Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00475 and MMP_RS00480 are separated by 317 nucleotides MMP_RS00480 and MMP_RS00485 are separated by 51 nucleotides
MMP_RS00475: MMP_RS00475 - Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain, at 93,984 to 95,063
_RS00475
MMP_RS00480: MMP_RS00480 - hypothetical protein, at 95,381 to 96,079
_RS00480
MMP_RS00485: MMP_RS00485 - mRNA surveillance protein pelota, at 96,131 to 97,177
_RS00485
Position (kb) 95
96
97 Strain fitness (log2 ratio) -2
-1
0
1 at 94.413 kb on + strand, within MMP_RS00475 at 94.485 kb on - strand, within MMP_RS00475 at 94.720 kb on - strand, within MMP_RS00475 at 94.824 kb on - strand, within MMP_RS00475 at 94.824 kb on - strand, within MMP_RS00475 at 94.824 kb on - strand, within MMP_RS00475 at 94.825 kb on + strand, within MMP_RS00475 at 94.877 kb on - strand, within MMP_RS00475 at 94.877 kb on - strand, within MMP_RS00475 at 94.928 kb on + strand, within MMP_RS00475 at 95.071 kb on - strand at 95.071 kb on - strand at 95.101 kb on - strand at 95.179 kb on - strand at 95.227 kb on + strand at 95.272 kb on + strand at 95.281 kb on + strand at 95.315 kb on - strand at 95.315 kb on - strand at 95.315 kb on - strand at 95.348 kb on - strand at 95.373 kb on - strand at 95.445 kb on - strand at 95.452 kb on + strand, within MMP_RS00480 at 95.466 kb on - strand, within MMP_RS00480 at 95.475 kb on - strand, within MMP_RS00480 at 95.475 kb on - strand, within MMP_RS00480 at 95.513 kb on - strand, within MMP_RS00480 at 95.513 kb on - strand, within MMP_RS00480 at 95.514 kb on + strand, within MMP_RS00480 at 95.563 kb on - strand, within MMP_RS00480 at 95.804 kb on - strand, within MMP_RS00480 at 95.856 kb on + strand, within MMP_RS00480 at 95.970 kb on + strand, within MMP_RS00480 at 96.002 kb on - strand, within MMP_RS00480 at 96.009 kb on - strand, within MMP_RS00480 at 96.009 kb on - strand, within MMP_RS00480 at 96.055 kb on - strand at 96.055 kb on - strand at 96.055 kb on - strand at 96.056 kb on + strand at 96.058 kb on - strand at 96.058 kb on - strand at 96.058 kb on - strand at 96.058 kb on - strand at 96.060 kb on - strand at 96.072 kb on - strand at 96.126 kb on + strand at 96.132 kb on - strand at 96.133 kb on + strand at 96.534 kb on - strand at 96.940 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 94,413 + MMP_RS00475 0.40 -0.6 94,485 - MMP_RS00475 0.46 -0.1 94,720 - MMP_RS00475 0.68 +0.4 94,824 - MMP_RS00475 0.78 -0.2 94,824 - MMP_RS00475 0.78 +0.7 94,824 - MMP_RS00475 0.78 -0.4 94,825 + MMP_RS00475 0.78 +0.3 94,877 - MMP_RS00475 0.83 -0.6 94,877 - MMP_RS00475 0.83 -0.1 94,928 + MMP_RS00475 0.87 -0.8 95,071 - -0.3 95,071 - +0.3 95,101 - +0.0 95,179 - -0.2 95,227 + +0.4 95,272 + -0.3 95,281 + +0.1 95,315 - +0.2 95,315 - +0.5 95,315 - -0.3 95,348 - +0.0 95,373 - -0.3 95,445 - -0.0 95,452 + MMP_RS00480 0.10 -0.6 95,466 - MMP_RS00480 0.12 -0.1 95,475 - MMP_RS00480 0.13 +0.0 95,475 - MMP_RS00480 0.13 +0.1 95,513 - MMP_RS00480 0.19 -0.0 95,513 - MMP_RS00480 0.19 +0.2 95,514 + MMP_RS00480 0.19 +0.2 95,563 - MMP_RS00480 0.26 -0.1 95,804 - MMP_RS00480 0.61 -0.2 95,856 + MMP_RS00480 0.68 -0.2 95,970 + MMP_RS00480 0.84 -0.0 96,002 - MMP_RS00480 0.89 -0.1 96,009 - MMP_RS00480 0.90 +0.3 96,009 - MMP_RS00480 0.90 +0.2 96,055 - +0.0 96,055 - +0.3 96,055 - +0.3 96,056 + +0.1 96,058 - +0.5 96,058 - +0.8 96,058 - -0.0 96,058 - +0.3 96,060 - +0.1 96,072 - -0.0 96,126 + -0.1 96,132 - -0.0 96,133 + -0.0 96,534 - -2.4 96,940 - -2.6
Or see this region's nucleotide sequence