strand, within Pf6N2E2_4704at 5437.616 kb on + strand, within Pf6N2E2_4704at 5437.616 kb on + strand, within Pf6N2E2_4704at 5437.617 kb on - strand, within Pf6N2E2_4704at 5437.640 kb on + strand, within Pf6N2E2_4704at 5437.640 kb on + strand, within Pf6N2E2_4704at 5437.640 kb on + strand, within Pf6N2E2_4704at 5437.640 kb on + strand, within Pf6N2E2_4704at 5437.640 kb on + strand, within Pf6N2E2_4704at 5437.640 kb on + strand, within Pf6N2E2_4704at 5437.640 kb on + strand, within Pf6N2E2_4704at 5437.640 kb on + strand, within Pf6N2E2_4704at 5437.640 kb on + strand, within Pf6N2E2_4704at 5437.640 kb on + strand, within Pf6N2E2_4704at 5437.640 kb on + strand, within Pf6N2E2_4704at 5437.640 kb on + strand, within Pf6N2E2_4704at 5437.640 kb on + strand, within Pf6N2E2_4704at 5437.640 kb on + strand, within Pf6N2E2_4704at 5437.640 kb on + strand, within Pf6N2E2_4704at 5437.640 kb on + strand, within Pf6N2E2_4704at 5437.640 kb on + strand, within Pf6N2E2_4704at 5437.640 kb on + strand, within Pf6N2E2_4704at 5437.641 kb on - strand, within Pf6N2E2_4704at 5437.641 kb on - strand, within Pf6N2E2_4704at 5437.641 kb on - strand, within Pf6N2E2_4704at 5437.641 kb on - strand, within Pf6N2E2_4704at 5437.641 kb on - strand, within Pf6N2E2_4704at 5437.641 kb on - strand, within Pf6N2E2_4704at 5437.641 kb on - strand, within Pf6N2E2_4704at 5437.641 kb on - strand, within Pf6N2E2_4704at 5437.641 kb on - strand, within Pf6N2E2_4704at 5437.641 kb on - strand, within Pf6N2E2_4704at 5437.641 kb on - strand, within Pf6N2E2_4704at 5437.641 kb on - strand, within Pf6N2E2_4704at 5437.641 kb on - strand, within Pf6N2E2_4704at 5437.641 kb on - strand, within Pf6N2E2_4704at 5437.641 kb on - strand, within Pf6N2E2_4704at 5437.641 kb on - strand, within Pf6N2E2_4704at 5437.641 kb on - strand, within Pf6N2E2_4704at 5437.643 kb on - strand, within Pf6N2E2_4704at 5437.643 kb on - strand, within Pf6N2E2_4704at 5437.721 kb on + strand, within Pf6N2E2_4704at 5437.734 kb on - strand, within Pf6N2E2_4704at 5437.734 kb on - strand, within Pf6N2E2_4704at 5437.745 kb on + strand, within Pf6N2E2_4704at 5437.746 kb on - strand, within Pf6N2E2_4704at 5438.087 kb on + strandat 5438.301 kb on + strand, within Pf6N2E2_4705at 5438.302 kb on - strand, within Pf6N2E2_4705at 5438.356 kb on + strand, within Pf6N2E2_4705at 5438.356 kb on + strand, within Pf6N2E2_4705at 5438.356 kb on + strand, within Pf6N2E2_4705at 5438.357 kb on - strand, within Pf6N2E2_4705at 5438.357 kb on - strand, within Pf6N2E2_4705at 5438.357 kb on - strand, within Pf6N2E2_4705at 5438.357 kb on - strand, within Pf6N2E2_4705at 5438.442 kb on + strand, within Pf6N2E2_4705at 5438.846 kb on + strand, within Pf6N2E2_4705at 5439.103 kb on + strand, within Pf6N2E2_4705at 5439.103 kb on + strand, within Pf6N2E2_4705at 5439.277 kb on + strandat 5439.278 kb on - strandat 5439.307 kb on + strandat 5439.308 kb on - strandat 5439.308 kb on - strandat 5439.316 kb on + strandat 5439.316 kb on + strandat 5439.316 kb on + strandat 5439.316 kb on + strandat 5439.317 kb on - strandat 5439.317 kb on - strandat 5439.317 kb on - strandat 5439.328 kb on + strandat 5439.328 kb on + strandat 5439.569 kb on + strand, within Pf6N2E2_4706at 5439.831 kb on - strand, within Pf6N2E2_4706at 5440.185 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction thiosulfate 0.25 M
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5,437,535 + Pf6N2E2_4704 0.72 +0.5
5,437,535 + Pf6N2E2_4704 0.72 +0.8
5,437,535 + Pf6N2E2_4704 0.72 -1.0
5,437,535 + Pf6N2E2_4704 0.72 -0.1
5,437,535 + Pf6N2E2_4704 0.72 -1.7
5,437,535 + Pf6N2E2_4704 0.72 -1.0
5,437,535 + Pf6N2E2_4704 0.72 +0.5
5,437,536 - Pf6N2E2_4704 0.72 -1.0
5,437,581 + Pf6N2E2_4704 0.74 +0.5
5,437,581 + Pf6N2E2_4704 0.74 -0.5
5,437,595 + Pf6N2E2_4704 0.75 +0.3
5,437,616 + Pf6N2E2_4704 0.76 +0.4
5,437,616 + Pf6N2E2_4704 0.76 +0.0
5,437,616 + Pf6N2E2_4704 0.76 -2.7
5,437,617 - Pf6N2E2_4704 0.76 +0.2
5,437,640 + Pf6N2E2_4704 0.77 -0.9
5,437,640 + Pf6N2E2_4704 0.77 -1.2
5,437,640 + Pf6N2E2_4704 0.77 -1.2
5,437,640 + Pf6N2E2_4704 0.77 -1.1
5,437,640 + Pf6N2E2_4704 0.77 +0.0
5,437,640 + Pf6N2E2_4704 0.77 +0.0
5,437,640 + Pf6N2E2_4704 0.77 +0.5
5,437,640 + Pf6N2E2_4704 0.77 -0.3
5,437,640 + Pf6N2E2_4704 0.77 +0.1
5,437,640 + Pf6N2E2_4704 0.77 +0.1
5,437,640 + Pf6N2E2_4704 0.77 -0.2
5,437,640 + Pf6N2E2_4704 0.77 -0.7
5,437,640 + Pf6N2E2_4704 0.77 -0.8
5,437,640 + Pf6N2E2_4704 0.77 +0.8
5,437,640 + Pf6N2E2_4704 0.77 +0.4
5,437,640 + Pf6N2E2_4704 0.77 +1.4
5,437,640 + Pf6N2E2_4704 0.77 -1.1
5,437,640 + Pf6N2E2_4704 0.77 +0.3
5,437,641 - Pf6N2E2_4704 0.77 +0.1
5,437,641 - Pf6N2E2_4704 0.77 -0.2
5,437,641 - Pf6N2E2_4704 0.77 +0.2
5,437,641 - Pf6N2E2_4704 0.77 -0.5
5,437,641 - Pf6N2E2_4704 0.77 +0.1
5,437,641 - Pf6N2E2_4704 0.77 +1.0
5,437,641 - Pf6N2E2_4704 0.77 -0.6
5,437,641 - Pf6N2E2_4704 0.77 +0.9
5,437,641 - Pf6N2E2_4704 0.77 +0.1
5,437,641 - Pf6N2E2_4704 0.77 +0.7
5,437,641 - Pf6N2E2_4704 0.77 +0.8
5,437,641 - Pf6N2E2_4704 0.77 -1.9
5,437,641 - Pf6N2E2_4704 0.77 +0.4
5,437,641 - Pf6N2E2_4704 0.77 +0.5
5,437,641 - Pf6N2E2_4704 0.77 +0.6
5,437,641 - Pf6N2E2_4704 0.77 +0.2
5,437,641 - Pf6N2E2_4704 0.77 -1.3
5,437,643 - Pf6N2E2_4704 0.77 -0.4
5,437,643 - Pf6N2E2_4704 0.77 +0.7
5,437,721 + Pf6N2E2_4704 0.81 -0.4
5,437,734 - Pf6N2E2_4704 0.82 +0.6
5,437,734 - Pf6N2E2_4704 0.82 +0.6
5,437,745 + Pf6N2E2_4704 0.82 -0.0
5,437,746 - Pf6N2E2_4704 0.82 -0.4
5,438,087 + -0.5
5,438,301 + Pf6N2E2_4705 0.17 +0.3
5,438,302 - Pf6N2E2_4705 0.17 -1.3
5,438,356 + Pf6N2E2_4705 0.22 -1.1
5,438,356 + Pf6N2E2_4705 0.22 +0.3
5,438,356 + Pf6N2E2_4705 0.22 -0.7
5,438,357 - Pf6N2E2_4705 0.22 +0.9
5,438,357 - Pf6N2E2_4705 0.22 -0.0
5,438,357 - Pf6N2E2_4705 0.22 -2.4
5,438,357 - Pf6N2E2_4705 0.22 -0.2
5,438,442 + Pf6N2E2_4705 0.29 -1.2
5,438,846 + Pf6N2E2_4705 0.62 -0.1
5,439,103 + Pf6N2E2_4705 0.83 -1.1
5,439,103 + Pf6N2E2_4705 0.83 -1.1
5,439,277 + -0.4
5,439,278 - -0.9
5,439,307 + +0.3
5,439,308 - +0.3
5,439,308 - +1.1
5,439,316 + +3.5
5,439,316 + +0.3
5,439,316 + +1.0
5,439,316 + +1.0
5,439,317 - +0.3
5,439,317 - -0.3
5,439,317 - -0.3
5,439,328 + +0.4
5,439,328 + +0.6
5,439,569 + Pf6N2E2_4706 0.32 +0.0
5,439,831 - Pf6N2E2_4706 0.66 -0.5
5,440,185 - -0.8

Or see this region's nucleotide sequence