Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01280 and MMP_RS01285 overlap by 1 nucleotides MMP_RS01285 and MMP_RS01290 are separated by 33 nucleotides MMP_RS01290 and MMP_RS01295 overlap by 23 nucleotides MMP_RS01295 and MMP_RS01300 are separated by 51 nucleotides MMP_RS01300 and MMP_RS01305 are separated by 1 nucleotides
MMP_RS01280: MMP_RS01280 - DUF515 domain-containing protein, at 241,487 to 242,635
_RS01280
MMP_RS01285: MMP_RS01285 - hypothetical protein, at 242,635 to 243,528
_RS01285
MMP_RS01290: MMP_RS01290 - class III signal peptide-containing protein, at 243,562 to 243,960
_RS01290
MMP_RS01295: MMP_RS01295 - hypothetical protein, at 243,938 to 244,393
_RS01295
MMP_RS01300: MMP_RS01300 - hypothetical protein, at 244,445 to 244,930
_RS01300
MMP_RS01305: MMP_RS01305 - hypothetical protein, at 244,932 to 245,789
_RS01305
Position (kb) 243
244 Strain fitness (log2 ratio) -1
0
1 at 242.606 kb on - strand at 242.630 kb on + strand at 242.652 kb on + strand at 242.656 kb on - strand at 242.656 kb on - strand at 242.721 kb on - strand at 242.722 kb on + strand at 242.734 kb on - strand, within MMP_RS01285 at 242.758 kb on + strand, within MMP_RS01285 at 242.892 kb on - strand, within MMP_RS01285 at 243.008 kb on - strand, within MMP_RS01285 at 243.009 kb on + strand, within MMP_RS01285 at 243.011 kb on - strand, within MMP_RS01285 at 243.015 kb on - strand, within MMP_RS01285 at 243.072 kb on + strand, within MMP_RS01285 at 243.114 kb on + strand, within MMP_RS01285 at 243.114 kb on + strand, within MMP_RS01285 at 243.188 kb on - strand, within MMP_RS01285 at 243.239 kb on - strand, within MMP_RS01285 at 243.292 kb on + strand, within MMP_RS01285 at 243.292 kb on + strand, within MMP_RS01285 at 243.292 kb on + strand, within MMP_RS01285 at 243.393 kb on + strand, within MMP_RS01285 at 243.437 kb on + strand, within MMP_RS01285 at 243.439 kb on + strand at 243.442 kb on + strand at 243.532 kb on + strand at 243.558 kb on - strand at 243.629 kb on - strand, within MMP_RS01290 at 243.843 kb on - strand, within MMP_RS01290 at 243.843 kb on - strand, within MMP_RS01290 at 243.844 kb on + strand, within MMP_RS01290 at 243.844 kb on + strand, within MMP_RS01290 at 243.845 kb on - strand, within MMP_RS01290 at 243.845 kb on - strand, within MMP_RS01290 at 243.846 kb on + strand, within MMP_RS01290 at 243.846 kb on + strand, within MMP_RS01290 at 243.849 kb on - strand, within MMP_RS01290 at 243.850 kb on + strand, within MMP_RS01290 at 243.855 kb on - strand, within MMP_RS01290 at 243.870 kb on + strand, within MMP_RS01290 at 243.870 kb on + strand, within MMP_RS01290 at 243.877 kb on - strand, within MMP_RS01290 at 243.878 kb on + strand, within MMP_RS01290 at 243.878 kb on + strand, within MMP_RS01290 at 243.879 kb on - strand, within MMP_RS01290 at 243.879 kb on - strand, within MMP_RS01290 at 243.884 kb on + strand, within MMP_RS01290 at 243.884 kb on + strand, within MMP_RS01290 at 243.999 kb on - strand, within MMP_RS01295 at 244.000 kb on + strand, within MMP_RS01295 at 244.131 kb on + strand, within MMP_RS01295 at 244.185 kb on + strand, within MMP_RS01295 at 244.189 kb on - strand, within MMP_RS01295 at 244.189 kb on - strand, within MMP_RS01295 at 244.190 kb on + strand, within MMP_RS01295 at 244.190 kb on + strand, within MMP_RS01295 at 244.190 kb on + strand, within MMP_RS01295 at 244.191 kb on - strand, within MMP_RS01295 at 244.214 kb on + strand, within MMP_RS01295 at 244.229 kb on + strand, within MMP_RS01295 at 244.288 kb on - strand, within MMP_RS01295 at 244.313 kb on + strand, within MMP_RS01295 at 244.336 kb on - strand, within MMP_RS01295 at 244.336 kb on - strand, within MMP_RS01295 at 244.336 kb on - strand, within MMP_RS01295 at 244.336 kb on - strand, within MMP_RS01295 at 244.336 kb on - strand, within MMP_RS01295 at 244.337 kb on + strand, within MMP_RS01295 at 244.337 kb on + strand, within MMP_RS01295 at 244.381 kb on - strand at 244.407 kb on + strand at 244.414 kb on + strand at 244.439 kb on - strand at 244.441 kb on - strand at 244.471 kb on - strand at 244.472 kb on + strand at 244.491 kb on - strand at 244.534 kb on + strand, within MMP_RS01300 at 244.588 kb on - strand, within MMP_RS01300 at 244.606 kb on - strand, within MMP_RS01300 at 244.606 kb on - strand, within MMP_RS01300 at 244.606 kb on - strand, within MMP_RS01300 at 244.606 kb on - strand, within MMP_RS01300 at 244.606 kb on - strand, within MMP_RS01300 at 244.606 kb on - strand, within MMP_RS01300 at 244.607 kb on + strand, within MMP_RS01300 at 244.610 kb on - strand, within MMP_RS01300 at 244.610 kb on - strand, within MMP_RS01300 at 244.610 kb on - strand, within MMP_RS01300 at 244.610 kb on - strand, within MMP_RS01300 at 244.610 kb on - strand, within MMP_RS01300 at 244.610 kb on - strand, within MMP_RS01300 at 244.610 kb on - strand, within MMP_RS01300 at 244.610 kb on - strand, within MMP_RS01300 at 244.611 kb on + strand, within MMP_RS01300 at 244.611 kb on + strand, within MMP_RS01300 at 244.611 kb on + strand, within MMP_RS01300 at 244.612 kb on - strand, within MMP_RS01300 at 244.612 kb on - strand, within MMP_RS01300 at 244.612 kb on - strand, within MMP_RS01300 at 244.612 kb on - strand, within MMP_RS01300 at 244.612 kb on - strand, within MMP_RS01300 at 244.613 kb on + strand, within MMP_RS01300 at 244.613 kb on + strand, within MMP_RS01300 at 244.613 kb on + strand, within MMP_RS01300 at 244.614 kb on - strand, within MMP_RS01300 at 244.614 kb on - strand, within MMP_RS01300 at 244.615 kb on + strand, within MMP_RS01300 at 244.615 kb on + strand, within MMP_RS01300 at 244.623 kb on + strand, within MMP_RS01300 at 244.623 kb on + strand, within MMP_RS01300 at 244.653 kb on - strand, within MMP_RS01300 at 244.653 kb on - strand, within MMP_RS01300 at 244.664 kb on + strand, within MMP_RS01300 at 244.664 kb on + strand, within MMP_RS01300 at 244.667 kb on - strand, within MMP_RS01300 at 244.733 kb on + strand, within MMP_RS01300 at 244.735 kb on - strand, within MMP_RS01300 at 244.735 kb on - strand, within MMP_RS01300 at 244.742 kb on + strand, within MMP_RS01300 at 244.798 kb on - strand, within MMP_RS01300 at 244.798 kb on - strand, within MMP_RS01300 at 244.799 kb on + strand, within MMP_RS01300
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 242,606 - +0.6 242,630 + +0.3 242,652 + +0.2 242,656 - +0.0 242,656 - -0.4 242,721 - +0.0 242,722 + +0.3 242,734 - MMP_RS01285 0.11 +0.5 242,758 + MMP_RS01285 0.14 -0.0 242,892 - MMP_RS01285 0.29 +0.4 243,008 - MMP_RS01285 0.42 -0.1 243,009 + MMP_RS01285 0.42 +0.1 243,011 - MMP_RS01285 0.42 -0.4 243,015 - MMP_RS01285 0.43 +0.7 243,072 + MMP_RS01285 0.49 +0.3 243,114 + MMP_RS01285 0.54 -0.3 243,114 + MMP_RS01285 0.54 -0.3 243,188 - MMP_RS01285 0.62 -0.1 243,239 - MMP_RS01285 0.68 +0.1 243,292 + MMP_RS01285 0.73 +0.3 243,292 + MMP_RS01285 0.73 +0.6 243,292 + MMP_RS01285 0.73 -0.3 243,393 + MMP_RS01285 0.85 +0.2 243,437 + MMP_RS01285 0.90 +0.0 243,439 + +1.0 243,442 + +0.1 243,532 + -0.1 243,558 - -0.1 243,629 - MMP_RS01290 0.17 +0.1 243,843 - MMP_RS01290 0.70 +0.3 243,843 - MMP_RS01290 0.70 +0.1 243,844 + MMP_RS01290 0.71 +0.2 243,844 + MMP_RS01290 0.71 -0.2 243,845 - MMP_RS01290 0.71 +0.1 243,845 - MMP_RS01290 0.71 -0.1 243,846 + MMP_RS01290 0.71 +0.0 243,846 + MMP_RS01290 0.71 +0.5 243,849 - MMP_RS01290 0.72 -0.0 243,850 + MMP_RS01290 0.72 +0.1 243,855 - MMP_RS01290 0.73 -0.3 243,870 + MMP_RS01290 0.77 +0.0 243,870 + MMP_RS01290 0.77 +0.1 243,877 - MMP_RS01290 0.79 +0.2 243,878 + MMP_RS01290 0.79 +0.4 243,878 + MMP_RS01290 0.79 +0.2 243,879 - MMP_RS01290 0.79 -0.0 243,879 - MMP_RS01290 0.79 +0.1 243,884 + MMP_RS01290 0.81 +0.1 243,884 + MMP_RS01290 0.81 +0.2 243,999 - MMP_RS01295 0.13 +0.4 244,000 + MMP_RS01295 0.14 +0.2 244,131 + MMP_RS01295 0.42 +0.4 244,185 + MMP_RS01295 0.54 +0.0 244,189 - MMP_RS01295 0.55 +0.2 244,189 - MMP_RS01295 0.55 -0.1 244,190 + MMP_RS01295 0.55 +0.2 244,190 + MMP_RS01295 0.55 -0.3 244,190 + MMP_RS01295 0.55 -0.0 244,191 - MMP_RS01295 0.55 +0.0 244,214 + MMP_RS01295 0.61 +0.4 244,229 + MMP_RS01295 0.64 -0.3 244,288 - MMP_RS01295 0.77 +0.2 244,313 + MMP_RS01295 0.82 +0.3 244,336 - MMP_RS01295 0.87 -0.7 244,336 - MMP_RS01295 0.87 -0.1 244,336 - MMP_RS01295 0.87 -0.0 244,336 - MMP_RS01295 0.87 +0.1 244,336 - MMP_RS01295 0.87 -0.3 244,337 + MMP_RS01295 0.88 +0.9 244,337 + MMP_RS01295 0.88 +0.0 244,381 - +0.3 244,407 + -0.0 244,414 + +0.2 244,439 - -0.2 244,441 - +0.0 244,471 - +0.0 244,472 + +0.1 244,491 - +1.1 244,534 + MMP_RS01300 0.18 +0.0 244,588 - MMP_RS01300 0.29 -0.1 244,606 - MMP_RS01300 0.33 +0.1 244,606 - MMP_RS01300 0.33 +0.5 244,606 - MMP_RS01300 0.33 +0.2 244,606 - MMP_RS01300 0.33 -0.3 244,606 - MMP_RS01300 0.33 -0.2 244,606 - MMP_RS01300 0.33 -0.1 244,607 + MMP_RS01300 0.33 +0.5 244,610 - MMP_RS01300 0.34 +0.3 244,610 - MMP_RS01300 0.34 +0.4 244,610 - MMP_RS01300 0.34 -0.3 244,610 - MMP_RS01300 0.34 +0.5 244,610 - MMP_RS01300 0.34 -0.1 244,610 - MMP_RS01300 0.34 -0.0 244,610 - MMP_RS01300 0.34 -0.2 244,610 - MMP_RS01300 0.34 +0.1 244,611 + MMP_RS01300 0.34 +0.4 244,611 + MMP_RS01300 0.34 -0.2 244,611 + MMP_RS01300 0.34 +0.0 244,612 - MMP_RS01300 0.34 +0.2 244,612 - MMP_RS01300 0.34 -0.5 244,612 - MMP_RS01300 0.34 +0.0 244,612 - MMP_RS01300 0.34 -0.3 244,612 - MMP_RS01300 0.34 +1.2 244,613 + MMP_RS01300 0.35 -0.2 244,613 + MMP_RS01300 0.35 -0.2 244,613 + MMP_RS01300 0.35 +0.5 244,614 - MMP_RS01300 0.35 +0.3 244,614 - MMP_RS01300 0.35 +1.3 244,615 + MMP_RS01300 0.35 -0.5 244,615 + MMP_RS01300 0.35 +0.3 244,623 + MMP_RS01300 0.37 +0.3 244,623 + MMP_RS01300 0.37 -0.1 244,653 - MMP_RS01300 0.43 +0.1 244,653 - MMP_RS01300 0.43 +0.9 244,664 + MMP_RS01300 0.45 -0.1 244,664 + MMP_RS01300 0.45 -0.1 244,667 - MMP_RS01300 0.46 -0.2 244,733 + MMP_RS01300 0.59 +0.5 244,735 - MMP_RS01300 0.60 -0.1 244,735 - MMP_RS01300 0.60 +0.2 244,742 + MMP_RS01300 0.61 +0.2 244,798 - MMP_RS01300 0.73 +1.0 244,798 - MMP_RS01300 0.73 +0.2 244,799 + MMP_RS01300 0.73 -0.7
Or see this region's nucleotide sequence