Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00425 and MMP_RS00430 are separated by 69 nucleotides MMP_RS00430 and MMP_RS00435 overlap by 12 nucleotides
MMP_RS00425: MMP_RS00425 - argininosuccinate synthase, at 84,962 to 86,155
_RS00425
MMP_RS00430: MMP_RS00430 - hypothetical protein, at 86,225 to 86,581
_RS00430
MMP_RS00435: MMP_RS00435 - CPBP family intramembrane metalloprotease, at 86,570 to 87,379
_RS00435
Position (kb) 86
87 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 85.434 kb on + strand at 86.476 kb on - strand, within MMP_RS00430 at 86.476 kb on - strand, within MMP_RS00430 at 86.478 kb on - strand, within MMP_RS00430 at 86.610 kb on + strand at 86.673 kb on + strand, within MMP_RS00435 at 86.679 kb on + strand, within MMP_RS00435 at 86.684 kb on - strand, within MMP_RS00435 at 86.734 kb on - strand, within MMP_RS00435 at 86.737 kb on + strand, within MMP_RS00435 at 86.789 kb on - strand, within MMP_RS00435 at 86.790 kb on + strand, within MMP_RS00435 at 86.851 kb on - strand, within MMP_RS00435 at 86.855 kb on - strand, within MMP_RS00435 at 86.855 kb on - strand, within MMP_RS00435 at 86.855 kb on - strand, within MMP_RS00435 at 86.855 kb on - strand, within MMP_RS00435 at 86.856 kb on + strand, within MMP_RS00435 at 86.902 kb on - strand, within MMP_RS00435 at 86.902 kb on - strand, within MMP_RS00435 at 86.940 kb on - strand, within MMP_RS00435 at 86.968 kb on - strand, within MMP_RS00435 at 86.987 kb on - strand, within MMP_RS00435 at 87.110 kb on - strand, within MMP_RS00435 at 87.113 kb on + strand, within MMP_RS00435 at 87.134 kb on - strand, within MMP_RS00435 at 87.218 kb on + strand, within MMP_RS00435 at 87.363 kb on - strand at 87.368 kb on - strand at 87.488 kb on - strand at 87.491 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 85,434 + -3.0 86,476 - MMP_RS00430 0.70 -0.6 86,476 - MMP_RS00430 0.70 -0.7 86,478 - MMP_RS00430 0.71 -0.4 86,610 + -0.2 86,673 + MMP_RS00435 0.13 +0.3 86,679 + MMP_RS00435 0.13 -0.2 86,684 - MMP_RS00435 0.14 -0.3 86,734 - MMP_RS00435 0.20 +0.6 86,737 + MMP_RS00435 0.21 +0.2 86,789 - MMP_RS00435 0.27 +0.1 86,790 + MMP_RS00435 0.27 +0.5 86,851 - MMP_RS00435 0.35 +0.0 86,855 - MMP_RS00435 0.35 -0.2 86,855 - MMP_RS00435 0.35 +0.0 86,855 - MMP_RS00435 0.35 +0.1 86,855 - MMP_RS00435 0.35 +0.5 86,856 + MMP_RS00435 0.35 +0.0 86,902 - MMP_RS00435 0.41 -0.1 86,902 - MMP_RS00435 0.41 -0.4 86,940 - MMP_RS00435 0.46 -0.0 86,968 - MMP_RS00435 0.49 +0.5 86,987 - MMP_RS00435 0.51 -0.0 87,110 - MMP_RS00435 0.67 +0.1 87,113 + MMP_RS00435 0.67 +0.6 87,134 - MMP_RS00435 0.70 +0.7 87,218 + MMP_RS00435 0.80 -0.4 87,363 - +0.1 87,368 - +1.4 87,488 - -0.0 87,491 + +0.3
Or see this region's nucleotide sequence