Experiment: LB_0.5%bileacids_aerobic_120MIN_ZN11B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_07150 and CSW01_07155 overlap by 1 nucleotides CSW01_07155 and CSW01_07160 overlap by 20 nucleotides CSW01_07160 and CSW01_07165 are separated by 285 nucleotides
CSW01_07150: CSW01_07150 - spermidine/putrescine ABC transporter permease PotC, at 1,522,926 to 1,523,696
_07150
CSW01_07155: CSW01_07155 - spermidine/putrescine ABC transporter permease PotB, at 1,523,696 to 1,524,556
_07155
CSW01_07160: CSW01_07160 - spermidine/putrescine ABC transporter ATP-binding protein, at 1,524,537 to 1,525,670
_07160
CSW01_07165: CSW01_07165 - hypothetical protein, at 1,525,956 to 1,526,801
_07165
Position (kb)
1524
1525
1526 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1523.784 kb on - strand, within CSW01_07155 at 1523.891 kb on - strand, within CSW01_07155 at 1523.891 kb on - strand, within CSW01_07155 at 1523.906 kb on + strand, within CSW01_07155 at 1524.310 kb on + strand, within CSW01_07155 at 1524.310 kb on + strand, within CSW01_07155 at 1524.480 kb on - strand at 1524.493 kb on + strand at 1524.753 kb on + strand, within CSW01_07160 at 1525.027 kb on + strand, within CSW01_07160 at 1525.179 kb on + strand, within CSW01_07160 at 1525.237 kb on + strand, within CSW01_07160 at 1525.237 kb on + strand, within CSW01_07160 at 1525.245 kb on - strand, within CSW01_07160 at 1525.245 kb on - strand, within CSW01_07160 at 1525.245 kb on - strand, within CSW01_07160 at 1525.245 kb on - strand, within CSW01_07160 at 1525.334 kb on - strand, within CSW01_07160 at 1525.373 kb on + strand, within CSW01_07160 at 1525.393 kb on + strand, within CSW01_07160 at 1525.558 kb on + strand at 1525.842 kb on - strand at 1526.026 kb on - strand at 1526.031 kb on - strand at 1526.209 kb on + strand, within CSW01_07165 at 1526.217 kb on - strand, within CSW01_07165 at 1526.232 kb on - strand, within CSW01_07165 at 1526.246 kb on + strand, within CSW01_07165 at 1526.253 kb on + strand, within CSW01_07165 at 1526.413 kb on + strand, within CSW01_07165 at 1526.431 kb on - strand, within CSW01_07165 at 1526.637 kb on + strand, within CSW01_07165 at 1526.647 kb on + strand, within CSW01_07165 at 1526.652 kb on + strand, within CSW01_07165 at 1526.658 kb on + strand, within CSW01_07165 at 1526.666 kb on - strand, within CSW01_07165 at 1526.666 kb on - strand, within CSW01_07165
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_120MIN_ZN11B remove 1,523,784 - CSW01_07155 0.10 -1.5 1,523,891 - CSW01_07155 0.23 -0.4 1,523,891 - CSW01_07155 0.23 -0.7 1,523,906 + CSW01_07155 0.24 -2.2 1,524,310 + CSW01_07155 0.71 -0.0 1,524,310 + CSW01_07155 0.71 -2.3 1,524,480 - +0.1 1,524,493 + -0.2 1,524,753 + CSW01_07160 0.19 -1.6 1,525,027 + CSW01_07160 0.43 -0.6 1,525,179 + CSW01_07160 0.57 +0.4 1,525,237 + CSW01_07160 0.62 -0.8 1,525,237 + CSW01_07160 0.62 -0.6 1,525,245 - CSW01_07160 0.62 -1.2 1,525,245 - CSW01_07160 0.62 -0.9 1,525,245 - CSW01_07160 0.62 -2.6 1,525,245 - CSW01_07160 0.62 -2.5 1,525,334 - CSW01_07160 0.70 +0.2 1,525,373 + CSW01_07160 0.74 -1.3 1,525,393 + CSW01_07160 0.75 -0.2 1,525,558 + -0.1 1,525,842 - -0.2 1,526,026 - -1.7 1,526,031 - +0.6 1,526,209 + CSW01_07165 0.30 -0.8 1,526,217 - CSW01_07165 0.31 -0.1 1,526,232 - CSW01_07165 0.33 -0.1 1,526,246 + CSW01_07165 0.34 +0.4 1,526,253 + CSW01_07165 0.35 -1.8 1,526,413 + CSW01_07165 0.54 -0.3 1,526,431 - CSW01_07165 0.56 +3.0 1,526,637 + CSW01_07165 0.80 -2.8 1,526,647 + CSW01_07165 0.82 -0.9 1,526,652 + CSW01_07165 0.82 +0.3 1,526,658 + CSW01_07165 0.83 -0.9 1,526,666 - CSW01_07165 0.84 -0.0 1,526,666 - CSW01_07165 0.84 -1.4
Or see this region's nucleotide sequence