Strain Fitness in Pantoea sp. MT58 around IAI47_11580

Experiment: Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,453,351	+		IAI47_11575	0.37	-0.5
2,453,533	+		IAI47_11575	0.49	-0.2
2,453,533	+		IAI47_11575	0.49	-0.6
2,453,534	-		IAI47_11575	0.49	+2.0
2,453,537	+		IAI47_11575	0.50	-0.8
2,453,537	+		IAI47_11575	0.50	+0.8
2,453,537	+		IAI47_11575	0.50	-2.0
2,453,538	-		IAI47_11575	0.50	+0.2
2,453,538	-		IAI47_11575	0.50	+1.5
2,453,591	+		IAI47_11575	0.53	-0.2
2,453,591	+		IAI47_11575	0.53	-0.0
2,453,592	-		IAI47_11575	0.53	+1.0
2,453,614	+		IAI47_11575	0.55	+0.1
2,453,614	+		IAI47_11575	0.55	+2.4
2,453,614	+		IAI47_11575	0.55	-1.5
2,453,614	+		IAI47_11575	0.55	-0.8
2,453,614	+		IAI47_11575	0.55	+1.3
2,453,614	+		IAI47_11575	0.55	-3.0
2,453,614	+		IAI47_11575	0.55	+2.9
2,453,614	+		IAI47_11575	0.55	-1.5
2,453,614	+		IAI47_11575	0.55	+1.8
2,453,615	-		IAI47_11575	0.55	-0.0
2,453,615	-		IAI47_11575	0.55	-0.5
2,453,615	-		IAI47_11575	0.55	+1.5
2,453,615	-		IAI47_11575	0.55	+0.9
2,453,615	-		IAI47_11575	0.55	+0.5
2,453,615	-		IAI47_11575	0.55	-0.5
2,453,615	-		IAI47_11575	0.55	+1.5
2,453,618	+		IAI47_11575	0.55	+0.7
2,453,618	+		IAI47_11575	0.55	+1.1
2,453,659	+		IAI47_11575	0.58	+0.3
2,453,659	+		IAI47_11575	0.58	+1.5
2,453,659	+		IAI47_11575	0.58	-2.0
2,453,659	+		IAI47_11575	0.58	+2.5
2,453,659	+		IAI47_11575	0.58	-2.8
2,453,659	+		IAI47_11575	0.58	+1.8
2,453,660	-		IAI47_11575	0.58	+1.1
2,453,660	-		IAI47_11575	0.58	+2.0
2,453,660	-		IAI47_11575	0.58	+1.4
2,453,667	+		IAI47_11575	0.58	+0.0
2,453,668	-		IAI47_11575	0.58	+0.5
2,453,786	+		IAI47_11575	0.66	+0.9
2,453,798	+		IAI47_11575	0.67	-0.8
2,453,798	+		IAI47_11575	0.67	+3.5
2,453,798	+		IAI47_11575	0.67	+2.1
2,453,798	+		IAI47_11575	0.67	+0.1
2,453,835	-		IAI47_11575	0.69	+0.7
2,453,883	+		IAI47_11575	0.73	+1.0
2,453,950	+		IAI47_11575	0.77	+2.0
2,453,950	+		IAI47_11575	0.77	-0.3
2,453,950	+		IAI47_11575	0.77	+0.1
2,453,950	+		IAI47_11575	0.77	+1.8
2,453,951	-		IAI47_11575	0.77	-1.8
2,453,951	-		IAI47_11575	0.77	-0.5
2,453,951	-		IAI47_11575	0.77	+0.9
2,453,951	-		IAI47_11575	0.77	-0.2
2,453,951	-		IAI47_11575	0.77	+0.2
2,453,951	-		IAI47_11575	0.77	+1.2
2,453,951	-		IAI47_11575	0.77	+0.9
2,453,951	-		IAI47_11575	0.77	+1.1
2,453,951	-		IAI47_11575	0.77	-1.6
2,454,035	+		IAI47_11575	0.83	-1.7
2,454,035	+		IAI47_11575	0.83	+2.7
2,454,035	+		IAI47_11575	0.83	+1.5
2,454,035	+		IAI47_11575	0.83	-1.8
2,454,036	-		IAI47_11575	0.83	+1.9
2,454,036	-		IAI47_11575	0.83	-2.5
2,454,095	+		IAI47_11575	0.87	+0.4
2,454,132	-		IAI47_11575	0.89	+0.7
2,454,293	+				+0.6
2,454,312	-				-0.7
2,454,312	-				+0.8
2,454,315	+				+0.7
2,454,315	+				-0.5
2,454,316	-				-1.0
2,454,316	-				-1.0
2,454,322	+				+1.0
2,454,323	-				-1.0
2,454,411	+				+0.4
2,454,411	+				-0.7
2,454,411	+				+3.4
2,454,412	-				-2.0
2,454,412	-				+0.5
2,454,412	-				+0.1
2,454,412	-				+1.7
2,454,441	-				+0.3
2,454,486	-				-0.2
2,454,622	+		IAI47_11580	0.12	-2.6
2,454,622	+		IAI47_11580	0.12	+1.6
2,454,622	+		IAI47_11580	0.12	+0.1
2,454,623	-		IAI47_11580	0.12	-0.2
2,454,623	-		IAI47_11580	0.12	-0.8
2,454,833	+		IAI47_11580	0.20	-1.0
2,454,834	-		IAI47_11580	0.20	+3.5
2,454,834	-		IAI47_11580	0.20	-0.9
2,455,051	+		IAI47_11580	0.28	-0.8
2,455,052	-		IAI47_11580	0.28	+0.2
2,455,115	+		IAI47_11580	0.30	+0.8
2,455,115	+		IAI47_11580	0.30	+0.8
2,455,115	+		IAI47_11580	0.30	+1.7
2,455,116	-		IAI47_11580	0.30	-0.4
2,455,116	-		IAI47_11580	0.30	+0.7
2,455,116	-		IAI47_11580	0.30	+1.6
2,455,116	-		IAI47_11580	0.30	+2.3
2,455,116	-		IAI47_11580	0.30	+0.7
2,455,160	+		IAI47_11580	0.32	+2.6
2,455,160	+		IAI47_11580	0.32	+1.3
2,455,160	+		IAI47_11580	0.32	+1.2
2,455,283	+		IAI47_11580	0.37	+0.4
2,455,283	+		IAI47_11580	0.37	-1.3
2,455,284	-		IAI47_11580	0.37	-0.5
2,455,682	+		IAI47_11580	0.52	+0.4
2,455,683	-		IAI47_11580	0.52	-0.6
2,455,729	+		IAI47_11580	0.54	-0.8
2,455,729	+		IAI47_11580	0.54	-1.6
2,455,730	-		IAI47_11580	0.54	+1.6
2,455,741	-		IAI47_11580	0.54	-0.6
2,455,741	-		IAI47_11580	0.54	+1.1
2,455,903	+		IAI47_11580	0.61	+2.2
2,455,904	-		IAI47_11580	0.61	+0.6
2,455,912	+		IAI47_11580	0.61	-0.9
2,455,913	-		IAI47_11580	0.61	-0.7
2,456,082	+		IAI47_11580	0.67	-0.2
2,456,083	-		IAI47_11580	0.68	+1.3
2,456,202	-		IAI47_11580	0.72	+0.9
2,456,377	+		IAI47_11580	0.79	-0.7
2,456,377	+		IAI47_11580	0.79	-0.0
2,456,377	+		IAI47_11580	0.79	-0.7
2,456,377	+		IAI47_11580	0.79	-1.4
2,456,378	-		IAI47_11580	0.79	+0.9
2,456,378	-		IAI47_11580	0.79	+0.4
2,456,465	+		IAI47_11580	0.82	+1.3
2,456,466	-		IAI47_11580	0.82	+2.2
2,456,466	-		IAI47_11580	0.82	+0.6
2,456,472	+		IAI47_11580	0.82	+0.6
2,456,473	-		IAI47_11580	0.82	-1.4
2,456,570	+		IAI47_11580	0.86	+0.3
2,456,570	+		IAI47_11580	0.86	+0.7
2,456,570	+		IAI47_11580	0.86	+2.0
2,456,571	-		IAI47_11580	0.86	+1.8
2,456,571	-		IAI47_11580	0.86	-1.6
2,456,611	+		IAI47_11580	0.88	+1.7
2,456,611	+		IAI47_11580	0.88	+2.5
2,456,612	-		IAI47_11580	0.88	+1.5
2,456,612	-		IAI47_11580	0.88	+1.5
2,456,626	+		IAI47_11580	0.88	+2.1
2,456,626	+		IAI47_11580	0.88	+1.4
2,456,627	-		IAI47_11580	0.88	+1.1
2,456,627	-		IAI47_11580	0.88	+1.0
2,456,657	+		IAI47_11580	0.90	+1.5
2,456,658	-		IAI47_11580	0.90	+0.1
2,456,772	+				+1.4
2,456,772	+				+2.2
2,456,772	+				+3.7
2,456,772	+				-0.4
2,456,772	+				+0.1
2,456,772	+				+0.6
2,456,772	+				+0.8
2,456,773	-				+0.5
2,456,773	-				+0.7
2,456,827	+				-1.5
2,456,827	+				+0.0
2,456,827	+				+0.5
2,456,827	+				+3.1
2,456,827	+				+0.3
2,456,827	+				-0.4
2,456,828	-				+2.5
2,456,828	-				-1.8
2,456,828	-				+1.7
2,456,828	-				-1.1
2,456,828	-				-1.3
2,456,828	-				+0.6
2,456,876	+				-1.0
2,456,876	+				+1.3
2,456,877	-				+0.2
2,456,880	+				+0.5
2,456,880	+				+1.3
2,456,880	+				+2.3
2,456,881	-				+0.8
2,456,881	-				+2.0
2,456,881	-				+0.5
2,456,881	-				-0.5
2,456,888	+				-2.6
2,456,905	-				+0.8
2,456,930	+				+0.4
2,456,930	+				-1.6
2,456,930	+				+0.5
2,456,931	-				-0.2
2,456,931	-				-2.8
2,456,931	-				+1.6
2,456,931	-				+1.1
2,456,931	-				+0.5
2,456,965	+				+1.1
2,456,966	-				-1.5
2,457,065	-				+0.1
2,457,157	+		IAI47_11585	0.16	-1.8
2,457,157	+		IAI47_11585	0.16	-0.8
2,457,158	-		IAI47_11585	0.17	-0.7
2,457,158	-		IAI47_11585	0.17	-0.5
2,457,158	-		IAI47_11585	0.17	+0.5
2,457,158	-		IAI47_11585	0.17	+1.1
2,457,158	-		IAI47_11585	0.17	-0.5
2,457,217	+		IAI47_11585	0.22	-0.0
2,457,218	-		IAI47_11585	0.22	+2.0
2,457,218	-		IAI47_11585	0.22	+1.1
2,457,274	-		IAI47_11585	0.28	+0.4
2,457,274	-		IAI47_11585	0.28	-1.9
2,457,274	-		IAI47_11585	0.28	+0.2
2,457,406	+		IAI47_11585	0.40	+1.4
2,457,407	-		IAI47_11585	0.40	+1.1
2,457,407	-		IAI47_11585	0.40	+0.0
2,457,548	-		IAI47_11585	0.54	-1.5
2,457,548	-		IAI47_11585	0.54	+1.4
2,457,548	-		IAI47_11585	0.54	-0.2
2,457,548	-		IAI47_11585	0.54	-0.5
2,457,548	-		IAI47_11585	0.54	+0.6
2,457,616	+		IAI47_11585	0.60	+1.4
2,457,616	+		IAI47_11585	0.60	+0.4
2,457,617	-		IAI47_11585	0.60	+1.5
2,457,617	-		IAI47_11585	0.60	+1.3
2,457,617	-		IAI47_11585	0.60	-1.5
2,457,703	+		IAI47_11585	0.69	+0.3
2,457,703	+		IAI47_11585	0.69	-0.7
2,457,703	+		IAI47_11585	0.69	+0.5
2,457,703	+		IAI47_11585	0.69	+1.7
2,457,704	-		IAI47_11585	0.69	-0.3
2,457,757	+		IAI47_11585	0.74	-0.1
2,457,757	+		IAI47_11585	0.74	+1.3
2,457,758	-		IAI47_11585	0.74	-1.3
2,457,758	-		IAI47_11585	0.74	-1.6
2,457,852	+		IAI47_11585	0.83	+1.5