Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_387

Experiment: thiosulfate 0.25 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_386 and Pf6N2E2_387 are separated by 3 nucleotidesPf6N2E2_387 and Pf6N2E2_388 are separated by 56 nucleotides Pf6N2E2_386 - similar to ribulose-1,5-bisphosphate carboxylase, Type III, at 452,708 to 453,985 _386 Pf6N2E2_387 - Candidate type III effector Hop protein, at 453,989 to 455,380 _387 Pf6N2E2_388 - Transporter, MFS superfamily, at 455,437 to 456,780 _388 Position (kb) 453 454 455 456Strain fitness (log2 ratio) -2 -1 0 1 2at 453.048 kb on + strand, within Pf6N2E2_386at 453.049 kb on - strand, within Pf6N2E2_386at 453.058 kb on - strand, within Pf6N2E2_386at 453.058 kb on - strand, within Pf6N2E2_386at 453.075 kb on + strand, within Pf6N2E2_386at 453.200 kb on - strand, within Pf6N2E2_386at 453.266 kb on - strand, within Pf6N2E2_386at 453.308 kb on + strand, within Pf6N2E2_386at 453.308 kb on + strand, within Pf6N2E2_386at 453.308 kb on + strand, within Pf6N2E2_386at 453.308 kb on + strand, within Pf6N2E2_386at 453.309 kb on - strand, within Pf6N2E2_386at 453.309 kb on - strand, within Pf6N2E2_386at 453.309 kb on - strand, within Pf6N2E2_386at 453.309 kb on - strand, within Pf6N2E2_386at 453.309 kb on - strand, within Pf6N2E2_386at 453.309 kb on - strand, within Pf6N2E2_386at 453.330 kb on + strand, within Pf6N2E2_386at 453.349 kb on - strand, within Pf6N2E2_386at 453.349 kb on - strand, within Pf6N2E2_386at 453.390 kb on - strand, within Pf6N2E2_386at 453.390 kb on - strand, within Pf6N2E2_386at 453.401 kb on - strand, within Pf6N2E2_386at 453.511 kb on + strand, within Pf6N2E2_386at 453.531 kb on + strand, within Pf6N2E2_386at 453.531 kb on + strand, within Pf6N2E2_386at 453.531 kb on + strand, within Pf6N2E2_386at 453.532 kb on - strand, within Pf6N2E2_386at 453.532 kb on - strand, within Pf6N2E2_386at 453.535 kb on + strand, within Pf6N2E2_386at 453.536 kb on - strand, within Pf6N2E2_386at 453.536 kb on - strand, within Pf6N2E2_386at 453.536 kb on - strand, within Pf6N2E2_386at 453.606 kb on - strand, within Pf6N2E2_386at 453.691 kb on + strand, within Pf6N2E2_386at 453.691 kb on + strand, within Pf6N2E2_386at 453.692 kb on - strand, within Pf6N2E2_386at 453.842 kb on - strand, within Pf6N2E2_386at 453.855 kb on + strand, within Pf6N2E2_386at 453.856 kb on - strand, within Pf6N2E2_386at 453.929 kb on + strandat 453.929 kb on + strandat 453.930 kb on - strandat 453.981 kb on + strandat 453.981 kb on + strandat 453.982 kb on - strandat 453.984 kb on - strandat 453.984 kb on - strandat 454.029 kb on - strandat 454.029 kb on - strandat 454.129 kb on - strand, within Pf6N2E2_387at 454.129 kb on - strand, within Pf6N2E2_387at 454.219 kb on - strand, within Pf6N2E2_387at 454.639 kb on + strand, within Pf6N2E2_387at 454.640 kb on - strand, within Pf6N2E2_387at 454.651 kb on + strand, within Pf6N2E2_387at 454.651 kb on + strand, within Pf6N2E2_387at 454.651 kb on + strand, within Pf6N2E2_387at 454.652 kb on - strand, within Pf6N2E2_387at 454.652 kb on - strand, within Pf6N2E2_387at 454.652 kb on - strand, within Pf6N2E2_387at 454.687 kb on + strand, within Pf6N2E2_387at 454.740 kb on + strand, within Pf6N2E2_387at 454.770 kb on + strand, within Pf6N2E2_387at 454.771 kb on - strand, within Pf6N2E2_387at 454.933 kb on + strand, within Pf6N2E2_387at 454.934 kb on - strand, within Pf6N2E2_387at 455.157 kb on - strand, within Pf6N2E2_387at 455.177 kb on - strand, within Pf6N2E2_387at 455.177 kb on - strand, within Pf6N2E2_387at 455.177 kb on - strand, within Pf6N2E2_387at 455.179 kb on - strand, within Pf6N2E2_387at 455.192 kb on - strand, within Pf6N2E2_387at 455.295 kb on - strandat 455.295 kb on - strandat 455.348 kb on + strandat 455.349 kb on - strandat 455.349 kb on - strandat 455.355 kb on + strandat 455.356 kb on - strandat 455.356 kb on - strandat 455.415 kb on + strandat 455.416 kb on - strandat 455.421 kb on - strandat 455.454 kb on - strandat 455.554 kb on + strandat 455.554 kb on + strandat 455.554 kb on + strandat 455.555 kb on - strandat 455.555 kb on - strandat 455.564 kb on - strandat 455.570 kb on - strandat 455.570 kb on - strandat 455.794 kb on - strand, within Pf6N2E2_388at 455.875 kb on + strand, within Pf6N2E2_388at 455.897 kb on + strand, within Pf6N2E2_388at 455.897 kb on + strand, within Pf6N2E2_388at 455.897 kb on + strand, within Pf6N2E2_388at 455.898 kb on - strand, within Pf6N2E2_388at 455.898 kb on - strand, within Pf6N2E2_388at 455.898 kb on - strand, within Pf6N2E2_388at 455.898 kb on - strand, within Pf6N2E2_388at 455.949 kb on + strand, within Pf6N2E2_388at 456.008 kb on + strand, within Pf6N2E2_388at 456.008 kb on + strand, within Pf6N2E2_388at 456.009 kb on - strand, within Pf6N2E2_388at 456.028 kb on + strand, within Pf6N2E2_388at 456.031 kb on - strand, within Pf6N2E2_388at 456.149 kb on + strand, within Pf6N2E2_388at 456.167 kb on + strand, within Pf6N2E2_388at 456.167 kb on + strand, within Pf6N2E2_388at 456.202 kb on - strand, within Pf6N2E2_388at 456.209 kb on + strand, within Pf6N2E2_388at 456.209 kb on + strand, within Pf6N2E2_388at 456.254 kb on - strand, within Pf6N2E2_388at 456.280 kb on + strand, within Pf6N2E2_388at 456.280 kb on + strand, within Pf6N2E2_388at 456.280 kb on + strand, within Pf6N2E2_388

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Per-strain Table

Position Strand Gene LocusTag Fraction thiosulfate 0.25 M
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453,048 + Pf6N2E2_386 0.27 +0.6
453,049 - Pf6N2E2_386 0.27 +1.8
453,058 - Pf6N2E2_386 0.27 +0.4
453,058 - Pf6N2E2_386 0.27 +0.8
453,075 + Pf6N2E2_386 0.29 +1.0
453,200 - Pf6N2E2_386 0.38 -0.9
453,266 - Pf6N2E2_386 0.44 +1.8
453,308 + Pf6N2E2_386 0.47 -0.4
453,308 + Pf6N2E2_386 0.47 +0.3
453,308 + Pf6N2E2_386 0.47 +1.1
453,308 + Pf6N2E2_386 0.47 +0.1
453,309 - Pf6N2E2_386 0.47 -0.2
453,309 - Pf6N2E2_386 0.47 +0.8
453,309 - Pf6N2E2_386 0.47 +1.8
453,309 - Pf6N2E2_386 0.47 +0.9
453,309 - Pf6N2E2_386 0.47 -0.1
453,309 - Pf6N2E2_386 0.47 -0.1
453,330 + Pf6N2E2_386 0.49 +1.0
453,349 - Pf6N2E2_386 0.50 +1.5
453,349 - Pf6N2E2_386 0.50 -0.5
453,390 - Pf6N2E2_386 0.53 +0.2
453,390 - Pf6N2E2_386 0.53 -1.7
453,401 - Pf6N2E2_386 0.54 +0.6
453,511 + Pf6N2E2_386 0.63 -0.9
453,531 + Pf6N2E2_386 0.64 -0.5
453,531 + Pf6N2E2_386 0.64 +0.4
453,531 + Pf6N2E2_386 0.64 +0.8
453,532 - Pf6N2E2_386 0.64 +0.5
453,532 - Pf6N2E2_386 0.64 +1.3
453,535 + Pf6N2E2_386 0.65 +0.7
453,536 - Pf6N2E2_386 0.65 -0.8
453,536 - Pf6N2E2_386 0.65 -0.2
453,536 - Pf6N2E2_386 0.65 -1.4
453,606 - Pf6N2E2_386 0.70 -0.3
453,691 + Pf6N2E2_386 0.77 +0.4
453,691 + Pf6N2E2_386 0.77 +0.2
453,692 - Pf6N2E2_386 0.77 +0.2
453,842 - Pf6N2E2_386 0.89 -0.7
453,855 + Pf6N2E2_386 0.90 +0.1
453,856 - Pf6N2E2_386 0.90 +0.9
453,929 + -1.4
453,929 + -0.8
453,930 - +1.0
453,981 + +2.5
453,981 + -0.1
453,982 - +0.4
453,984 - +0.8
453,984 - +1.1
454,029 - +0.8
454,029 - -1.4
454,129 - Pf6N2E2_387 0.10 +0.7
454,129 - Pf6N2E2_387 0.10 +1.0
454,219 - Pf6N2E2_387 0.17 +0.8
454,639 + Pf6N2E2_387 0.47 -0.7
454,640 - Pf6N2E2_387 0.47 +0.0
454,651 + Pf6N2E2_387 0.48 +1.0
454,651 + Pf6N2E2_387 0.48 +0.5
454,651 + Pf6N2E2_387 0.48 +0.9
454,652 - Pf6N2E2_387 0.48 +0.1
454,652 - Pf6N2E2_387 0.48 -0.1
454,652 - Pf6N2E2_387 0.48 +1.4
454,687 + Pf6N2E2_387 0.50 -2.0
454,740 + Pf6N2E2_387 0.54 +0.1
454,770 + Pf6N2E2_387 0.56 +0.7
454,771 - Pf6N2E2_387 0.56 +0.1
454,933 + Pf6N2E2_387 0.68 -0.0
454,934 - Pf6N2E2_387 0.68 -2.6
455,157 - Pf6N2E2_387 0.84 +0.4
455,177 - Pf6N2E2_387 0.85 +0.5
455,177 - Pf6N2E2_387 0.85 -1.2
455,177 - Pf6N2E2_387 0.85 +0.2
455,179 - Pf6N2E2_387 0.85 +0.3
455,192 - Pf6N2E2_387 0.86 +0.7
455,295 - -0.2
455,295 - +0.5
455,348 + +2.2
455,349 - -2.3
455,349 - +0.1
455,355 + +0.7
455,356 - -0.1
455,356 - -0.7
455,415 + -0.2
455,416 - +0.5
455,421 - -0.2
455,454 - -0.2
455,554 + -1.6
455,554 + +0.3
455,554 + -0.3
455,555 - -0.4
455,555 - -1.6
455,564 - -0.2
455,570 - +1.8
455,570 - -1.2
455,794 - Pf6N2E2_388 0.27 +0.4
455,875 + Pf6N2E2_388 0.33 -0.4
455,897 + Pf6N2E2_388 0.34 +0.8
455,897 + Pf6N2E2_388 0.34 +0.5
455,897 + Pf6N2E2_388 0.34 +0.4
455,898 - Pf6N2E2_388 0.34 -0.5
455,898 - Pf6N2E2_388 0.34 -0.4
455,898 - Pf6N2E2_388 0.34 -0.4
455,898 - Pf6N2E2_388 0.34 +1.3
455,949 + Pf6N2E2_388 0.38 +0.5
456,008 + Pf6N2E2_388 0.42 +0.2
456,008 + Pf6N2E2_388 0.42 +0.1
456,009 - Pf6N2E2_388 0.43 +0.5
456,028 + Pf6N2E2_388 0.44 -0.7
456,031 - Pf6N2E2_388 0.44 +0.3
456,149 + Pf6N2E2_388 0.53 +0.3
456,167 + Pf6N2E2_388 0.54 -0.5
456,167 + Pf6N2E2_388 0.54 +0.8
456,202 - Pf6N2E2_388 0.57 +0.6
456,209 + Pf6N2E2_388 0.57 +0.6
456,209 + Pf6N2E2_388 0.57 +0.3
456,254 - Pf6N2E2_388 0.61 -0.5
456,280 + Pf6N2E2_388 0.63 -0.3
456,280 + Pf6N2E2_388 0.63 -0.1
456,280 + Pf6N2E2_388 0.63 -0.6

Or see this region's nucleotide sequence