Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15555

Experiment: LB_0.5%bileacids_aerobic_120MIN_ZN11B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15535 and CSW01_15540 are separated by 56 nucleotidesCSW01_15540 and CSW01_15545 overlap by 52 nucleotidesCSW01_15545 and CSW01_15550 overlap by 25 nucleotidesCSW01_15550 and CSW01_15555 are separated by 123 nucleotidesCSW01_15555 and CSW01_15560 are separated by 136 nucleotidesCSW01_15560 and CSW01_15565 are separated by 0 nucleotidesCSW01_15565 and CSW01_15570 are separated by 62 nucleotides CSW01_15535: CSW01_15535 - NUDIX hydrolase, at 321,688 to 322,074 _15535 CSW01_15540: CSW01_15540 - acetyltransferase, at 322,131 to 322,244 _15540 CSW01_15545: CSW01_15545 - DUF1289 domain-containing protein, at 322,193 to 322,474 _15545 CSW01_15550: CSW01_15550 - DUF1196 domain-containing protein, at 322,450 to 322,608 _15550 CSW01_15555: CSW01_15555 - N-acetyltransferase, at 322,732 to 323,268 _15555 CSW01_15560: CSW01_15560 - lipocalin, at 323,405 to 323,920 _15560 CSW01_15565: CSW01_15565 - hypothetical protein, at 323,921 to 324,007 _15565 CSW01_15570: CSW01_15570 - N-acetyltransferase, at 324,070 to 324,567 _15570 Position (kb) 322 323 324Strain fitness (log2 ratio) -1 0 1at 321.788 kb on + strand, within CSW01_15535at 321.788 kb on + strand, within CSW01_15535at 321.930 kb on - strand, within CSW01_15535at 321.949 kb on - strand, within CSW01_15535at 321.989 kb on + strand, within CSW01_15535at 323.632 kb on + strand, within CSW01_15560

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_120MIN_ZN11B
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321,788 + CSW01_15535 0.26 -0.2
321,788 + CSW01_15535 0.26 +0.1
321,930 - CSW01_15535 0.63 -0.3
321,949 - CSW01_15535 0.67 +0.2
321,989 + CSW01_15535 0.78 +0.3
323,632 + CSW01_15560 0.44 -0.2

Or see this region's nucleotide sequence