Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15295

Experiment: LB_0.5%bileacids_aerobic_120MIN_ZN11B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15290 and CSW01_15295 are separated by 15 nucleotidesCSW01_15295 and CSW01_15300 are separated by 164 nucleotides CSW01_15290: CSW01_15290 - methyl-accepting chemotaxis protein, at 284,591 to 286,522 _15290 CSW01_15295: CSW01_15295 - aspartate aminotransferase family protein, at 286,538 to 288,211 _15295 CSW01_15300: CSW01_15300 - D-alanyl-D-alanine carboxypeptidase, at 288,376 to 289,545 _15300 Position (kb) 286 287 288 289Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 285.572 kb on + strand, within CSW01_15290at 285.577 kb on + strand, within CSW01_15290at 285.580 kb on - strand, within CSW01_15290at 285.585 kb on - strand, within CSW01_15290at 285.587 kb on + strand, within CSW01_15290at 285.629 kb on + strand, within CSW01_15290at 285.644 kb on + strand, within CSW01_15290at 285.693 kb on - strand, within CSW01_15290at 285.718 kb on - strand, within CSW01_15290at 285.720 kb on + strand, within CSW01_15290at 285.720 kb on + strand, within CSW01_15290at 285.728 kb on - strand, within CSW01_15290at 285.829 kb on + strand, within CSW01_15290at 285.834 kb on + strand, within CSW01_15290at 286.058 kb on + strand, within CSW01_15290at 286.091 kb on + strand, within CSW01_15290at 286.138 kb on - strand, within CSW01_15290at 286.156 kb on + strand, within CSW01_15290at 286.156 kb on + strand, within CSW01_15290at 286.203 kb on + strand, within CSW01_15290at 286.210 kb on - strand, within CSW01_15290at 286.221 kb on + strand, within CSW01_15290at 286.229 kb on - strand, within CSW01_15290at 286.233 kb on + strand, within CSW01_15290at 286.233 kb on + strand, within CSW01_15290at 286.254 kb on - strand, within CSW01_15290at 286.269 kb on + strand, within CSW01_15290at 286.269 kb on + strand, within CSW01_15290at 286.277 kb on + strand, within CSW01_15290at 286.277 kb on + strand, within CSW01_15290at 286.285 kb on - strand, within CSW01_15290at 286.287 kb on + strand, within CSW01_15290at 286.295 kb on - strand, within CSW01_15290at 286.302 kb on + strand, within CSW01_15290at 286.310 kb on - strand, within CSW01_15290at 286.310 kb on - strand, within CSW01_15290at 286.317 kb on + strand, within CSW01_15290at 286.355 kb on + strandat 286.374 kb on + strandat 286.374 kb on + strandat 286.379 kb on + strandat 286.381 kb on + strandat 286.405 kb on - strandat 286.415 kb on + strandat 286.430 kb on - strandat 286.434 kb on + strandat 286.506 kb on + strandat 286.524 kb on - strandat 286.529 kb on - strandat 286.550 kb on - strandat 286.563 kb on + strandat 286.571 kb on - strandat 286.575 kb on + strandat 286.583 kb on - strandat 286.606 kb on + strandat 286.668 kb on - strandat 286.700 kb on + strandat 286.884 kb on - strand, within CSW01_15295at 286.896 kb on + strand, within CSW01_15295at 286.904 kb on - strand, within CSW01_15295at 286.904 kb on - strand, within CSW01_15295at 287.007 kb on + strand, within CSW01_15295at 287.015 kb on - strand, within CSW01_15295at 287.073 kb on + strand, within CSW01_15295at 287.083 kb on + strand, within CSW01_15295at 287.090 kb on + strand, within CSW01_15295at 287.091 kb on - strand, within CSW01_15295at 287.091 kb on - strand, within CSW01_15295at 287.098 kb on - strand, within CSW01_15295at 287.156 kb on + strand, within CSW01_15295at 287.218 kb on - strand, within CSW01_15295at 287.283 kb on + strand, within CSW01_15295at 287.283 kb on + strand, within CSW01_15295at 287.291 kb on - strand, within CSW01_15295at 287.308 kb on - strand, within CSW01_15295at 287.322 kb on + strand, within CSW01_15295at 287.330 kb on - strand, within CSW01_15295at 287.333 kb on + strand, within CSW01_15295at 287.333 kb on + strand, within CSW01_15295at 287.333 kb on + strand, within CSW01_15295at 287.355 kb on + strand, within CSW01_15295at 287.364 kb on - strand, within CSW01_15295at 287.374 kb on - strand, within CSW01_15295at 287.374 kb on - strand, within CSW01_15295at 287.425 kb on - strand, within CSW01_15295at 287.661 kb on - strand, within CSW01_15295at 287.661 kb on - strand, within CSW01_15295at 287.742 kb on + strand, within CSW01_15295at 287.764 kb on + strand, within CSW01_15295at 288.027 kb on - strand, within CSW01_15295at 288.064 kb on - strandat 288.064 kb on - strandat 288.087 kb on + strandat 288.095 kb on - strandat 288.095 kb on - strandat 288.107 kb on + strandat 288.110 kb on - strandat 288.115 kb on - strandat 288.154 kb on + strandat 288.217 kb on + strandat 288.217 kb on + strandat 288.235 kb on - strandat 288.240 kb on - strandat 288.244 kb on + strandat 288.263 kb on + strandat 288.263 kb on + strandat 288.271 kb on - strandat 288.294 kb on - strandat 288.294 kb on - strandat 288.309 kb on + strandat 288.343 kb on - strandat 288.517 kb on + strand, within CSW01_15300at 288.523 kb on + strand, within CSW01_15300at 288.648 kb on - strand, within CSW01_15300at 288.867 kb on + strand, within CSW01_15300at 288.868 kb on + strand, within CSW01_15300at 288.898 kb on + strand, within CSW01_15300at 288.898 kb on + strand, within CSW01_15300at 288.900 kb on + strand, within CSW01_15300at 288.900 kb on + strand, within CSW01_15300at 288.900 kb on + strand, within CSW01_15300at 288.900 kb on + strand, within CSW01_15300at 288.900 kb on + strand, within CSW01_15300at 288.900 kb on + strand, within CSW01_15300at 288.900 kb on + strand, within CSW01_15300at 288.900 kb on + strand, within CSW01_15300at 288.906 kb on - strand, within CSW01_15300at 288.906 kb on - strand, within CSW01_15300at 288.908 kb on - strand, within CSW01_15300at 288.908 kb on - strand, within CSW01_15300at 288.908 kb on - strand, within CSW01_15300at 288.908 kb on - strand, within CSW01_15300at 288.908 kb on - strand, within CSW01_15300at 288.908 kb on - strand, within CSW01_15300at 288.908 kb on - strand, within CSW01_15300at 288.908 kb on - strand, within CSW01_15300at 288.908 kb on - strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.925 kb on + strand, within CSW01_15300at 288.989 kb on - strand, within CSW01_15300at 289.024 kb on - strand, within CSW01_15300at 289.032 kb on - strand, within CSW01_15300at 289.069 kb on + strand, within CSW01_15300at 289.074 kb on + strand, within CSW01_15300at 289.077 kb on - strand, within CSW01_15300at 289.082 kb on - strand, within CSW01_15300at 289.087 kb on + strand, within CSW01_15300at 289.087 kb on + strand, within CSW01_15300at 289.087 kb on + strand, within CSW01_15300at 289.088 kb on + strand, within CSW01_15300at 289.093 kb on + strand, within CSW01_15300at 289.093 kb on + strand, within CSW01_15300at 289.093 kb on + strand, within CSW01_15300at 289.133 kb on + strand, within CSW01_15300at 289.166 kb on + strand, within CSW01_15300at 289.194 kb on + strand, within CSW01_15300at 289.196 kb on + strand, within CSW01_15300

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_120MIN_ZN11B
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285,572 + CSW01_15290 0.51 -0.1
285,577 + CSW01_15290 0.51 -0.1
285,580 - CSW01_15290 0.51 -0.4
285,585 - CSW01_15290 0.51 -0.1
285,587 + CSW01_15290 0.52 -0.5
285,629 + CSW01_15290 0.54 +0.5
285,644 + CSW01_15290 0.55 -0.5
285,693 - CSW01_15290 0.57 +0.2
285,718 - CSW01_15290 0.58 -0.4
285,720 + CSW01_15290 0.58 +0.0
285,720 + CSW01_15290 0.58 +0.5
285,728 - CSW01_15290 0.59 -0.5
285,829 + CSW01_15290 0.64 -0.8
285,834 + CSW01_15290 0.64 +0.8
286,058 + CSW01_15290 0.76 -2.8
286,091 + CSW01_15290 0.78 -0.0
286,138 - CSW01_15290 0.80 -0.1
286,156 + CSW01_15290 0.81 +0.5
286,156 + CSW01_15290 0.81 +0.3
286,203 + CSW01_15290 0.83 +0.7
286,210 - CSW01_15290 0.84 +0.2
286,221 + CSW01_15290 0.84 +1.1
286,229 - CSW01_15290 0.85 +0.4
286,233 + CSW01_15290 0.85 +1.3
286,233 + CSW01_15290 0.85 +0.7
286,254 - CSW01_15290 0.86 -0.4
286,269 + CSW01_15290 0.87 +0.4
286,269 + CSW01_15290 0.87 -1.2
286,277 + CSW01_15290 0.87 -0.6
286,277 + CSW01_15290 0.87 +0.9
286,285 - CSW01_15290 0.88 -0.2
286,287 + CSW01_15290 0.88 -0.4
286,295 - CSW01_15290 0.88 +0.1
286,302 + CSW01_15290 0.89 -0.0
286,310 - CSW01_15290 0.89 -0.9
286,310 - CSW01_15290 0.89 +0.1
286,317 + CSW01_15290 0.89 -0.1
286,355 + +0.6
286,374 + +0.1
286,374 + +0.1
286,379 + +1.3
286,381 + -0.3
286,405 - +0.1
286,415 + +0.1
286,430 - +0.2
286,434 + -0.0
286,506 + -0.7
286,524 - -0.4
286,529 - +0.5
286,550 - +0.3
286,563 + -0.4
286,571 - -0.3
286,575 + +0.2
286,583 - +0.0
286,606 + +0.0
286,668 - -0.0
286,700 + +0.6
286,884 - CSW01_15295 0.21 +0.3
286,896 + CSW01_15295 0.21 -0.4
286,904 - CSW01_15295 0.22 +0.8
286,904 - CSW01_15295 0.22 -0.2
287,007 + CSW01_15295 0.28 -0.3
287,015 - CSW01_15295 0.28 -1.3
287,073 + CSW01_15295 0.32 +0.7
287,083 + CSW01_15295 0.33 +0.6
287,090 + CSW01_15295 0.33 +1.1
287,091 - CSW01_15295 0.33 -0.6
287,091 - CSW01_15295 0.33 +0.0
287,098 - CSW01_15295 0.33 -0.6
287,156 + CSW01_15295 0.37 +0.3
287,218 - CSW01_15295 0.41 +0.2
287,283 + CSW01_15295 0.45 -0.1
287,283 + CSW01_15295 0.45 -0.8
287,291 - CSW01_15295 0.45 -0.5
287,308 - CSW01_15295 0.46 +0.5
287,322 + CSW01_15295 0.47 +2.0
287,330 - CSW01_15295 0.47 +0.1
287,333 + CSW01_15295 0.47 -0.1
287,333 + CSW01_15295 0.47 +0.5
287,333 + CSW01_15295 0.47 -0.6
287,355 + CSW01_15295 0.49 +0.1
287,364 - CSW01_15295 0.49 +0.1
287,374 - CSW01_15295 0.50 -0.3
287,374 - CSW01_15295 0.50 -0.2
287,425 - CSW01_15295 0.53 -0.3
287,661 - CSW01_15295 0.67 +0.6
287,661 - CSW01_15295 0.67 +0.1
287,742 + CSW01_15295 0.72 +0.6
287,764 + CSW01_15295 0.73 -0.2
288,027 - CSW01_15295 0.89 -0.5
288,064 - +0.1
288,064 - +0.3
288,087 + -0.2
288,095 - -0.2
288,095 - +0.0
288,107 + -0.5
288,110 - -0.0
288,115 - +0.6
288,154 + +0.1
288,217 + -0.3
288,217 + -0.1
288,235 - -0.1
288,240 - -1.1
288,244 + +0.5
288,263 + +0.1
288,263 + -0.7
288,271 - -0.0
288,294 - -0.8
288,294 - -0.5
288,309 + +0.3
288,343 - +0.1
288,517 + CSW01_15300 0.12 +0.9
288,523 + CSW01_15300 0.13 +0.8
288,648 - CSW01_15300 0.23 -1.4
288,867 + CSW01_15300 0.42 -0.0
288,868 + CSW01_15300 0.42 +0.0
288,898 + CSW01_15300 0.45 +0.1
288,898 + CSW01_15300 0.45 -0.4
288,900 + CSW01_15300 0.45 -1.0
288,900 + CSW01_15300 0.45 +0.3
288,900 + CSW01_15300 0.45 +0.1
288,900 + CSW01_15300 0.45 -0.4
288,900 + CSW01_15300 0.45 -1.4
288,900 + CSW01_15300 0.45 -0.3
288,900 + CSW01_15300 0.45 +1.0
288,900 + CSW01_15300 0.45 +0.5
288,906 - CSW01_15300 0.45 -0.4
288,906 - CSW01_15300 0.45 +0.9
288,908 - CSW01_15300 0.45 -0.1
288,908 - CSW01_15300 0.45 +0.3
288,908 - CSW01_15300 0.45 +0.1
288,908 - CSW01_15300 0.45 -0.3
288,908 - CSW01_15300 0.45 +0.2
288,908 - CSW01_15300 0.45 -0.3
288,908 - CSW01_15300 0.45 +0.8
288,908 - CSW01_15300 0.45 +0.3
288,908 - CSW01_15300 0.45 +1.3
288,910 + CSW01_15300 0.46 +0.4
288,910 + CSW01_15300 0.46 +1.1
288,910 + CSW01_15300 0.46 +1.0
288,910 + CSW01_15300 0.46 +0.3
288,910 + CSW01_15300 0.46 +1.5
288,910 + CSW01_15300 0.46 +0.5
288,910 + CSW01_15300 0.46 +0.8
288,910 + CSW01_15300 0.46 -0.5
288,910 + CSW01_15300 0.46 +0.1
288,910 + CSW01_15300 0.46 +0.5
288,910 + CSW01_15300 0.46 -0.7
288,910 + CSW01_15300 0.46 +0.2
288,910 + CSW01_15300 0.46 +0.6
288,910 + CSW01_15300 0.46 +1.0
288,910 + CSW01_15300 0.46 +0.7
288,910 + CSW01_15300 0.46 +0.0
288,910 + CSW01_15300 0.46 -0.3
288,910 + CSW01_15300 0.46 +0.5
288,918 - CSW01_15300 0.46 +2.0
288,918 - CSW01_15300 0.46 +0.2
288,918 - CSW01_15300 0.46 -0.4
288,918 - CSW01_15300 0.46 -0.3
288,918 - CSW01_15300 0.46 -0.2
288,918 - CSW01_15300 0.46 +0.4
288,918 - CSW01_15300 0.46 +0.2
288,918 - CSW01_15300 0.46 -1.0
288,918 - CSW01_15300 0.46 -0.2
288,918 - CSW01_15300 0.46 +1.1
288,918 - CSW01_15300 0.46 -0.1
288,918 - CSW01_15300 0.46 -0.2
288,918 - CSW01_15300 0.46 +0.9
288,918 - CSW01_15300 0.46 +2.8
288,925 + CSW01_15300 0.47 -0.3
288,989 - CSW01_15300 0.52 -0.6
289,024 - CSW01_15300 0.55 +0.9
289,032 - CSW01_15300 0.56 -2.4
289,069 + CSW01_15300 0.59 +0.1
289,074 + CSW01_15300 0.60 -0.5
289,077 - CSW01_15300 0.60 -0.7
289,082 - CSW01_15300 0.60 -0.7
289,087 + CSW01_15300 0.61 +1.7
289,087 + CSW01_15300 0.61 +1.1
289,087 + CSW01_15300 0.61 +0.0
289,088 + CSW01_15300 0.61 -0.0
289,093 + CSW01_15300 0.61 -0.4
289,093 + CSW01_15300 0.61 -1.4
289,093 + CSW01_15300 0.61 +0.7
289,133 + CSW01_15300 0.65 -0.9
289,166 + CSW01_15300 0.68 +0.4
289,194 + CSW01_15300 0.70 -0.1
289,196 + CSW01_15300 0.70 -0.1

Or see this region's nucleotide sequence