Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18280

Experiment: LB_0.5%bileacids_aerobic_120MIN_ZN11B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18275 and CSW01_18280 are separated by 23 nucleotidesCSW01_18280 and CSW01_18285 are separated by 700 nucleotides CSW01_18275: CSW01_18275 - diaminobutyrate--2-oxoglutarate transaminase, at 768,109 to 769,374 _18275 CSW01_18280: CSW01_18280 - L-2,4-diaminobutyric acid acetyltransferase, at 769,398 to 769,919 _18280 CSW01_18285: CSW01_18285 - 4a-hydroxytetrahydrobiopterin dehydratase, at 770,620 to 770,949 _18285 Position (kb) 769 770Strain fitness (log2 ratio) -2 -1 0 1 2at 768.542 kb on + strand, within CSW01_18275at 768.542 kb on + strand, within CSW01_18275at 768.542 kb on + strand, within CSW01_18275at 768.542 kb on + strand, within CSW01_18275at 768.542 kb on + strand, within CSW01_18275at 768.542 kb on + strand, within CSW01_18275at 768.542 kb on + strand, within CSW01_18275at 768.542 kb on + strand, within CSW01_18275at 768.542 kb on + strand, within CSW01_18275at 768.542 kb on + strand, within CSW01_18275at 768.550 kb on - strand, within CSW01_18275at 768.550 kb on - strand, within CSW01_18275at 768.550 kb on - strand, within CSW01_18275at 768.550 kb on - strand, within CSW01_18275at 768.550 kb on - strand, within CSW01_18275at 768.550 kb on - strand, within CSW01_18275at 768.550 kb on - strand, within CSW01_18275at 768.550 kb on - strand, within CSW01_18275at 768.550 kb on - strand, within CSW01_18275at 768.550 kb on - strand, within CSW01_18275at 768.555 kb on - strand, within CSW01_18275at 768.560 kb on - strand, within CSW01_18275at 768.560 kb on - strand, within CSW01_18275at 768.561 kb on - strand, within CSW01_18275at 768.568 kb on - strand, within CSW01_18275at 768.610 kb on - strand, within CSW01_18275at 768.663 kb on - strand, within CSW01_18275at 768.748 kb on + strand, within CSW01_18275at 768.771 kb on - strand, within CSW01_18275at 768.771 kb on - strand, within CSW01_18275at 768.778 kb on + strand, within CSW01_18275at 768.781 kb on - strand, within CSW01_18275at 768.867 kb on - strand, within CSW01_18275at 768.954 kb on + strand, within CSW01_18275at 768.990 kb on + strand, within CSW01_18275at 769.000 kb on + strand, within CSW01_18275at 769.021 kb on + strand, within CSW01_18275at 769.092 kb on + strand, within CSW01_18275at 769.092 kb on + strand, within CSW01_18275at 769.092 kb on + strand, within CSW01_18275at 769.092 kb on + strand, within CSW01_18275at 769.092 kb on + strand, within CSW01_18275at 769.092 kb on + strand, within CSW01_18275at 769.100 kb on - strand, within CSW01_18275at 769.100 kb on - strand, within CSW01_18275at 769.100 kb on - strand, within CSW01_18275at 769.100 kb on - strand, within CSW01_18275at 769.100 kb on - strand, within CSW01_18275at 769.211 kb on + strand, within CSW01_18275at 769.219 kb on - strand, within CSW01_18275at 769.219 kb on - strand, within CSW01_18275at 769.302 kb on - strandat 769.331 kb on + strandat 769.399 kb on - strandat 769.513 kb on - strand, within CSW01_18280at 769.518 kb on - strand, within CSW01_18280at 769.553 kb on + strand, within CSW01_18280at 769.561 kb on - strand, within CSW01_18280at 769.626 kb on + strand, within CSW01_18280at 769.626 kb on + strand, within CSW01_18280at 769.626 kb on + strand, within CSW01_18280at 769.633 kb on + strand, within CSW01_18280at 769.633 kb on + strand, within CSW01_18280at 769.634 kb on - strand, within CSW01_18280at 769.658 kb on - strand, within CSW01_18280at 769.876 kb on + strandat 769.876 kb on + strandat 769.894 kb on - strandat 770.191 kb on + strandat 770.312 kb on - strandat 770.598 kb on + strandat 770.789 kb on + strand, within CSW01_18285at 770.834 kb on - strand, within CSW01_18285at 770.910 kb on + strand, within CSW01_18285at 770.910 kb on + strand, within CSW01_18285at 770.910 kb on + strand, within CSW01_18285at 770.910 kb on + strand, within CSW01_18285

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_120MIN_ZN11B
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768,542 + CSW01_18275 0.34 -1.0
768,542 + CSW01_18275 0.34 -0.4
768,542 + CSW01_18275 0.34 +0.4
768,542 + CSW01_18275 0.34 +1.0
768,542 + CSW01_18275 0.34 +0.2
768,542 + CSW01_18275 0.34 +0.5
768,542 + CSW01_18275 0.34 +0.1
768,542 + CSW01_18275 0.34 -0.6
768,542 + CSW01_18275 0.34 -0.3
768,542 + CSW01_18275 0.34 +0.4
768,550 - CSW01_18275 0.35 +0.8
768,550 - CSW01_18275 0.35 -0.0
768,550 - CSW01_18275 0.35 -0.0
768,550 - CSW01_18275 0.35 +0.4
768,550 - CSW01_18275 0.35 +1.0
768,550 - CSW01_18275 0.35 +1.2
768,550 - CSW01_18275 0.35 +0.3
768,550 - CSW01_18275 0.35 +0.1
768,550 - CSW01_18275 0.35 -0.2
768,550 - CSW01_18275 0.35 -0.4
768,555 - CSW01_18275 0.35 -0.7
768,560 - CSW01_18275 0.36 +0.7
768,560 - CSW01_18275 0.36 +1.2
768,561 - CSW01_18275 0.36 +0.1
768,568 - CSW01_18275 0.36 -2.0
768,610 - CSW01_18275 0.40 -0.0
768,663 - CSW01_18275 0.44 +1.0
768,748 + CSW01_18275 0.50 -0.3
768,771 - CSW01_18275 0.52 -0.4
768,771 - CSW01_18275 0.52 -0.1
768,778 + CSW01_18275 0.53 -0.9
768,781 - CSW01_18275 0.53 -0.3
768,867 - CSW01_18275 0.60 +0.8
768,954 + CSW01_18275 0.67 -0.1
768,990 + CSW01_18275 0.70 +0.7
769,000 + CSW01_18275 0.70 +1.1
769,021 + CSW01_18275 0.72 -0.5
769,092 + CSW01_18275 0.78 +0.0
769,092 + CSW01_18275 0.78 +0.2
769,092 + CSW01_18275 0.78 +0.2
769,092 + CSW01_18275 0.78 +0.8
769,092 + CSW01_18275 0.78 -0.0
769,092 + CSW01_18275 0.78 -1.4
769,100 - CSW01_18275 0.78 -0.5
769,100 - CSW01_18275 0.78 +2.5
769,100 - CSW01_18275 0.78 +0.3
769,100 - CSW01_18275 0.78 +0.7
769,100 - CSW01_18275 0.78 -0.2
769,211 + CSW01_18275 0.87 +0.2
769,219 - CSW01_18275 0.88 +0.2
769,219 - CSW01_18275 0.88 +0.1
769,302 - -0.2
769,331 + +0.3
769,399 - +0.0
769,513 - CSW01_18280 0.22 -0.9
769,518 - CSW01_18280 0.23 -0.8
769,553 + CSW01_18280 0.30 -0.3
769,561 - CSW01_18280 0.31 -0.4
769,626 + CSW01_18280 0.44 +2.4
769,626 + CSW01_18280 0.44 -0.0
769,626 + CSW01_18280 0.44 -1.0
769,633 + CSW01_18280 0.45 -0.1
769,633 + CSW01_18280 0.45 -1.5
769,634 - CSW01_18280 0.45 -0.3
769,658 - CSW01_18280 0.50 +0.3
769,876 + +0.6
769,876 + +1.0
769,894 - -2.4
770,191 + +0.2
770,312 - +0.4
770,598 + -1.0
770,789 + CSW01_18285 0.51 -0.6
770,834 - CSW01_18285 0.65 +2.3
770,910 + CSW01_18285 0.88 +1.4
770,910 + CSW01_18285 0.88 +1.2
770,910 + CSW01_18285 0.88 -0.4
770,910 + CSW01_18285 0.88 +1.5

Or see this region's nucleotide sequence