Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3900

Experiment: LB 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3899 and Ga0059261_3900 are separated by 155 nucleotidesGa0059261_3900 and Ga0059261_3901 are separated by 210 nucleotides Ga0059261_3899: Ga0059261_3899 - Alanine dehydrogenase (EC 1.4.1.1) (from data), at 4,010,308 to 4,011,414 _3899 Ga0059261_3900: Ga0059261_3900 - Transcriptional regulators, at 4,011,570 to 4,012,043 _3900 Ga0059261_3901: Ga0059261_3901 - K+ transporter, at 4,012,254 to 4,014,122 _3901 Position (kb) 4011 4012 4013Strain fitness (log2 ratio) -2 -1 0 1at 4010.759 kb on + strand, within Ga0059261_3899at 4010.760 kb on - strand, within Ga0059261_3899at 4010.825 kb on + strand, within Ga0059261_3899at 4010.825 kb on + strand, within Ga0059261_3899at 4010.825 kb on + strand, within Ga0059261_3899at 4010.825 kb on + strand, within Ga0059261_3899at 4010.825 kb on + strand, within Ga0059261_3899at 4010.825 kb on + strand, within Ga0059261_3899at 4010.825 kb on + strand, within Ga0059261_3899at 4010.825 kb on + strand, within Ga0059261_3899at 4010.825 kb on + strand, within Ga0059261_3899at 4010.825 kb on + strand, within Ga0059261_3899at 4010.826 kb on - strand, within Ga0059261_3899at 4010.826 kb on - strand, within Ga0059261_3899at 4010.826 kb on - strand, within Ga0059261_3899at 4010.826 kb on - strand, within Ga0059261_3899at 4010.826 kb on - strand, within Ga0059261_3899at 4010.826 kb on - strand, within Ga0059261_3899at 4010.826 kb on - strand, within Ga0059261_3899at 4010.826 kb on - strand, within Ga0059261_3899at 4010.826 kb on - strand, within Ga0059261_3899at 4010.826 kb on - strand, within Ga0059261_3899at 4010.972 kb on + strand, within Ga0059261_3899at 4010.972 kb on + strand, within Ga0059261_3899at 4010.972 kb on + strand, within Ga0059261_3899at 4010.972 kb on + strand, within Ga0059261_3899at 4010.972 kb on + strand, within Ga0059261_3899at 4010.973 kb on - strand, within Ga0059261_3899at 4010.973 kb on - strand, within Ga0059261_3899at 4011.065 kb on + strand, within Ga0059261_3899at 4011.065 kb on + strand, within Ga0059261_3899at 4011.066 kb on - strand, within Ga0059261_3899at 4011.134 kb on + strand, within Ga0059261_3899at 4011.134 kb on + strand, within Ga0059261_3899at 4011.134 kb on + strand, within Ga0059261_3899at 4011.134 kb on + strand, within Ga0059261_3899at 4011.135 kb on - strand, within Ga0059261_3899at 4011.135 kb on - strand, within Ga0059261_3899at 4011.266 kb on + strand, within Ga0059261_3899at 4011.266 kb on + strand, within Ga0059261_3899at 4011.266 kb on + strand, within Ga0059261_3899at 4011.266 kb on + strand, within Ga0059261_3899at 4011.266 kb on + strand, within Ga0059261_3899at 4011.267 kb on - strand, within Ga0059261_3899at 4011.267 kb on - strand, within Ga0059261_3899at 4011.374 kb on + strandat 4011.374 kb on + strandat 4011.468 kb on - strandat 4011.502 kb on - strandat 4011.552 kb on - strandat 4011.707 kb on + strand, within Ga0059261_3900at 4011.717 kb on + strand, within Ga0059261_3900at 4011.750 kb on + strand, within Ga0059261_3900at 4011.750 kb on + strand, within Ga0059261_3900at 4011.750 kb on + strand, within Ga0059261_3900at 4011.752 kb on + strand, within Ga0059261_3900at 4011.752 kb on + strand, within Ga0059261_3900at 4011.752 kb on + strand, within Ga0059261_3900at 4011.752 kb on + strand, within Ga0059261_3900at 4011.753 kb on - strand, within Ga0059261_3900at 4011.753 kb on - strand, within Ga0059261_3900at 4011.879 kb on + strand, within Ga0059261_3900at 4011.880 kb on - strand, within Ga0059261_3900at 4011.892 kb on + strand, within Ga0059261_3900at 4011.892 kb on + strand, within Ga0059261_3900at 4011.892 kb on + strand, within Ga0059261_3900at 4011.892 kb on + strand, within Ga0059261_3900at 4011.892 kb on + strand, within Ga0059261_3900at 4011.893 kb on - strand, within Ga0059261_3900at 4011.893 kb on - strand, within Ga0059261_3900at 4011.893 kb on - strand, within Ga0059261_3900at 4011.916 kb on - strand, within Ga0059261_3900at 4012.041 kb on + strandat 4012.107 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 30C
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4,010,759 + Ga0059261_3899 0.41 -0.4
4,010,760 - Ga0059261_3899 0.41 -0.6
4,010,825 + Ga0059261_3899 0.47 +0.1
4,010,825 + Ga0059261_3899 0.47 +0.3
4,010,825 + Ga0059261_3899 0.47 +0.7
4,010,825 + Ga0059261_3899 0.47 +0.7
4,010,825 + Ga0059261_3899 0.47 -1.5
4,010,825 + Ga0059261_3899 0.47 -0.9
4,010,825 + Ga0059261_3899 0.47 -0.7
4,010,825 + Ga0059261_3899 0.47 +0.1
4,010,825 + Ga0059261_3899 0.47 -0.4
4,010,825 + Ga0059261_3899 0.47 +0.6
4,010,826 - Ga0059261_3899 0.47 +0.1
4,010,826 - Ga0059261_3899 0.47 -0.4
4,010,826 - Ga0059261_3899 0.47 -1.4
4,010,826 - Ga0059261_3899 0.47 -0.1
4,010,826 - Ga0059261_3899 0.47 -0.1
4,010,826 - Ga0059261_3899 0.47 -0.6
4,010,826 - Ga0059261_3899 0.47 -0.4
4,010,826 - Ga0059261_3899 0.47 -1.4
4,010,826 - Ga0059261_3899 0.47 -1.0
4,010,826 - Ga0059261_3899 0.47 +1.1
4,010,972 + Ga0059261_3899 0.60 -0.1
4,010,972 + Ga0059261_3899 0.60 +0.0
4,010,972 + Ga0059261_3899 0.60 +0.7
4,010,972 + Ga0059261_3899 0.60 -0.6
4,010,972 + Ga0059261_3899 0.60 +0.2
4,010,973 - Ga0059261_3899 0.60 +0.8
4,010,973 - Ga0059261_3899 0.60 -0.5
4,011,065 + Ga0059261_3899 0.68 -1.3
4,011,065 + Ga0059261_3899 0.68 +0.6
4,011,066 - Ga0059261_3899 0.68 +0.5
4,011,134 + Ga0059261_3899 0.75 +0.5
4,011,134 + Ga0059261_3899 0.75 +0.3
4,011,134 + Ga0059261_3899 0.75 -0.1
4,011,134 + Ga0059261_3899 0.75 -0.2
4,011,135 - Ga0059261_3899 0.75 +0.4
4,011,135 - Ga0059261_3899 0.75 +0.3
4,011,266 + Ga0059261_3899 0.87 -0.2
4,011,266 + Ga0059261_3899 0.87 +0.2
4,011,266 + Ga0059261_3899 0.87 -0.9
4,011,266 + Ga0059261_3899 0.87 -0.5
4,011,266 + Ga0059261_3899 0.87 +0.5
4,011,267 - Ga0059261_3899 0.87 +0.3
4,011,267 - Ga0059261_3899 0.87 +0.1
4,011,374 + -0.8
4,011,374 + +0.1
4,011,468 - -0.1
4,011,502 - +0.6
4,011,552 - -0.0
4,011,707 + Ga0059261_3900 0.29 +0.1
4,011,717 + Ga0059261_3900 0.31 -0.3
4,011,750 + Ga0059261_3900 0.38 -1.2
4,011,750 + Ga0059261_3900 0.38 -0.4
4,011,750 + Ga0059261_3900 0.38 -2.2
4,011,752 + Ga0059261_3900 0.38 +0.5
4,011,752 + Ga0059261_3900 0.38 -1.4
4,011,752 + Ga0059261_3900 0.38 +0.6
4,011,752 + Ga0059261_3900 0.38 -1.3
4,011,753 - Ga0059261_3900 0.39 -0.4
4,011,753 - Ga0059261_3900 0.39 -0.1
4,011,879 + Ga0059261_3900 0.65 -0.9
4,011,880 - Ga0059261_3900 0.65 -0.2
4,011,892 + Ga0059261_3900 0.68 -0.4
4,011,892 + Ga0059261_3900 0.68 -1.0
4,011,892 + Ga0059261_3900 0.68 -0.0
4,011,892 + Ga0059261_3900 0.68 -0.4
4,011,892 + Ga0059261_3900 0.68 +0.3
4,011,893 - Ga0059261_3900 0.68 -0.1
4,011,893 - Ga0059261_3900 0.68 -0.6
4,011,893 - Ga0059261_3900 0.68 -1.2
4,011,916 - Ga0059261_3900 0.73 +0.9
4,012,041 + -1.1
4,012,107 + -0.6

Or see this region's nucleotide sequence