Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_08470

Experiment: LB_0.5%bileacids_aerobic_120MIN_ZN11B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_08460 and CSW01_08465 overlap by 4 nucleotidesCSW01_08465 and CSW01_08470 are separated by 0 nucleotidesCSW01_08470 and CSW01_08475 are separated by 36 nucleotidesCSW01_08475 and CSW01_08480 are separated by 134 nucleotides CSW01_08460: CSW01_08460 - ABC transporter ATP-binding protein, at 1,816,035 to 1,817,030 _08460 CSW01_08465: CSW01_08465 - ABC transporter ATP-binding protein, at 1,817,027 to 1,817,815 _08465 CSW01_08470: CSW01_08470 - DUF2927 domain-containing protein, at 1,817,816 to 1,818,586 _08470 CSW01_08475: CSW01_08475 - DUF2750 domain-containing protein, at 1,818,623 to 1,819,012 _08475 CSW01_08480: CSW01_08480 - manganese-dependent inorganic pyrophosphatase, at 1,819,147 to 1,820,052 _08480 Position (kb) 1817 1818 1819Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1817.021 kb on + strandat 1817.106 kb on - strand, within CSW01_08465at 1817.141 kb on + strand, within CSW01_08465at 1817.141 kb on + strand, within CSW01_08465at 1817.211 kb on + strand, within CSW01_08465at 1817.236 kb on - strand, within CSW01_08465at 1817.311 kb on + strand, within CSW01_08465at 1817.349 kb on - strand, within CSW01_08465at 1817.566 kb on + strand, within CSW01_08465at 1817.922 kb on + strand, within CSW01_08470at 1817.922 kb on + strand, within CSW01_08470at 1817.922 kb on + strand, within CSW01_08470at 1817.922 kb on + strand, within CSW01_08470at 1817.930 kb on - strand, within CSW01_08470at 1817.930 kb on - strand, within CSW01_08470at 1817.932 kb on + strand, within CSW01_08470at 1818.056 kb on - strand, within CSW01_08470at 1818.088 kb on + strand, within CSW01_08470at 1818.097 kb on - strand, within CSW01_08470at 1818.299 kb on + strand, within CSW01_08470at 1818.307 kb on - strand, within CSW01_08470at 1818.327 kb on - strand, within CSW01_08470at 1818.331 kb on + strand, within CSW01_08470at 1818.339 kb on - strand, within CSW01_08470at 1818.339 kb on - strand, within CSW01_08470at 1818.361 kb on + strand, within CSW01_08470at 1818.361 kb on + strand, within CSW01_08470at 1818.447 kb on - strand, within CSW01_08470at 1818.461 kb on + strand, within CSW01_08470at 1818.558 kb on + strandat 1818.647 kb on - strandat 1818.730 kb on + strand, within CSW01_08475at 1818.730 kb on + strand, within CSW01_08475at 1818.730 kb on + strand, within CSW01_08475at 1818.730 kb on + strand, within CSW01_08475at 1818.737 kb on + strand, within CSW01_08475at 1818.738 kb on - strand, within CSW01_08475at 1818.738 kb on - strand, within CSW01_08475at 1818.738 kb on - strand, within CSW01_08475at 1818.810 kb on + strand, within CSW01_08475at 1818.867 kb on + strand, within CSW01_08475at 1818.882 kb on - strand, within CSW01_08475at 1819.001 kb on - strandat 1819.094 kb on + strandat 1819.210 kb on + strandat 1819.259 kb on + strand, within CSW01_08480at 1819.267 kb on - strand, within CSW01_08480at 1819.311 kb on - strand, within CSW01_08480at 1819.355 kb on + strand, within CSW01_08480at 1819.399 kb on - strand, within CSW01_08480at 1819.399 kb on - strand, within CSW01_08480at 1819.507 kb on + strand, within CSW01_08480

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_120MIN_ZN11B
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1,817,021 + +1.0
1,817,106 - CSW01_08465 0.10 +0.0
1,817,141 + CSW01_08465 0.14 +0.0
1,817,141 + CSW01_08465 0.14 +1.0
1,817,211 + CSW01_08465 0.23 +0.0
1,817,236 - CSW01_08465 0.26 -2.8
1,817,311 + CSW01_08465 0.36 +0.3
1,817,349 - CSW01_08465 0.41 -1.0
1,817,566 + CSW01_08465 0.68 -1.3
1,817,922 + CSW01_08470 0.14 +0.4
1,817,922 + CSW01_08470 0.14 +1.0
1,817,922 + CSW01_08470 0.14 +0.2
1,817,922 + CSW01_08470 0.14 +0.4
1,817,930 - CSW01_08470 0.15 +0.7
1,817,930 - CSW01_08470 0.15 +0.2
1,817,932 + CSW01_08470 0.15 +1.3
1,818,056 - CSW01_08470 0.31 +0.2
1,818,088 + CSW01_08470 0.35 +0.7
1,818,097 - CSW01_08470 0.36 +0.6
1,818,299 + CSW01_08470 0.63 +1.6
1,818,307 - CSW01_08470 0.64 -0.5
1,818,327 - CSW01_08470 0.66 -0.2
1,818,331 + CSW01_08470 0.67 -1.2
1,818,339 - CSW01_08470 0.68 +0.9
1,818,339 - CSW01_08470 0.68 -1.6
1,818,361 + CSW01_08470 0.71 -0.3
1,818,361 + CSW01_08470 0.71 +0.0
1,818,447 - CSW01_08470 0.82 +0.4
1,818,461 + CSW01_08470 0.84 +0.3
1,818,558 + +0.3
1,818,647 - +0.9
1,818,730 + CSW01_08475 0.27 -0.7
1,818,730 + CSW01_08475 0.27 +0.3
1,818,730 + CSW01_08475 0.27 -0.4
1,818,730 + CSW01_08475 0.27 +1.3
1,818,737 + CSW01_08475 0.29 -0.2
1,818,738 - CSW01_08475 0.29 +0.4
1,818,738 - CSW01_08475 0.29 -0.4
1,818,738 - CSW01_08475 0.29 -0.3
1,818,810 + CSW01_08475 0.48 +0.0
1,818,867 + CSW01_08475 0.63 +1.8
1,818,882 - CSW01_08475 0.66 -0.6
1,819,001 - -0.1
1,819,094 + -0.7
1,819,210 + -0.7
1,819,259 + CSW01_08480 0.12 +0.0
1,819,267 - CSW01_08480 0.13 -0.7
1,819,311 - CSW01_08480 0.18 +0.5
1,819,355 + CSW01_08480 0.23 +0.5
1,819,399 - CSW01_08480 0.28 -0.5
1,819,399 - CSW01_08480 0.28 -0.5
1,819,507 + CSW01_08480 0.40 +0.6

Or see this region's nucleotide sequence