Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17195

Experiment: LB_0.5%bileacids_aerobic_120MIN_ZN11B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17185 and CSW01_17190 are separated by 195 nucleotidesCSW01_17190 and CSW01_17195 are separated by 53 nucleotidesCSW01_17195 and CSW01_17200 are separated by 239 nucleotidesCSW01_17200 and CSW01_17205 are separated by 81 nucleotides CSW01_17185: CSW01_17185 - ABC transporter substrate-binding protein, at 526,746 to 528,581 _17185 CSW01_17190: CSW01_17190 - DNA mismatch repair protein MutT, at 528,777 to 529,337 _17190 CSW01_17195: CSW01_17195 - exopolyphosphatase, at 529,391 to 530,323 _17195 CSW01_17200: CSW01_17200 - DUF333 domain-containing protein, at 530,563 to 530,814 _17200 CSW01_17205: CSW01_17205 - YdcF family protein, at 530,896 to 531,849 _17205 Position (kb) 529 530 531Strain fitness (log2 ratio) -2 -1 0 1 2at 528.556 kb on - strandat 528.566 kb on - strandat 528.566 kb on - strandat 528.666 kb on - strandat 528.801 kb on + strandat 528.828 kb on + strandat 528.828 kb on + strandat 528.828 kb on + strandat 528.848 kb on - strand, within CSW01_17190at 528.865 kb on - strand, within CSW01_17190at 528.865 kb on - strand, within CSW01_17190at 528.904 kb on + strand, within CSW01_17190at 528.913 kb on + strand, within CSW01_17190at 529.053 kb on + strand, within CSW01_17190at 529.055 kb on + strand, within CSW01_17190at 529.113 kb on + strand, within CSW01_17190at 529.177 kb on + strand, within CSW01_17190at 529.177 kb on + strand, within CSW01_17190at 529.177 kb on + strand, within CSW01_17190at 529.177 kb on + strand, within CSW01_17190at 529.177 kb on + strand, within CSW01_17190at 529.177 kb on + strand, within CSW01_17190at 529.177 kb on + strand, within CSW01_17190at 529.177 kb on + strand, within CSW01_17190at 529.185 kb on - strand, within CSW01_17190at 529.185 kb on - strand, within CSW01_17190at 529.185 kb on - strand, within CSW01_17190at 529.185 kb on - strand, within CSW01_17190at 529.185 kb on - strand, within CSW01_17190at 529.203 kb on + strand, within CSW01_17190at 529.225 kb on + strand, within CSW01_17190at 529.225 kb on + strand, within CSW01_17190at 529.225 kb on + strand, within CSW01_17190at 529.225 kb on + strand, within CSW01_17190at 529.225 kb on + strand, within CSW01_17190at 529.233 kb on - strand, within CSW01_17190at 529.233 kb on - strand, within CSW01_17190at 529.233 kb on - strand, within CSW01_17190at 529.233 kb on - strand, within CSW01_17190at 529.233 kb on - strand, within CSW01_17190at 529.318 kb on + strandat 529.318 kb on + strandat 529.326 kb on - strandat 529.326 kb on - strandat 529.336 kb on - strandat 529.401 kb on + strandat 529.415 kb on + strandat 529.479 kb on + strandat 529.497 kb on - strand, within CSW01_17195at 529.634 kb on + strand, within CSW01_17195at 529.702 kb on + strand, within CSW01_17195at 529.710 kb on - strand, within CSW01_17195at 529.710 kb on - strand, within CSW01_17195at 529.751 kb on + strand, within CSW01_17195at 529.756 kb on + strand, within CSW01_17195at 529.756 kb on + strand, within CSW01_17195at 529.759 kb on - strand, within CSW01_17195at 529.872 kb on + strand, within CSW01_17195at 529.881 kb on - strand, within CSW01_17195at 530.057 kb on - strand, within CSW01_17195at 530.161 kb on - strand, within CSW01_17195at 530.226 kb on - strand, within CSW01_17195at 530.250 kb on - strandat 530.260 kb on + strandat 530.260 kb on + strandat 530.268 kb on - strandat 530.268 kb on - strandat 530.332 kb on - strandat 530.349 kb on - strandat 530.371 kb on + strandat 530.588 kb on - strandat 530.596 kb on - strand, within CSW01_17200at 530.679 kb on + strand, within CSW01_17200at 530.687 kb on - strand, within CSW01_17200at 530.695 kb on - strand, within CSW01_17200at 530.897 kb on - strandat 530.953 kb on - strandat 530.966 kb on + strandat 531.024 kb on - strand, within CSW01_17205at 531.082 kb on + strand, within CSW01_17205at 531.125 kb on + strand, within CSW01_17205at 531.129 kb on + strand, within CSW01_17205at 531.152 kb on + strand, within CSW01_17205at 531.160 kb on - strand, within CSW01_17205at 531.259 kb on - strand, within CSW01_17205

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_120MIN_ZN11B
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528,556 - +0.0
528,566 - -0.1
528,566 - +0.8
528,666 - -0.1
528,801 + +0.0
528,828 + -0.3
528,828 + -0.9
528,828 + +0.2
528,848 - CSW01_17190 0.13 +0.2
528,865 - CSW01_17190 0.16 -1.8
528,865 - CSW01_17190 0.16 +0.3
528,904 + CSW01_17190 0.23 -0.0
528,913 + CSW01_17190 0.24 -0.0
529,053 + CSW01_17190 0.49 -0.5
529,055 + CSW01_17190 0.50 +0.2
529,113 + CSW01_17190 0.60 +0.5
529,177 + CSW01_17190 0.71 +0.4
529,177 + CSW01_17190 0.71 +0.8
529,177 + CSW01_17190 0.71 +0.4
529,177 + CSW01_17190 0.71 +0.4
529,177 + CSW01_17190 0.71 +0.5
529,177 + CSW01_17190 0.71 -0.3
529,177 + CSW01_17190 0.71 +0.8
529,177 + CSW01_17190 0.71 -0.3
529,185 - CSW01_17190 0.73 -0.1
529,185 - CSW01_17190 0.73 +0.9
529,185 - CSW01_17190 0.73 +1.2
529,185 - CSW01_17190 0.73 -0.6
529,185 - CSW01_17190 0.73 +0.3
529,203 + CSW01_17190 0.76 +0.3
529,225 + CSW01_17190 0.80 -0.0
529,225 + CSW01_17190 0.80 +0.1
529,225 + CSW01_17190 0.80 +0.7
529,225 + CSW01_17190 0.80 -1.6
529,225 + CSW01_17190 0.80 +0.1
529,233 - CSW01_17190 0.81 -0.3
529,233 - CSW01_17190 0.81 +0.5
529,233 - CSW01_17190 0.81 -0.6
529,233 - CSW01_17190 0.81 +1.2
529,233 - CSW01_17190 0.81 -0.4
529,318 + +0.2
529,318 + +1.0
529,326 - -0.3
529,326 - -0.3
529,336 - +0.6
529,401 + -0.2
529,415 + -1.3
529,479 + +1.8
529,497 - CSW01_17195 0.11 +0.2
529,634 + CSW01_17195 0.26 -0.0
529,702 + CSW01_17195 0.33 -0.9
529,710 - CSW01_17195 0.34 +0.4
529,710 - CSW01_17195 0.34 -0.2
529,751 + CSW01_17195 0.39 -0.9
529,756 + CSW01_17195 0.39 -0.0
529,756 + CSW01_17195 0.39 +2.0
529,759 - CSW01_17195 0.39 +0.8
529,872 + CSW01_17195 0.52 +0.7
529,881 - CSW01_17195 0.53 +0.7
530,057 - CSW01_17195 0.71 +0.3
530,161 - CSW01_17195 0.83 +0.2
530,226 - CSW01_17195 0.89 -0.1
530,250 - +0.7
530,260 + -0.1
530,260 + -0.4
530,268 - -0.0
530,268 - -0.0
530,332 - +0.1
530,349 - -0.6
530,371 + -1.2
530,588 - +2.0
530,596 - CSW01_17200 0.13 +0.2
530,679 + CSW01_17200 0.46 +0.2
530,687 - CSW01_17200 0.49 +0.5
530,695 - CSW01_17200 0.52 +0.2
530,897 - +0.3
530,953 - -0.7
530,966 + -0.1
531,024 - CSW01_17205 0.13 +0.3
531,082 + CSW01_17205 0.19 -0.8
531,125 + CSW01_17205 0.24 -0.1
531,129 + CSW01_17205 0.24 -0.1
531,152 + CSW01_17205 0.27 +1.0
531,160 - CSW01_17205 0.28 +1.1
531,259 - CSW01_17205 0.38 +0.3

Or see this region's nucleotide sequence