Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18265

Experiment: LB_0.5%bileacids_aerobic_120MIN_ZN11B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18255 and CSW01_18260 are separated by 32 nucleotidesCSW01_18260 and CSW01_18265 are separated by 80 nucleotidesCSW01_18265 and CSW01_18270 overlap by 4 nucleotidesCSW01_18270 and CSW01_18275 are separated by 35 nucleotides CSW01_18255: CSW01_18255 - molecular chaperone GroEL, at 764,324 to 765,916 _18255 CSW01_18260: CSW01_18260 - hypothetical protein, at 765,949 to 766,155 _18260 CSW01_18265: CSW01_18265 - aspartate kinase, at 766,236 to 767,660 _18265 CSW01_18270: CSW01_18270 - L-ectoine synthase, at 767,657 to 768,073 _18270 CSW01_18275: CSW01_18275 - diaminobutyrate--2-oxoglutarate transaminase, at 768,109 to 769,374 _18275 Position (kb) 766 767 768Strain fitness (log2 ratio) -2 -1 0 1 2at 765.269 kb on + strand, within CSW01_18255at 765.320 kb on + strand, within CSW01_18255at 765.429 kb on + strand, within CSW01_18255at 765.436 kb on + strand, within CSW01_18255at 765.593 kb on + strand, within CSW01_18255at 765.635 kb on - strand, within CSW01_18255at 765.707 kb on + strand, within CSW01_18255at 765.715 kb on - strand, within CSW01_18255at 765.715 kb on - strand, within CSW01_18255at 765.830 kb on + strandat 765.830 kb on + strandat 765.830 kb on + strandat 765.830 kb on + strandat 765.830 kb on + strandat 765.830 kb on + strandat 765.830 kb on + strandat 765.838 kb on - strandat 765.838 kb on - strandat 765.838 kb on - strandat 765.847 kb on + strandat 765.925 kb on + strandat 765.925 kb on + strandat 765.933 kb on - strandat 765.941 kb on - strandat 765.993 kb on + strand, within CSW01_18260at 765.993 kb on + strand, within CSW01_18260at 766.001 kb on - strand, within CSW01_18260at 766.001 kb on - strand, within CSW01_18260at 766.001 kb on - strand, within CSW01_18260at 766.008 kb on + strand, within CSW01_18260at 766.014 kb on + strand, within CSW01_18260at 766.027 kb on + strand, within CSW01_18260at 766.049 kb on + strand, within CSW01_18260at 766.138 kb on + strandat 766.146 kb on - strandat 766.152 kb on - strandat 766.152 kb on - strandat 766.157 kb on - strandat 766.255 kb on + strandat 766.255 kb on + strandat 766.273 kb on - strandat 766.375 kb on + strandat 766.455 kb on + strand, within CSW01_18265at 766.550 kb on + strand, within CSW01_18265at 766.558 kb on - strand, within CSW01_18265at 766.558 kb on - strand, within CSW01_18265at 766.596 kb on + strand, within CSW01_18265at 766.630 kb on + strand, within CSW01_18265at 766.686 kb on + strand, within CSW01_18265at 766.700 kb on + strand, within CSW01_18265at 766.714 kb on + strand, within CSW01_18265at 766.719 kb on + strand, within CSW01_18265at 766.771 kb on - strand, within CSW01_18265at 766.839 kb on - strand, within CSW01_18265at 766.897 kb on - strand, within CSW01_18265at 766.938 kb on + strand, within CSW01_18265at 766.952 kb on - strand, within CSW01_18265at 766.973 kb on + strand, within CSW01_18265at 766.978 kb on + strand, within CSW01_18265at 766.986 kb on - strand, within CSW01_18265at 766.986 kb on - strand, within CSW01_18265at 767.037 kb on + strand, within CSW01_18265at 767.045 kb on - strand, within CSW01_18265at 767.202 kb on + strand, within CSW01_18265at 767.229 kb on - strand, within CSW01_18265at 767.234 kb on - strand, within CSW01_18265at 767.234 kb on - strand, within CSW01_18265at 767.259 kb on + strand, within CSW01_18265at 767.426 kb on + strand, within CSW01_18265at 767.426 kb on + strand, within CSW01_18265at 767.426 kb on + strand, within CSW01_18265at 767.426 kb on + strand, within CSW01_18265at 767.426 kb on + strand, within CSW01_18265at 767.426 kb on + strand, within CSW01_18265at 767.426 kb on + strand, within CSW01_18265at 767.426 kb on + strand, within CSW01_18265at 767.434 kb on - strand, within CSW01_18265at 767.434 kb on - strand, within CSW01_18265at 767.434 kb on - strand, within CSW01_18265at 767.434 kb on - strand, within CSW01_18265at 767.434 kb on - strand, within CSW01_18265at 767.434 kb on - strand, within CSW01_18265at 767.434 kb on - strand, within CSW01_18265at 767.434 kb on - strand, within CSW01_18265at 767.434 kb on - strand, within CSW01_18265at 767.434 kb on - strand, within CSW01_18265at 767.513 kb on + strand, within CSW01_18265at 767.573 kb on + strandat 767.573 kb on + strandat 767.603 kb on - strandat 767.647 kb on + strandat 767.655 kb on - strandat 767.655 kb on - strandat 767.655 kb on - strandat 767.689 kb on - strandat 767.694 kb on - strandat 767.704 kb on + strand, within CSW01_18270at 767.830 kb on - strand, within CSW01_18270at 767.843 kb on - strand, within CSW01_18270at 768.052 kb on + strandat 768.052 kb on + strandat 768.106 kb on - strandat 768.135 kb on + strandat 768.313 kb on + strand, within CSW01_18275at 768.377 kb on - strand, within CSW01_18275at 768.379 kb on - strand, within CSW01_18275at 768.383 kb on + strand, within CSW01_18275at 768.389 kb on + strand, within CSW01_18275at 768.542 kb on + strand, within CSW01_18275at 768.542 kb on + strand, within CSW01_18275at 768.542 kb on + strand, within CSW01_18275at 768.542 kb on + strand, within CSW01_18275at 768.542 kb on + strand, within CSW01_18275at 768.542 kb on + strand, within CSW01_18275at 768.542 kb on + strand, within CSW01_18275at 768.542 kb on + strand, within CSW01_18275at 768.542 kb on + strand, within CSW01_18275at 768.542 kb on + strand, within CSW01_18275at 768.550 kb on - strand, within CSW01_18275at 768.550 kb on - strand, within CSW01_18275at 768.550 kb on - strand, within CSW01_18275at 768.550 kb on - strand, within CSW01_18275at 768.550 kb on - strand, within CSW01_18275at 768.550 kb on - strand, within CSW01_18275at 768.550 kb on - strand, within CSW01_18275at 768.550 kb on - strand, within CSW01_18275at 768.550 kb on - strand, within CSW01_18275at 768.550 kb on - strand, within CSW01_18275at 768.555 kb on - strand, within CSW01_18275at 768.560 kb on - strand, within CSW01_18275at 768.560 kb on - strand, within CSW01_18275at 768.561 kb on - strand, within CSW01_18275at 768.568 kb on - strand, within CSW01_18275at 768.610 kb on - strand, within CSW01_18275

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_120MIN_ZN11B
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765,269 + CSW01_18255 0.59 -0.7
765,320 + CSW01_18255 0.63 -0.1
765,429 + CSW01_18255 0.69 -0.0
765,436 + CSW01_18255 0.70 -0.8
765,593 + CSW01_18255 0.80 +0.2
765,635 - CSW01_18255 0.82 +0.0
765,707 + CSW01_18255 0.87 -0.2
765,715 - CSW01_18255 0.87 +1.0
765,715 - CSW01_18255 0.87 +0.7
765,830 + +0.3
765,830 + +0.0
765,830 + +0.1
765,830 + +0.4
765,830 + +0.4
765,830 + +0.7
765,830 + -0.5
765,838 - +0.5
765,838 - +0.7
765,838 - -0.0
765,847 + -0.0
765,925 + -0.0
765,925 + +2.0
765,933 - -0.0
765,941 - -0.2
765,993 + CSW01_18260 0.21 +0.2
765,993 + CSW01_18260 0.21 -0.4
766,001 - CSW01_18260 0.25 +0.5
766,001 - CSW01_18260 0.25 +0.6
766,001 - CSW01_18260 0.25 +1.4
766,008 + CSW01_18260 0.29 -1.0
766,014 + CSW01_18260 0.31 -0.7
766,027 + CSW01_18260 0.38 -0.0
766,049 + CSW01_18260 0.48 -0.7
766,138 + +0.1
766,146 - +0.4
766,152 - +0.7
766,152 - +0.5
766,157 - +0.6
766,255 + -1.4
766,255 + +0.9
766,273 - +0.5
766,375 + +1.2
766,455 + CSW01_18265 0.15 -0.5
766,550 + CSW01_18265 0.22 +0.6
766,558 - CSW01_18265 0.23 -0.5
766,558 - CSW01_18265 0.23 -0.4
766,596 + CSW01_18265 0.25 +0.7
766,630 + CSW01_18265 0.28 -0.0
766,686 + CSW01_18265 0.32 +0.0
766,700 + CSW01_18265 0.33 +0.3
766,714 + CSW01_18265 0.34 +0.1
766,719 + CSW01_18265 0.34 -0.2
766,771 - CSW01_18265 0.38 +0.1
766,839 - CSW01_18265 0.42 -0.1
766,897 - CSW01_18265 0.46 -0.4
766,938 + CSW01_18265 0.49 -0.9
766,952 - CSW01_18265 0.50 +0.5
766,973 + CSW01_18265 0.52 +1.0
766,978 + CSW01_18265 0.52 +1.0
766,986 - CSW01_18265 0.53 -1.2
766,986 - CSW01_18265 0.53 +0.1
767,037 + CSW01_18265 0.56 -0.4
767,045 - CSW01_18265 0.57 +0.7
767,202 + CSW01_18265 0.68 +0.8
767,229 - CSW01_18265 0.70 -0.4
767,234 - CSW01_18265 0.70 -0.1
767,234 - CSW01_18265 0.70 -0.8
767,259 + CSW01_18265 0.72 +0.5
767,426 + CSW01_18265 0.84 -0.7
767,426 + CSW01_18265 0.84 -0.8
767,426 + CSW01_18265 0.84 -1.2
767,426 + CSW01_18265 0.84 +0.2
767,426 + CSW01_18265 0.84 +1.0
767,426 + CSW01_18265 0.84 +0.2
767,426 + CSW01_18265 0.84 +0.1
767,426 + CSW01_18265 0.84 -0.6
767,434 - CSW01_18265 0.84 -1.0
767,434 - CSW01_18265 0.84 -0.2
767,434 - CSW01_18265 0.84 -0.1
767,434 - CSW01_18265 0.84 -0.3
767,434 - CSW01_18265 0.84 -0.6
767,434 - CSW01_18265 0.84 -1.0
767,434 - CSW01_18265 0.84 -0.4
767,434 - CSW01_18265 0.84 +0.2
767,434 - CSW01_18265 0.84 -0.4
767,434 - CSW01_18265 0.84 -0.5
767,513 + CSW01_18265 0.90 +0.1
767,573 + +1.0
767,573 + -2.2
767,603 - -0.1
767,647 + +0.4
767,655 - -0.7
767,655 - -1.4
767,655 - -0.1
767,689 - -0.7
767,694 - +0.7
767,704 + CSW01_18270 0.11 +0.8
767,830 - CSW01_18270 0.41 -0.6
767,843 - CSW01_18270 0.45 +0.2
768,052 + +0.5
768,052 + -0.9
768,106 - -0.2
768,135 + -1.0
768,313 + CSW01_18275 0.16 -1.6
768,377 - CSW01_18275 0.21 -0.0
768,379 - CSW01_18275 0.21 +0.4
768,383 + CSW01_18275 0.22 -0.0
768,389 + CSW01_18275 0.22 -1.2
768,542 + CSW01_18275 0.34 -1.0
768,542 + CSW01_18275 0.34 -0.4
768,542 + CSW01_18275 0.34 +0.4
768,542 + CSW01_18275 0.34 +1.0
768,542 + CSW01_18275 0.34 +0.2
768,542 + CSW01_18275 0.34 +0.5
768,542 + CSW01_18275 0.34 +0.1
768,542 + CSW01_18275 0.34 -0.6
768,542 + CSW01_18275 0.34 -0.3
768,542 + CSW01_18275 0.34 +0.4
768,550 - CSW01_18275 0.35 +0.8
768,550 - CSW01_18275 0.35 -0.0
768,550 - CSW01_18275 0.35 -0.0
768,550 - CSW01_18275 0.35 +0.4
768,550 - CSW01_18275 0.35 +1.0
768,550 - CSW01_18275 0.35 +1.2
768,550 - CSW01_18275 0.35 +0.3
768,550 - CSW01_18275 0.35 +0.1
768,550 - CSW01_18275 0.35 -0.2
768,550 - CSW01_18275 0.35 -0.4
768,555 - CSW01_18275 0.35 -0.7
768,560 - CSW01_18275 0.36 +0.7
768,560 - CSW01_18275 0.36 +1.2
768,561 - CSW01_18275 0.36 +0.1
768,568 - CSW01_18275 0.36 -2.0
768,610 - CSW01_18275 0.40 -0.0

Or see this region's nucleotide sequence