Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18340

Experiment: LB_0.5%bileacids_aerobic_120MIN_ZN11B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18330 and CSW01_18335 are separated by 37 nucleotidesCSW01_18335 and CSW01_18340 are separated by 137 nucleotidesCSW01_18340 and CSW01_18345 are separated by 154 nucleotides CSW01_18330: CSW01_18330 - drug/metabolite DMT transporter permease, at 778,268 to 779,254 _18330 CSW01_18335: CSW01_18335 - sugar O-acetyltransferase, at 779,292 to 779,870 _18335 CSW01_18340: CSW01_18340 - HlyC/CorC family transporter, at 780,008 to 781,321 _18340 CSW01_18345: CSW01_18345 - osmotically inducible protein OsmC, at 781,476 to 781,880 _18345 Position (kb) 780 781 782Strain fitness (log2 ratio) -2 -1 0 1 2at 779.008 kb on + strand, within CSW01_18330at 779.008 kb on + strand, within CSW01_18330at 779.079 kb on + strand, within CSW01_18330at 779.079 kb on + strand, within CSW01_18330at 779.085 kb on - strand, within CSW01_18330at 779.085 kb on - strand, within CSW01_18330at 779.176 kb on + strandat 779.188 kb on + strandat 779.236 kb on + strandat 779.237 kb on - strandat 779.244 kb on - strandat 779.271 kb on - strandat 779.318 kb on + strandat 779.326 kb on - strandat 779.350 kb on + strand, within CSW01_18335at 779.522 kb on + strand, within CSW01_18335at 779.522 kb on + strand, within CSW01_18335at 779.540 kb on - strand, within CSW01_18335at 779.623 kb on - strand, within CSW01_18335at 779.726 kb on + strand, within CSW01_18335at 779.729 kb on + strand, within CSW01_18335at 779.737 kb on - strand, within CSW01_18335at 779.737 kb on - strand, within CSW01_18335at 779.739 kb on - strand, within CSW01_18335at 779.808 kb on - strand, within CSW01_18335at 779.892 kb on + strandat 779.964 kb on - strandat 780.045 kb on - strandat 780.108 kb on + strandat 780.146 kb on - strand, within CSW01_18340at 780.148 kb on + strand, within CSW01_18340at 780.156 kb on - strand, within CSW01_18340at 780.238 kb on + strand, within CSW01_18340at 780.246 kb on - strand, within CSW01_18340at 780.304 kb on + strand, within CSW01_18340at 780.322 kb on - strand, within CSW01_18340at 780.415 kb on + strand, within CSW01_18340at 780.415 kb on + strand, within CSW01_18340at 780.434 kb on + strand, within CSW01_18340at 780.441 kb on - strand, within CSW01_18340at 780.533 kb on - strand, within CSW01_18340at 780.543 kb on + strand, within CSW01_18340at 780.544 kb on - strand, within CSW01_18340at 780.545 kb on - strand, within CSW01_18340at 780.551 kb on - strand, within CSW01_18340at 780.562 kb on + strand, within CSW01_18340at 780.570 kb on - strand, within CSW01_18340at 780.645 kb on - strand, within CSW01_18340at 780.697 kb on - strand, within CSW01_18340at 780.729 kb on + strand, within CSW01_18340at 780.729 kb on + strand, within CSW01_18340at 780.729 kb on + strand, within CSW01_18340at 780.729 kb on + strand, within CSW01_18340at 780.729 kb on + strand, within CSW01_18340at 780.737 kb on - strand, within CSW01_18340at 780.737 kb on - strand, within CSW01_18340at 780.737 kb on - strand, within CSW01_18340at 780.776 kb on + strand, within CSW01_18340at 780.781 kb on + strand, within CSW01_18340at 780.781 kb on + strand, within CSW01_18340at 780.794 kb on - strand, within CSW01_18340at 780.900 kb on + strand, within CSW01_18340at 780.994 kb on + strand, within CSW01_18340at 781.002 kb on - strand, within CSW01_18340at 781.002 kb on - strand, within CSW01_18340at 781.006 kb on + strand, within CSW01_18340at 781.059 kb on + strand, within CSW01_18340at 781.064 kb on + strand, within CSW01_18340at 781.064 kb on + strand, within CSW01_18340at 781.064 kb on + strand, within CSW01_18340at 781.067 kb on - strand, within CSW01_18340at 781.067 kb on - strand, within CSW01_18340at 781.067 kb on - strand, within CSW01_18340at 781.067 kb on - strand, within CSW01_18340at 781.072 kb on - strand, within CSW01_18340at 781.072 kb on - strand, within CSW01_18340at 781.418 kb on + strandat 781.442 kb on + strandat 781.473 kb on + strandat 781.516 kb on - strandat 781.516 kb on - strandat 781.650 kb on + strand, within CSW01_18345at 781.667 kb on - strand, within CSW01_18345at 781.679 kb on - strand, within CSW01_18345at 781.679 kb on - strand, within CSW01_18345at 781.689 kb on - strand, within CSW01_18345at 781.689 kb on - strand, within CSW01_18345at 781.740 kb on + strand, within CSW01_18345at 781.740 kb on + strand, within CSW01_18345at 781.740 kb on + strand, within CSW01_18345at 781.853 kb on + strandat 782.029 kb on + strandat 782.062 kb on + strandat 782.067 kb on + strandat 782.070 kb on - strandat 782.220 kb on - strandat 782.237 kb on + strandat 782.285 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_120MIN_ZN11B
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779,008 + CSW01_18330 0.75 +0.8
779,008 + CSW01_18330 0.75 -0.5
779,079 + CSW01_18330 0.82 -1.0
779,079 + CSW01_18330 0.82 -0.4
779,085 - CSW01_18330 0.83 -0.4
779,085 - CSW01_18330 0.83 -2.1
779,176 + +0.0
779,188 + +2.6
779,236 + -0.0
779,237 - -0.9
779,244 - -0.9
779,271 - +0.2
779,318 + +0.1
779,326 - -0.3
779,350 + CSW01_18335 0.10 +0.5
779,522 + CSW01_18335 0.40 -0.5
779,522 + CSW01_18335 0.40 -0.1
779,540 - CSW01_18335 0.43 +1.0
779,623 - CSW01_18335 0.57 +0.4
779,726 + CSW01_18335 0.75 +0.2
779,729 + CSW01_18335 0.75 +0.1
779,737 - CSW01_18335 0.77 +1.8
779,737 - CSW01_18335 0.77 -0.3
779,739 - CSW01_18335 0.77 +0.5
779,808 - CSW01_18335 0.89 +2.3
779,892 + -1.5
779,964 - -0.8
780,045 - +0.3
780,108 + +0.2
780,146 - CSW01_18340 0.11 -0.7
780,148 + CSW01_18340 0.11 -0.7
780,156 - CSW01_18340 0.11 -0.2
780,238 + CSW01_18340 0.18 -0.2
780,246 - CSW01_18340 0.18 -0.5
780,304 + CSW01_18340 0.23 -0.2
780,322 - CSW01_18340 0.24 -1.0
780,415 + CSW01_18340 0.31 +0.5
780,415 + CSW01_18340 0.31 -0.4
780,434 + CSW01_18340 0.32 +0.8
780,441 - CSW01_18340 0.33 -0.9
780,533 - CSW01_18340 0.40 +1.3
780,543 + CSW01_18340 0.41 -1.4
780,544 - CSW01_18340 0.41 -0.5
780,545 - CSW01_18340 0.41 -1.3
780,551 - CSW01_18340 0.41 -1.8
780,562 + CSW01_18340 0.42 -0.4
780,570 - CSW01_18340 0.43 +0.1
780,645 - CSW01_18340 0.48 +0.5
780,697 - CSW01_18340 0.52 -0.9
780,729 + CSW01_18340 0.55 +1.4
780,729 + CSW01_18340 0.55 -0.5
780,729 + CSW01_18340 0.55 -0.2
780,729 + CSW01_18340 0.55 +0.7
780,729 + CSW01_18340 0.55 +1.0
780,737 - CSW01_18340 0.55 +0.1
780,737 - CSW01_18340 0.55 -0.7
780,737 - CSW01_18340 0.55 +2.6
780,776 + CSW01_18340 0.58 -0.4
780,781 + CSW01_18340 0.59 +0.4
780,781 + CSW01_18340 0.59 +0.1
780,794 - CSW01_18340 0.60 -0.0
780,900 + CSW01_18340 0.68 -0.8
780,994 + CSW01_18340 0.75 +0.1
781,002 - CSW01_18340 0.76 -0.3
781,002 - CSW01_18340 0.76 -0.6
781,006 + CSW01_18340 0.76 -0.4
781,059 + CSW01_18340 0.80 +0.5
781,064 + CSW01_18340 0.80 -0.6
781,064 + CSW01_18340 0.80 -1.7
781,064 + CSW01_18340 0.80 -0.3
781,067 - CSW01_18340 0.81 -0.4
781,067 - CSW01_18340 0.81 +0.3
781,067 - CSW01_18340 0.81 +0.4
781,067 - CSW01_18340 0.81 +0.4
781,072 - CSW01_18340 0.81 +0.5
781,072 - CSW01_18340 0.81 +0.7
781,418 + +0.6
781,442 + -0.2
781,473 + -0.4
781,516 - +0.4
781,516 - -0.0
781,650 + CSW01_18345 0.43 +0.2
781,667 - CSW01_18345 0.47 +0.1
781,679 - CSW01_18345 0.50 +1.0
781,679 - CSW01_18345 0.50 +0.0
781,689 - CSW01_18345 0.53 -0.5
781,689 - CSW01_18345 0.53 +0.2
781,740 + CSW01_18345 0.65 +1.2
781,740 + CSW01_18345 0.65 +0.2
781,740 + CSW01_18345 0.65 -0.2
781,853 + -0.2
782,029 + -0.2
782,062 + +1.4
782,067 + -0.7
782,070 - +0.4
782,220 - +0.4
782,237 + +1.0
782,285 - +0.2

Or see this region's nucleotide sequence