Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16935

Experiment: LB_0.5%bileacids_aerobic_120MIN_ZN11B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16925 and CSW01_16930 overlap by 4 nucleotidesCSW01_16930 and CSW01_16935 are separated by 107 nucleotidesCSW01_16935 and CSW01_16940 are separated by 216 nucleotides CSW01_16925: CSW01_16925 - cytochrome b, at 473,567 to 474,112 _16925 CSW01_16930: CSW01_16930 - YceI family protein, at 474,109 to 474,678 _16930 CSW01_16935: CSW01_16935 - formate transporter FocA, at 474,786 to 476,237 _16935 CSW01_16940: CSW01_16940 - LysR family transcriptional regulator, at 476,454 to 477,359 _16940 Position (kb) 474 475 476 477Strain fitness (log2 ratio) -1 0 1 2at 473.887 kb on - strand, within CSW01_16925at 473.910 kb on + strand, within CSW01_16925at 473.911 kb on - strand, within CSW01_16925at 473.918 kb on - strand, within CSW01_16925at 473.918 kb on - strand, within CSW01_16925at 473.918 kb on - strand, within CSW01_16925at 473.936 kb on - strand, within CSW01_16925at 474.002 kb on + strand, within CSW01_16925at 474.036 kb on - strand, within CSW01_16925at 474.047 kb on + strand, within CSW01_16925at 474.047 kb on + strand, within CSW01_16925at 474.344 kb on + strand, within CSW01_16930at 474.352 kb on - strand, within CSW01_16930at 474.432 kb on - strand, within CSW01_16930at 474.442 kb on - strand, within CSW01_16930at 474.481 kb on + strand, within CSW01_16930at 474.590 kb on + strand, within CSW01_16930at 474.590 kb on + strand, within CSW01_16930at 474.649 kb on + strandat 474.714 kb on - strandat 474.714 kb on - strandat 474.790 kb on + strandat 474.897 kb on + strandat 474.897 kb on + strandat 474.897 kb on + strandat 474.897 kb on + strandat 474.905 kb on - strandat 474.929 kb on + strandat 474.964 kb on + strand, within CSW01_16935at 475.218 kb on - strand, within CSW01_16935at 475.256 kb on + strand, within CSW01_16935at 475.276 kb on + strand, within CSW01_16935at 475.285 kb on - strand, within CSW01_16935at 475.374 kb on + strand, within CSW01_16935at 475.444 kb on + strand, within CSW01_16935at 475.523 kb on + strand, within CSW01_16935at 475.565 kb on - strand, within CSW01_16935at 475.607 kb on + strand, within CSW01_16935at 475.607 kb on + strand, within CSW01_16935at 475.615 kb on - strand, within CSW01_16935at 475.753 kb on - strand, within CSW01_16935at 475.770 kb on - strand, within CSW01_16935at 475.770 kb on - strand, within CSW01_16935at 475.780 kb on - strand, within CSW01_16935at 475.780 kb on - strand, within CSW01_16935at 475.825 kb on - strand, within CSW01_16935at 475.861 kb on + strand, within CSW01_16935at 475.944 kb on + strand, within CSW01_16935at 475.944 kb on + strand, within CSW01_16935at 475.957 kb on + strand, within CSW01_16935at 476.072 kb on - strand, within CSW01_16935at 476.152 kb on + strandat 476.160 kb on - strandat 476.198 kb on + strandat 476.280 kb on + strandat 476.288 kb on - strandat 476.319 kb on - strandat 476.319 kb on - strandat 476.327 kb on - strandat 476.445 kb on + strandat 476.534 kb on + strandat 476.571 kb on - strand, within CSW01_16940at 476.680 kb on + strand, within CSW01_16940at 476.688 kb on - strand, within CSW01_16940at 476.725 kb on - strand, within CSW01_16940at 476.725 kb on - strand, within CSW01_16940at 476.788 kb on + strand, within CSW01_16940at 476.788 kb on + strand, within CSW01_16940at 476.796 kb on - strand, within CSW01_16940at 476.860 kb on - strand, within CSW01_16940at 476.923 kb on + strand, within CSW01_16940at 476.938 kb on - strand, within CSW01_16940at 477.001 kb on + strand, within CSW01_16940at 477.001 kb on + strand, within CSW01_16940at 477.009 kb on - strand, within CSW01_16940at 477.028 kb on - strand, within CSW01_16940at 477.140 kb on - strand, within CSW01_16940

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_120MIN_ZN11B
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473,887 - CSW01_16925 0.59 +0.4
473,910 + CSW01_16925 0.63 +0.8
473,911 - CSW01_16925 0.63 -0.2
473,918 - CSW01_16925 0.64 +0.1
473,918 - CSW01_16925 0.64 -0.3
473,918 - CSW01_16925 0.64 +0.3
473,936 - CSW01_16925 0.68 +1.0
474,002 + CSW01_16925 0.80 -0.1
474,036 - CSW01_16925 0.86 -0.0
474,047 + CSW01_16925 0.88 +0.7
474,047 + CSW01_16925 0.88 +0.5
474,344 + CSW01_16930 0.41 -0.1
474,352 - CSW01_16930 0.43 +1.2
474,432 - CSW01_16930 0.57 +0.2
474,442 - CSW01_16930 0.58 +0.3
474,481 + CSW01_16930 0.65 -0.1
474,590 + CSW01_16930 0.84 -0.2
474,590 + CSW01_16930 0.84 -0.1
474,649 + +0.0
474,714 - +0.3
474,714 - +0.4
474,790 + +0.9
474,897 + +1.2
474,897 + +0.9
474,897 + +0.4
474,897 + -0.3
474,905 - +0.1
474,929 + +1.1
474,964 + CSW01_16935 0.12 -0.6
475,218 - CSW01_16935 0.30 -0.8
475,256 + CSW01_16935 0.32 +0.4
475,276 + CSW01_16935 0.34 +1.7
475,285 - CSW01_16935 0.34 +0.2
475,374 + CSW01_16935 0.40 +0.9
475,444 + CSW01_16935 0.45 +0.4
475,523 + CSW01_16935 0.51 -0.0
475,565 - CSW01_16935 0.54 +0.8
475,607 + CSW01_16935 0.57 +0.6
475,607 + CSW01_16935 0.57 +0.7
475,615 - CSW01_16935 0.57 -1.4
475,753 - CSW01_16935 0.67 +1.2
475,770 - CSW01_16935 0.68 +0.0
475,770 - CSW01_16935 0.68 +0.1
475,780 - CSW01_16935 0.68 +0.1
475,780 - CSW01_16935 0.68 -0.1
475,825 - CSW01_16935 0.72 -0.6
475,861 + CSW01_16935 0.74 -0.2
475,944 + CSW01_16935 0.80 +0.5
475,944 + CSW01_16935 0.80 +0.2
475,957 + CSW01_16935 0.81 -0.4
476,072 - CSW01_16935 0.89 +0.8
476,152 + +0.0
476,160 - +0.6
476,198 + +0.8
476,280 + +0.4
476,288 - -0.9
476,319 - -0.3
476,319 - -0.8
476,327 - +0.4
476,445 + +0.6
476,534 + +0.7
476,571 - CSW01_16940 0.13 -0.9
476,680 + CSW01_16940 0.25 +1.5
476,688 - CSW01_16940 0.26 +0.0
476,725 - CSW01_16940 0.30 +0.9
476,725 - CSW01_16940 0.30 +0.0
476,788 + CSW01_16940 0.37 -0.3
476,788 + CSW01_16940 0.37 -0.2
476,796 - CSW01_16940 0.38 +2.6
476,860 - CSW01_16940 0.45 -0.1
476,923 + CSW01_16940 0.52 -1.0
476,938 - CSW01_16940 0.53 +0.1
477,001 + CSW01_16940 0.60 +1.6
477,001 + CSW01_16940 0.60 +1.2
477,009 - CSW01_16940 0.61 +0.6
477,028 - CSW01_16940 0.63 +0.2
477,140 - CSW01_16940 0.76 +1.6

Or see this region's nucleotide sequence