Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13645

Experiment: LB_0.5%bileacids_aerobic_120MIN_ZN11B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_0.5%bileacids_aerobic_120MIN_ZN11B
2,905,136	+				-0.4
2,905,149	-				+0.6
2,905,213	+				+0.7
2,905,213	+				+0.1
2,905,214	-				-0.3
2,905,221	-				+0.5
2,905,254	-				-0.8
2,905,255	-				+0.5
2,905,339	+				+0.0
2,905,339	+				-0.5
2,905,347	-				+1.1
2,905,402	+				+0.8
2,905,460	-		CSW01_13640	0.11	+0.4
2,905,460	-		CSW01_13640	0.11	+0.2
2,905,465	-		CSW01_13640	0.11	-0.1
2,905,535	-		CSW01_13640	0.23	-0.6
2,905,593	+		CSW01_13640	0.32	-0.0
2,905,675	-		CSW01_13640	0.45	-0.6
2,905,688	-		CSW01_13640	0.47	-0.2
2,905,696	+		CSW01_13640	0.48	+0.3
2,905,751	+		CSW01_13640	0.57	-0.1
2,905,819	-		CSW01_13640	0.68	+0.3
2,905,859	-		CSW01_13640	0.74	+0.9
2,905,883	-		CSW01_13640	0.78	+0.3
2,906,056	+				+0.2
2,906,062	+				+0.6
2,906,095	+				+0.1
2,906,095	-				-1.0
2,906,146	+				+0.4
2,906,243	+				+1.3
2,906,246	-				-0.2
2,906,279	-				-1.0
2,906,286	-				-0.4
2,906,296	+		CSW01_13645	0.10	+1.3
2,906,304	-		CSW01_13645	0.10	+1.2
2,906,304	-		CSW01_13645	0.10	+0.3
2,906,313	+		CSW01_13645	0.11	-0.4
2,906,313	+		CSW01_13645	0.11	-0.2
2,906,320	+		CSW01_13645	0.11	+0.1
2,906,413	-		CSW01_13645	0.17	+0.4
2,906,422	+		CSW01_13645	0.17	+0.5
2,906,422	+		CSW01_13645	0.17	+0.3
2,906,432	+		CSW01_13645	0.18	+0.2
2,906,445	+		CSW01_13645	0.19	+0.5
2,906,466	+		CSW01_13645	0.20	-0.3
2,906,473	-		CSW01_13645	0.20	-1.1
2,906,474	-		CSW01_13645	0.20	-1.2
2,906,510	+		CSW01_13645	0.22	+1.7
2,906,565	+		CSW01_13645	0.25	+1.6
2,906,578	+		CSW01_13645	0.26	-0.1
2,906,611	+		CSW01_13645	0.28	+1.1
2,906,618	+		CSW01_13645	0.28	+0.5
2,906,707	+		CSW01_13645	0.34	+0.8
2,906,707	+		CSW01_13645	0.34	+1.0
2,906,707	+		CSW01_13645	0.34	-0.3
2,906,712	+		CSW01_13645	0.34	+0.2
2,906,715	-		CSW01_13645	0.34	-1.4
2,906,717	+		CSW01_13645	0.34	+1.3
2,906,717	+		CSW01_13645	0.34	+0.1
2,906,717	+		CSW01_13645	0.34	-0.8
2,906,719	+		CSW01_13645	0.34	+0.0
2,906,725	-		CSW01_13645	0.35	+0.2
2,906,725	-		CSW01_13645	0.35	+0.6
2,906,725	-		CSW01_13645	0.35	-0.3
2,906,770	+		CSW01_13645	0.37	+0.8
2,906,770	+		CSW01_13645	0.37	+0.3
2,906,776	+		CSW01_13645	0.38	+1.4
2,906,777	+		CSW01_13645	0.38	+0.7
2,906,778	-		CSW01_13645	0.38	-0.4
2,906,795	-		CSW01_13645	0.39	+0.1
2,906,833	+		CSW01_13645	0.41	+0.1
2,906,833	+		CSW01_13645	0.41	+0.5
2,906,843	+		CSW01_13645	0.41	-0.2
2,906,848	+		CSW01_13645	0.42	+0.6
2,906,851	-		CSW01_13645	0.42	-0.2
2,906,884	+		CSW01_13645	0.44	-0.1
2,906,894	+		CSW01_13645	0.44	+0.1
2,906,902	-		CSW01_13645	0.45	+0.5
2,906,908	-		CSW01_13645	0.45	-0.1
2,906,912	+		CSW01_13645	0.45	-0.1
2,906,922	-		CSW01_13645	0.46	+0.9
2,906,958	+		CSW01_13645	0.48	-0.4
2,906,966	+		CSW01_13645	0.48	-0.3
2,906,966	+		CSW01_13645	0.48	-0.6
2,907,063	-		CSW01_13645	0.54	+0.5
2,907,076	-		CSW01_13645	0.55	+0.2
2,907,099	+		CSW01_13645	0.56	+0.2
2,907,145	-		CSW01_13645	0.59	-0.0
2,907,180	-		CSW01_13645	0.61	+0.3
2,907,258	+		CSW01_13645	0.65	-0.8
2,907,295	-		CSW01_13645	0.67	-0.1
2,907,334	+		CSW01_13645	0.69	-0.3
2,907,336	+		CSW01_13645	0.70	+0.3
2,907,336	+		CSW01_13645	0.70	+0.6
2,907,336	+		CSW01_13645	0.70	+0.5
2,907,336	+		CSW01_13645	0.70	+0.1
2,907,344	-		CSW01_13645	0.70	+0.9
2,907,344	-		CSW01_13645	0.70	-0.9
2,907,344	-		CSW01_13645	0.70	-0.0
2,907,344	-		CSW01_13645	0.70	-0.1
2,907,344	-		CSW01_13645	0.70	+0.3
2,907,356	-		CSW01_13645	0.71	+0.7
2,907,361	-		CSW01_13645	0.71	+0.7
2,907,425	+		CSW01_13645	0.75	+0.2
2,907,433	-		CSW01_13645	0.75	+1.6
2,907,439	+		CSW01_13645	0.75	-0.3
2,907,447	-		CSW01_13645	0.76	+1.7
2,907,482	+		CSW01_13645	0.78	+0.6
2,907,492	+		CSW01_13645	0.79	+0.0
2,907,492	+		CSW01_13645	0.79	+0.6
2,907,492	+		CSW01_13645	0.79	-0.4
2,907,492	+		CSW01_13645	0.79	+0.4
2,907,500	-		CSW01_13645	0.79	-0.2
2,907,502	+		CSW01_13645	0.79	-0.5
2,907,535	-		CSW01_13645	0.81	-1.1
2,907,563	+		CSW01_13645	0.83	-0.3
2,907,578	-		CSW01_13645	0.83	+0.1
2,907,620	+		CSW01_13645	0.86	-0.9
2,907,708	+				+0.2
2,907,721	-				+1.6
2,907,726	-				+0.5
2,907,730	+				-0.0
2,907,746	-				+0.2
2,907,746	-				-0.4
2,907,793	+				-0.8
2,907,793	+				-0.0
2,907,793	+				-0.3
2,907,793	+				+0.2
2,907,801	-				+0.1
2,907,801	-				+0.3
2,907,813	-				+0.3
2,907,819	+				-1.2
2,907,870	+				+0.5
2,907,870	+				+0.8
2,907,893	-				+0.1
2,907,921	-				-1.0
2,907,997	+				+0.4
2,908,022	+				+0.3
2,908,049	-				-0.6
2,908,100	+				+0.4
2,908,100	+				+0.4
2,908,108	-				-0.4
2,908,108	-				+0.5
2,908,181	+				-0.6
2,908,277	-		CSW01_13650	0.12	+0.2
2,908,277	-		CSW01_13650	0.12	-0.5
2,908,322	+		CSW01_13650	0.29	+0.2
2,908,336	+		CSW01_13650	0.34	+0.4
2,908,391	+		CSW01_13650	0.55	-0.2
2,908,428	+		CSW01_13650	0.69	+0.4
2,908,506	+				+0.6
2,908,526	-				+0.3
2,908,562	+				+0.4
2,908,580	-				-0.1
2,908,603	+				+1.7
2,908,617	+				+0.5
2,908,636	+				+0.8
2,908,636	+				-1.1
2,908,636	+				+1.1
2,908,636	+				-1.7
2,908,636	+				-0.3
2,908,636	+				-0.1
2,908,636	+				+0.9
2,908,636	+				+0.2
2,908,636	+				+0.5
2,908,636	+				-0.5
2,908,636	+				+0.1
2,908,637	+				+0.8
2,908,642	-				-0.0
2,908,644	-				-0.0
2,908,644	-				+0.4
2,908,644	-				+0.3
2,908,644	-				+0.3
2,908,644	-				+0.4
2,908,644	-				+0.7
2,908,644	-				+0.9
2,908,645	-				-1.2
2,908,730	+		CSW01_13655	0.12	+0.1
2,908,742	+		CSW01_13655	0.13	+0.3
2,908,755	+		CSW01_13655	0.14	+0.5
2,908,763	-		CSW01_13655	0.14	+0.4
2,908,769	+		CSW01_13655	0.14	+0.2
2,908,769	+		CSW01_13655	0.14	+0.2
2,908,769	+		CSW01_13655	0.14	+1.1
2,908,769	+		CSW01_13655	0.14	+0.1
2,908,769	+		CSW01_13655	0.14	-0.2
2,908,777	-		CSW01_13655	0.15	-0.8
2,908,777	-		CSW01_13655	0.15	+0.7
2,908,777	-		CSW01_13655	0.15	-0.1
2,908,777	-		CSW01_13655	0.15	+0.3
2,908,783	+		CSW01_13655	0.15	+1.4
2,908,804	-		CSW01_13655	0.17	+0.9
2,908,857	+		CSW01_13655	0.20	-1.4
2,908,857	+		CSW01_13655	0.20	-0.8
2,908,857	+		CSW01_13655	0.20	+0.5
2,908,857	+		CSW01_13655	0.20	-0.1
2,908,857	+		CSW01_13655	0.20	+0.6
2,908,857	+		CSW01_13655	0.20	+1.3
2,908,857	+		CSW01_13655	0.20	+1.8
2,908,857	+		CSW01_13655	0.20	-0.7
2,908,865	-		CSW01_13655	0.20	+0.4
2,908,865	-		CSW01_13655	0.20	-0.1
2,908,865	-		CSW01_13655	0.20	-0.5