Experiment: LB_0.5%bileacids_aerobic_120MIN_ZN11B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17430 and CSW01_17435 are separated by 92 nucleotides CSW01_17435 and CSW01_17440 are separated by 115 nucleotides
CSW01_17430: CSW01_17430 - NADH oxidase, at 576,775 to 578,478
_17430
CSW01_17435: CSW01_17435 - VOC family protein, at 578,571 to 578,951
_17435
CSW01_17440: CSW01_17440 - hemolysin, at 579,067 to 580,812
_17440
Position (kb) 578
579 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 577.693 kb on + strand, within CSW01_17430 at 577.750 kb on + strand, within CSW01_17430 at 577.822 kb on - strand, within CSW01_17430 at 577.925 kb on - strand, within CSW01_17430 at 578.054 kb on + strand, within CSW01_17430 at 578.064 kb on + strand, within CSW01_17430 at 578.086 kb on - strand, within CSW01_17430 at 578.096 kb on + strand, within CSW01_17430 at 578.096 kb on + strand, within CSW01_17430 at 578.104 kb on - strand, within CSW01_17430 at 578.104 kb on - strand, within CSW01_17430 at 578.104 kb on - strand, within CSW01_17430 at 578.104 kb on - strand, within CSW01_17430 at 578.104 kb on - strand, within CSW01_17430 at 578.104 kb on - strand, within CSW01_17430 at 578.104 kb on - strand, within CSW01_17430 at 578.114 kb on - strand, within CSW01_17430 at 578.119 kb on + strand, within CSW01_17430 at 578.127 kb on - strand, within CSW01_17430 at 578.156 kb on + strand, within CSW01_17430 at 578.256 kb on - strand, within CSW01_17430 at 578.328 kb on - strand at 578.328 kb on - strand at 578.420 kb on + strand at 578.447 kb on - strand at 578.447 kb on - strand at 578.472 kb on + strand at 578.472 kb on + strand at 578.472 kb on + strand at 578.480 kb on - strand at 578.480 kb on - strand at 578.480 kb on - strand at 578.480 kb on - strand at 578.522 kb on - strand at 578.534 kb on - strand at 578.602 kb on + strand at 578.730 kb on - strand, within CSW01_17435 at 578.747 kb on - strand, within CSW01_17435 at 578.772 kb on - strand, within CSW01_17435 at 579.012 kb on + strand at 579.055 kb on + strand at 579.091 kb on - strand at 579.109 kb on + strand at 579.174 kb on - strand at 579.259 kb on + strand, within CSW01_17440 at 579.262 kb on - strand, within CSW01_17440 at 579.287 kb on - strand, within CSW01_17440 at 579.312 kb on - strand, within CSW01_17440 at 579.362 kb on + strand, within CSW01_17440 at 579.381 kb on - strand, within CSW01_17440 at 579.381 kb on - strand, within CSW01_17440 at 579.417 kb on - strand, within CSW01_17440 at 579.469 kb on - strand, within CSW01_17440 at 579.494 kb on + strand, within CSW01_17440 at 579.562 kb on - strand, within CSW01_17440 at 579.564 kb on + strand, within CSW01_17440 at 579.573 kb on + strand, within CSW01_17440 at 579.688 kb on + strand, within CSW01_17440 at 579.734 kb on - strand, within CSW01_17440 at 579.796 kb on + strand, within CSW01_17440 at 579.951 kb on - strand, within CSW01_17440
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_120MIN_ZN11B remove 577,693 + CSW01_17430 0.54 +0.8 577,750 + CSW01_17430 0.57 -0.3 577,822 - CSW01_17430 0.61 -0.3 577,925 - CSW01_17430 0.67 +1.1 578,054 + CSW01_17430 0.75 -2.9 578,064 + CSW01_17430 0.76 +0.2 578,086 - CSW01_17430 0.77 +0.0 578,096 + CSW01_17430 0.78 -0.5 578,096 + CSW01_17430 0.78 +0.9 578,104 - CSW01_17430 0.78 -1.3 578,104 - CSW01_17430 0.78 -0.1 578,104 - CSW01_17430 0.78 +0.1 578,104 - CSW01_17430 0.78 -0.4 578,104 - CSW01_17430 0.78 -0.4 578,104 - CSW01_17430 0.78 +1.1 578,104 - CSW01_17430 0.78 +0.9 578,114 - CSW01_17430 0.79 +0.4 578,119 + CSW01_17430 0.79 -0.1 578,127 - CSW01_17430 0.79 +0.9 578,156 + CSW01_17430 0.81 +0.2 578,256 - CSW01_17430 0.87 -1.4 578,328 - +0.3 578,328 - -0.5 578,420 + -0.3 578,447 - -0.5 578,447 - -0.7 578,472 + +0.3 578,472 + +0.2 578,472 + +0.6 578,480 - +0.3 578,480 - +0.1 578,480 - -1.4 578,480 - -0.4 578,522 - -0.2 578,534 - +1.3 578,602 + -0.1 578,730 - CSW01_17435 0.42 +0.9 578,747 - CSW01_17435 0.46 -0.5 578,772 - CSW01_17435 0.53 -1.1 579,012 + -1.1 579,055 + +1.1 579,091 - -0.2 579,109 + -1.1 579,174 - -0.5 579,259 + CSW01_17440 0.11 -0.0 579,262 - CSW01_17440 0.11 +0.6 579,287 - CSW01_17440 0.13 +0.4 579,312 - CSW01_17440 0.14 +0.0 579,362 + CSW01_17440 0.17 -0.1 579,381 - CSW01_17440 0.18 -1.1 579,381 - CSW01_17440 0.18 -1.5 579,417 - CSW01_17440 0.20 -0.1 579,469 - CSW01_17440 0.23 -0.1 579,494 + CSW01_17440 0.24 +0.4 579,562 - CSW01_17440 0.28 +0.0 579,564 + CSW01_17440 0.28 -0.1 579,573 + CSW01_17440 0.29 -0.1 579,688 + CSW01_17440 0.36 -0.6 579,734 - CSW01_17440 0.38 -0.3 579,796 + CSW01_17440 0.42 +1.9 579,951 - CSW01_17440 0.51 +0.1
Or see this region's nucleotide sequence