Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14080

Experiment: LB_0.5%bileacids_aerobic_120MIN_ZN11B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14070 and CSW01_14075 are separated by 209 nucleotidesCSW01_14075 and CSW01_14080 are separated by 93 nucleotidesCSW01_14080 and CSW01_14085 are separated by 87 nucleotidesCSW01_14085 and CSW01_14090 are separated by 114 nucleotides CSW01_14070: CSW01_14070 - transcriptional regulator, at 3,330 to 3,944 _14070 CSW01_14075: CSW01_14075 - hypothetical protein, at 4,154 to 4,351 _14075 CSW01_14080: CSW01_14080 - DUF3283 domain-containing protein, at 4,445 to 4,723 _14080 CSW01_14085: CSW01_14085 - transcriptional regulator, at 4,811 to 5,530 _14085 CSW01_14090: CSW01_14090 - NAD(P)-dependent oxidoreductase, at 5,645 to 6,520 _14090 Position (kb) 4 5Strain fitness (log2 ratio) -2 -1 0 1 2at 3.452 kb on + strand, within CSW01_14070at 3.459 kb on + strand, within CSW01_14070at 3.460 kb on - strand, within CSW01_14070at 3.460 kb on - strand, within CSW01_14070at 3.460 kb on - strand, within CSW01_14070at 3.460 kb on - strand, within CSW01_14070at 3.460 kb on - strand, within CSW01_14070at 3.525 kb on - strand, within CSW01_14070at 3.532 kb on + strand, within CSW01_14070at 3.535 kb on - strand, within CSW01_14070at 3.540 kb on - strand, within CSW01_14070at 3.585 kb on - strand, within CSW01_14070at 3.651 kb on + strand, within CSW01_14070at 3.651 kb on + strand, within CSW01_14070at 3.675 kb on + strand, within CSW01_14070at 3.755 kb on + strand, within CSW01_14070at 3.763 kb on - strand, within CSW01_14070at 3.763 kb on - strand, within CSW01_14070at 3.772 kb on - strand, within CSW01_14070at 3.772 kb on - strand, within CSW01_14070at 3.782 kb on - strand, within CSW01_14070at 3.853 kb on + strand, within CSW01_14070at 3.861 kb on - strand, within CSW01_14070at 3.973 kb on - strandat 3.973 kb on - strandat 4.011 kb on - strandat 4.117 kb on + strandat 4.125 kb on - strandat 4.166 kb on - strandat 4.265 kb on + strand, within CSW01_14075at 4.288 kb on + strand, within CSW01_14075at 4.339 kb on - strandat 4.343 kb on - strandat 4.682 kb on - strand, within CSW01_14080at 4.755 kb on + strandat 4.867 kb on + strandat 4.875 kb on - strandat 5.111 kb on - strand, within CSW01_14085at 5.130 kb on + strand, within CSW01_14085at 5.393 kb on + strand, within CSW01_14085at 5.429 kb on + strand, within CSW01_14085at 5.429 kb on + strand, within CSW01_14085at 5.437 kb on - strand, within CSW01_14085at 5.437 kb on - strand, within CSW01_14085at 5.437 kb on - strand, within CSW01_14085at 5.437 kb on - strand, within CSW01_14085at 5.503 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_120MIN_ZN11B
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3,452 + CSW01_14070 0.20 +1.0
3,459 + CSW01_14070 0.21 -0.8
3,460 - CSW01_14070 0.21 +0.1
3,460 - CSW01_14070 0.21 -0.4
3,460 - CSW01_14070 0.21 -0.4
3,460 - CSW01_14070 0.21 -0.3
3,460 - CSW01_14070 0.21 +0.7
3,525 - CSW01_14070 0.32 +0.0
3,532 + CSW01_14070 0.33 -0.2
3,535 - CSW01_14070 0.33 -0.5
3,540 - CSW01_14070 0.34 -0.4
3,585 - CSW01_14070 0.41 +0.1
3,651 + CSW01_14070 0.52 -0.2
3,651 + CSW01_14070 0.52 +1.2
3,675 + CSW01_14070 0.56 -0.3
3,755 + CSW01_14070 0.69 +0.7
3,763 - CSW01_14070 0.70 +0.6
3,763 - CSW01_14070 0.70 +0.9
3,772 - CSW01_14070 0.72 -0.3
3,772 - CSW01_14070 0.72 +0.1
3,782 - CSW01_14070 0.73 +0.1
3,853 + CSW01_14070 0.85 -0.1
3,861 - CSW01_14070 0.86 -0.4
3,973 - -0.8
3,973 - -0.2
4,011 - +0.2
4,117 + +0.5
4,125 - -0.4
4,166 - +0.7
4,265 + CSW01_14075 0.56 -0.6
4,288 + CSW01_14075 0.68 -0.1
4,339 - +0.5
4,343 - -0.3
4,682 - CSW01_14080 0.85 +0.5
4,755 + +0.1
4,867 + +0.5
4,875 - +2.7
5,111 - CSW01_14085 0.42 +1.7
5,130 + CSW01_14085 0.44 -0.9
5,393 + CSW01_14085 0.81 +1.4
5,429 + CSW01_14085 0.86 +0.1
5,429 + CSW01_14085 0.86 -0.9
5,437 - CSW01_14085 0.87 +0.1
5,437 - CSW01_14085 0.87 +2.4
5,437 - CSW01_14085 0.87 -0.9
5,437 - CSW01_14085 0.87 -2.5
5,503 + +1.5

Or see this region's nucleotide sequence