Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17635

Experiment: LB_0.5%bileacids_aerobic_120MIN_ZN11B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17630 and CSW01_17635 are separated by 85 nucleotidesCSW01_17635 and CSW01_17640 are separated by 57 nucleotidesCSW01_17640 and CSW01_17645 are separated by 29 nucleotides CSW01_17630: CSW01_17630 - Fe(3+) ions import ATP-binding protein FbpC, at 622,934 to 623,989 _17630 CSW01_17635: CSW01_17635 - class I poly(R)-hydroxyalkanoic acid synthase, at 624,075 to 625,850 _17635 CSW01_17640: CSW01_17640 - phasin family protein, at 625,908 to 626,255 _17640 CSW01_17645: CSW01_17645 - acetyl-CoA C-acetyltransferase, at 626,285 to 627,490 _17645 Position (kb) 624 625 626Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 623.093 kb on + strand, within CSW01_17630at 623.133 kb on + strand, within CSW01_17630at 623.180 kb on + strand, within CSW01_17630at 623.188 kb on + strand, within CSW01_17630at 623.190 kb on + strand, within CSW01_17630at 623.196 kb on - strand, within CSW01_17630at 623.256 kb on - strand, within CSW01_17630at 623.262 kb on + strand, within CSW01_17630at 623.324 kb on - strand, within CSW01_17630at 623.364 kb on + strand, within CSW01_17630at 623.394 kb on + strand, within CSW01_17630at 623.577 kb on - strand, within CSW01_17630at 623.610 kb on - strand, within CSW01_17630at 623.638 kb on + strand, within CSW01_17630at 623.638 kb on + strand, within CSW01_17630at 623.646 kb on - strand, within CSW01_17630at 623.658 kb on - strand, within CSW01_17630at 623.748 kb on - strand, within CSW01_17630at 623.877 kb on + strand, within CSW01_17630at 623.896 kb on + strandat 623.904 kb on - strandat 623.911 kb on + strandat 623.920 kb on + strandat 623.928 kb on - strandat 623.937 kb on + strandat 623.945 kb on - strandat 623.987 kb on - strandat 623.987 kb on - strandat 623.996 kb on - strandat 624.056 kb on + strandat 624.099 kb on - strandat 624.121 kb on + strandat 624.124 kb on + strandat 624.124 kb on + strandat 624.126 kb on + strandat 624.126 kb on + strandat 624.126 kb on + strandat 624.172 kb on - strandat 624.182 kb on + strandat 624.182 kb on + strandat 624.182 kb on + strandat 624.182 kb on + strandat 624.182 kb on + strandat 624.227 kb on - strandat 624.227 kb on - strandat 624.234 kb on + strandat 624.281 kb on + strand, within CSW01_17635at 624.325 kb on - strand, within CSW01_17635at 624.343 kb on + strand, within CSW01_17635at 624.343 kb on + strand, within CSW01_17635at 624.351 kb on - strand, within CSW01_17635at 624.351 kb on - strand, within CSW01_17635at 624.361 kb on - strand, within CSW01_17635at 624.361 kb on - strand, within CSW01_17635at 624.475 kb on - strand, within CSW01_17635at 624.496 kb on + strand, within CSW01_17635at 624.504 kb on - strand, within CSW01_17635at 624.504 kb on - strand, within CSW01_17635at 624.504 kb on - strand, within CSW01_17635at 624.504 kb on - strand, within CSW01_17635at 624.654 kb on - strand, within CSW01_17635at 624.698 kb on - strand, within CSW01_17635at 624.712 kb on - strand, within CSW01_17635at 624.917 kb on - strand, within CSW01_17635at 625.001 kb on - strand, within CSW01_17635at 625.026 kb on + strand, within CSW01_17635at 625.034 kb on - strand, within CSW01_17635at 625.036 kb on + strand, within CSW01_17635at 625.048 kb on - strand, within CSW01_17635at 625.062 kb on - strand, within CSW01_17635at 625.155 kb on - strand, within CSW01_17635at 625.160 kb on - strand, within CSW01_17635at 625.231 kb on - strand, within CSW01_17635at 625.356 kb on + strand, within CSW01_17635at 625.366 kb on + strand, within CSW01_17635at 625.497 kb on - strand, within CSW01_17635at 625.553 kb on - strand, within CSW01_17635at 625.746 kb on - strandat 625.765 kb on + strandat 625.773 kb on + strandat 625.773 kb on - strandat 625.783 kb on - strandat 625.825 kb on - strandat 625.905 kb on + strandat 625.905 kb on + strandat 625.924 kb on + strandat 625.924 kb on + strandat 625.924 kb on + strandat 625.924 kb on + strandat 625.932 kb on - strandat 625.960 kb on + strand, within CSW01_17640at 626.042 kb on + strand, within CSW01_17640at 626.092 kb on + strand, within CSW01_17640at 626.092 kb on + strand, within CSW01_17640at 626.092 kb on + strand, within CSW01_17640at 626.100 kb on - strand, within CSW01_17640at 626.100 kb on - strand, within CSW01_17640at 626.125 kb on + strand, within CSW01_17640at 626.142 kb on - strand, within CSW01_17640at 626.201 kb on + strand, within CSW01_17640at 626.320 kb on - strandat 626.333 kb on + strandat 626.431 kb on - strand, within CSW01_17645at 626.431 kb on - strand, within CSW01_17645at 626.431 kb on - strand, within CSW01_17645at 626.431 kb on - strand, within CSW01_17645at 626.450 kb on - strand, within CSW01_17645at 626.450 kb on - strand, within CSW01_17645at 626.496 kb on + strand, within CSW01_17645at 626.629 kb on - strand, within CSW01_17645at 626.630 kb on - strand, within CSW01_17645at 626.684 kb on - strand, within CSW01_17645at 626.798 kb on + strand, within CSW01_17645at 626.806 kb on - strand, within CSW01_17645at 626.834 kb on + strand, within CSW01_17645at 626.844 kb on - strand, within CSW01_17645

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_120MIN_ZN11B
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623,093 + CSW01_17630 0.15 -0.1
623,133 + CSW01_17630 0.19 -1.1
623,180 + CSW01_17630 0.23 -2.7
623,188 + CSW01_17630 0.24 +0.1
623,190 + CSW01_17630 0.24 -1.0
623,196 - CSW01_17630 0.25 +0.7
623,256 - CSW01_17630 0.30 -0.5
623,262 + CSW01_17630 0.31 +0.8
623,324 - CSW01_17630 0.37 -2.3
623,364 + CSW01_17630 0.41 +0.6
623,394 + CSW01_17630 0.44 -0.1
623,577 - CSW01_17630 0.61 +0.1
623,610 - CSW01_17630 0.64 +0.1
623,638 + CSW01_17630 0.67 -0.9
623,638 + CSW01_17630 0.67 +1.2
623,646 - CSW01_17630 0.67 +0.9
623,658 - CSW01_17630 0.69 +0.2
623,748 - CSW01_17630 0.77 -0.5
623,877 + CSW01_17630 0.89 -1.4
623,896 + +0.0
623,904 - -0.5
623,911 + +0.0
623,920 + +0.6
623,928 - +1.3
623,937 + +0.3
623,945 - +0.1
623,987 - +0.9
623,987 - +1.0
623,996 - +0.0
624,056 + +0.8
624,099 - -0.1
624,121 + +0.2
624,124 + +0.5
624,124 + +0.9
624,126 + +0.1
624,126 + +1.9
624,126 + +0.2
624,172 - +0.7
624,182 + +0.5
624,182 + -0.5
624,182 + +0.9
624,182 + -0.8
624,182 + -0.7
624,227 - -0.8
624,227 - +0.8
624,234 + +0.4
624,281 + CSW01_17635 0.12 -0.4
624,325 - CSW01_17635 0.14 -0.0
624,343 + CSW01_17635 0.15 +0.3
624,343 + CSW01_17635 0.15 +0.8
624,351 - CSW01_17635 0.16 +0.4
624,351 - CSW01_17635 0.16 +0.1
624,361 - CSW01_17635 0.16 +0.5
624,361 - CSW01_17635 0.16 +0.9
624,475 - CSW01_17635 0.23 -0.1
624,496 + CSW01_17635 0.24 -0.0
624,504 - CSW01_17635 0.24 -0.6
624,504 - CSW01_17635 0.24 +0.0
624,504 - CSW01_17635 0.24 -0.5
624,504 - CSW01_17635 0.24 +1.4
624,654 - CSW01_17635 0.33 +1.0
624,698 - CSW01_17635 0.35 -0.9
624,712 - CSW01_17635 0.36 +0.4
624,917 - CSW01_17635 0.47 -0.2
625,001 - CSW01_17635 0.52 -0.4
625,026 + CSW01_17635 0.54 -0.2
625,034 - CSW01_17635 0.54 +0.5
625,036 + CSW01_17635 0.54 +0.3
625,048 - CSW01_17635 0.55 -0.2
625,062 - CSW01_17635 0.56 +0.3
625,155 - CSW01_17635 0.61 +0.2
625,160 - CSW01_17635 0.61 +1.2
625,231 - CSW01_17635 0.65 +0.1
625,356 + CSW01_17635 0.72 -0.1
625,366 + CSW01_17635 0.73 -0.1
625,497 - CSW01_17635 0.80 +0.7
625,553 - CSW01_17635 0.83 +0.6
625,746 - -0.7
625,765 + +0.6
625,773 + -0.6
625,773 - +0.1
625,783 - +0.1
625,825 - +0.6
625,905 + +0.0
625,905 + -0.0
625,924 + -0.5
625,924 + +0.4
625,924 + +1.3
625,924 + -1.1
625,932 - -1.7
625,960 + CSW01_17640 0.15 +1.2
626,042 + CSW01_17640 0.39 -1.1
626,092 + CSW01_17640 0.53 +0.2
626,092 + CSW01_17640 0.53 +1.5
626,092 + CSW01_17640 0.53 -0.2
626,100 - CSW01_17640 0.55 -0.0
626,100 - CSW01_17640 0.55 -0.7
626,125 + CSW01_17640 0.62 -1.2
626,142 - CSW01_17640 0.67 -0.3
626,201 + CSW01_17640 0.84 +0.0
626,320 - -0.0
626,333 + +0.2
626,431 - CSW01_17645 0.12 +0.9
626,431 - CSW01_17645 0.12 +0.5
626,431 - CSW01_17645 0.12 +0.9
626,431 - CSW01_17645 0.12 +1.4
626,450 - CSW01_17645 0.14 -0.1
626,450 - CSW01_17645 0.14 +0.2
626,496 + CSW01_17645 0.17 -0.1
626,629 - CSW01_17645 0.29 +0.5
626,630 - CSW01_17645 0.29 +0.3
626,684 - CSW01_17645 0.33 +0.3
626,798 + CSW01_17645 0.43 +0.4
626,806 - CSW01_17645 0.43 +3.9
626,834 + CSW01_17645 0.46 -0.2
626,844 - CSW01_17645 0.46 +0.0

Or see this region's nucleotide sequence