Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14740

Experiment: LB_0.5%bileacids_aerobic_120MIN_ZN11B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14735 and CSW01_14740 overlap by 4 nucleotidesCSW01_14740 and CSW01_14745 are separated by 372 nucleotides CSW01_14735: CSW01_14735 - C4-dicarboxylate ABC transporter permease, at 160,371 to 162,512 _14735 CSW01_14740: CSW01_14740 - L-2-hydroxyglutarate oxidase, at 162,509 to 163,720 _14740 CSW01_14745: CSW01_14745 - peptidase M66, at 164,093 to 167,836 _14745 Position (kb) 162 163 164Strain fitness (log2 ratio) -2 -1 0 1 2at 161.715 kb on + strand, within CSW01_14735at 161.749 kb on + strand, within CSW01_14735at 161.749 kb on + strand, within CSW01_14735at 161.757 kb on - strand, within CSW01_14735at 161.757 kb on - strand, within CSW01_14735at 161.757 kb on - strand, within CSW01_14735at 161.757 kb on - strand, within CSW01_14735at 161.757 kb on - strand, within CSW01_14735at 161.757 kb on - strand, within CSW01_14735at 161.757 kb on - strand, within CSW01_14735at 161.757 kb on - strand, within CSW01_14735at 161.804 kb on + strand, within CSW01_14735at 161.822 kb on + strand, within CSW01_14735at 161.830 kb on - strand, within CSW01_14735at 161.977 kb on - strand, within CSW01_14735at 161.982 kb on - strand, within CSW01_14735at 162.015 kb on + strand, within CSW01_14735at 162.022 kb on + strand, within CSW01_14735at 162.024 kb on - strand, within CSW01_14735at 162.030 kb on - strand, within CSW01_14735at 162.099 kb on + strand, within CSW01_14735at 162.162 kb on + strand, within CSW01_14735at 162.217 kb on + strand, within CSW01_14735at 162.220 kb on + strand, within CSW01_14735at 162.225 kb on - strand, within CSW01_14735at 162.225 kb on - strand, within CSW01_14735at 162.261 kb on + strand, within CSW01_14735at 162.314 kb on - strandat 162.314 kb on - strandat 162.338 kb on + strandat 162.380 kb on - strandat 162.415 kb on + strandat 162.423 kb on - strandat 162.433 kb on - strandat 162.480 kb on - strandat 162.520 kb on - strandat 162.553 kb on + strandat 162.559 kb on - strandat 162.561 kb on - strandat 162.641 kb on + strand, within CSW01_14740at 162.646 kb on + strand, within CSW01_14740at 162.751 kb on + strand, within CSW01_14740at 162.789 kb on + strand, within CSW01_14740at 163.124 kb on - strand, within CSW01_14740at 163.124 kb on - strand, within CSW01_14740at 163.129 kb on - strand, within CSW01_14740at 163.286 kb on - strand, within CSW01_14740at 163.291 kb on - strand, within CSW01_14740at 163.352 kb on + strand, within CSW01_14740at 163.376 kb on - strand, within CSW01_14740at 163.435 kb on + strand, within CSW01_14740at 163.493 kb on - strand, within CSW01_14740at 163.530 kb on + strand, within CSW01_14740at 163.537 kb on + strand, within CSW01_14740at 163.537 kb on + strand, within CSW01_14740at 163.538 kb on - strand, within CSW01_14740at 163.545 kb on - strand, within CSW01_14740at 163.545 kb on - strand, within CSW01_14740at 163.545 kb on - strand, within CSW01_14740at 163.550 kb on - strand, within CSW01_14740at 163.623 kb on + strandat 163.623 kb on + strandat 163.623 kb on + strandat 163.631 kb on - strandat 163.633 kb on + strandat 163.633 kb on + strandat 163.641 kb on - strandat 163.893 kb on + strandat 163.901 kb on - strandat 163.902 kb on - strandat 163.903 kb on + strandat 164.020 kb on + strandat 164.139 kb on - strandat 164.139 kb on - strandat 164.174 kb on + strandat 164.174 kb on + strandat 164.177 kb on - strandat 164.177 kb on - strandat 164.266 kb on - strandat 164.344 kb on - strandat 164.502 kb on + strand, within CSW01_14745at 164.502 kb on + strand, within CSW01_14745at 164.502 kb on + strand, within CSW01_14745at 164.502 kb on + strand, within CSW01_14745at 164.502 kb on + strand, within CSW01_14745at 164.510 kb on - strand, within CSW01_14745at 164.510 kb on - strand, within CSW01_14745at 164.510 kb on - strand, within CSW01_14745at 164.510 kb on - strand, within CSW01_14745at 164.510 kb on - strand, within CSW01_14745at 164.510 kb on - strand, within CSW01_14745at 164.526 kb on + strand, within CSW01_14745at 164.576 kb on + strand, within CSW01_14745at 164.576 kb on + strand, within CSW01_14745at 164.576 kb on + strand, within CSW01_14745at 164.588 kb on + strand, within CSW01_14745at 164.596 kb on - strand, within CSW01_14745at 164.635 kb on + strand, within CSW01_14745at 164.651 kb on + strand, within CSW01_14745at 164.678 kb on - strand, within CSW01_14745at 164.692 kb on + strand, within CSW01_14745at 164.692 kb on + strand, within CSW01_14745at 164.692 kb on + strand, within CSW01_14745

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_120MIN_ZN11B
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161,715 + CSW01_14735 0.63 +1.2
161,749 + CSW01_14735 0.64 -0.2
161,749 + CSW01_14735 0.64 -0.4
161,757 - CSW01_14735 0.65 +0.2
161,757 - CSW01_14735 0.65 +0.2
161,757 - CSW01_14735 0.65 -0.8
161,757 - CSW01_14735 0.65 +0.1
161,757 - CSW01_14735 0.65 +2.7
161,757 - CSW01_14735 0.65 +0.4
161,757 - CSW01_14735 0.65 -0.8
161,757 - CSW01_14735 0.65 -0.7
161,804 + CSW01_14735 0.67 +1.4
161,822 + CSW01_14735 0.68 -0.5
161,830 - CSW01_14735 0.68 -0.1
161,977 - CSW01_14735 0.75 +0.0
161,982 - CSW01_14735 0.75 -0.8
162,015 + CSW01_14735 0.77 +0.5
162,022 + CSW01_14735 0.77 -0.4
162,024 - CSW01_14735 0.77 -0.4
162,030 - CSW01_14735 0.77 -0.2
162,099 + CSW01_14735 0.81 +0.8
162,162 + CSW01_14735 0.84 -0.2
162,217 + CSW01_14735 0.86 -2.1
162,220 + CSW01_14735 0.86 +0.3
162,225 - CSW01_14735 0.87 +1.2
162,225 - CSW01_14735 0.87 -0.7
162,261 + CSW01_14735 0.88 +0.1
162,314 - +0.6
162,314 - -0.4
162,338 + +0.5
162,380 - -0.1
162,415 + -0.5
162,423 - +1.4
162,433 - -1.0
162,480 - -1.7
162,520 - +0.5
162,553 + +0.3
162,559 - +0.2
162,561 - +1.2
162,641 + CSW01_14740 0.11 +0.3
162,646 + CSW01_14740 0.11 +0.2
162,751 + CSW01_14740 0.20 -0.1
162,789 + CSW01_14740 0.23 -0.0
163,124 - CSW01_14740 0.51 +0.2
163,124 - CSW01_14740 0.51 +1.1
163,129 - CSW01_14740 0.51 -0.3
163,286 - CSW01_14740 0.64 -0.7
163,291 - CSW01_14740 0.65 +0.8
163,352 + CSW01_14740 0.70 +0.5
163,376 - CSW01_14740 0.72 +0.2
163,435 + CSW01_14740 0.76 +0.5
163,493 - CSW01_14740 0.81 +1.1
163,530 + CSW01_14740 0.84 -1.5
163,537 + CSW01_14740 0.85 +0.7
163,537 + CSW01_14740 0.85 +0.9
163,538 - CSW01_14740 0.85 -0.6
163,545 - CSW01_14740 0.85 +0.4
163,545 - CSW01_14740 0.85 +0.9
163,545 - CSW01_14740 0.85 +1.0
163,550 - CSW01_14740 0.86 +0.9
163,623 + -0.1
163,623 + +2.1
163,623 + -0.8
163,631 - +0.2
163,633 + +0.1
163,633 + -1.5
163,641 - +0.1
163,893 + +1.5
163,901 - -0.2
163,902 - +1.2
163,903 + +0.5
164,020 + -0.8
164,139 - -0.4
164,139 - +0.6
164,174 + -0.5
164,174 + +0.3
164,177 - +0.8
164,177 - +0.3
164,266 - -0.5
164,344 - +0.2
164,502 + CSW01_14745 0.11 +0.9
164,502 + CSW01_14745 0.11 -0.2
164,502 + CSW01_14745 0.11 -0.0
164,502 + CSW01_14745 0.11 -0.0
164,502 + CSW01_14745 0.11 -0.2
164,510 - CSW01_14745 0.11 +0.1
164,510 - CSW01_14745 0.11 +0.4
164,510 - CSW01_14745 0.11 +0.5
164,510 - CSW01_14745 0.11 -0.4
164,510 - CSW01_14745 0.11 -1.5
164,510 - CSW01_14745 0.11 -0.6
164,526 + CSW01_14745 0.12 +0.2
164,576 + CSW01_14745 0.13 -0.1
164,576 + CSW01_14745 0.13 +0.1
164,576 + CSW01_14745 0.13 +0.9
164,588 + CSW01_14745 0.13 +0.5
164,596 - CSW01_14745 0.13 +2.4
164,635 + CSW01_14745 0.14 +1.1
164,651 + CSW01_14745 0.15 -0.1
164,678 - CSW01_14745 0.16 -0.9
164,692 + CSW01_14745 0.16 -0.5
164,692 + CSW01_14745 0.16 -1.2
164,692 + CSW01_14745 0.16 -2.5

Or see this region's nucleotide sequence