Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_07160

Experiment: LB_0.5%bileacids_aerobic_120MIN_ZN11B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_07150 and CSW01_07155 overlap by 1 nucleotidesCSW01_07155 and CSW01_07160 overlap by 20 nucleotidesCSW01_07160 and CSW01_07165 are separated by 285 nucleotides CSW01_07150: CSW01_07150 - spermidine/putrescine ABC transporter permease PotC, at 1,522,926 to 1,523,696 _07150 CSW01_07155: CSW01_07155 - spermidine/putrescine ABC transporter permease PotB, at 1,523,696 to 1,524,556 _07155 CSW01_07160: CSW01_07160 - spermidine/putrescine ABC transporter ATP-binding protein, at 1,524,537 to 1,525,670 _07160 CSW01_07165: CSW01_07165 - hypothetical protein, at 1,525,956 to 1,526,801 _07165 Position (kb) 1524 1525 1526Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1523.784 kb on - strand, within CSW01_07155at 1523.891 kb on - strand, within CSW01_07155at 1523.891 kb on - strand, within CSW01_07155at 1523.906 kb on + strand, within CSW01_07155at 1524.310 kb on + strand, within CSW01_07155at 1524.310 kb on + strand, within CSW01_07155at 1524.480 kb on - strandat 1524.493 kb on + strandat 1524.753 kb on + strand, within CSW01_07160at 1525.027 kb on + strand, within CSW01_07160at 1525.179 kb on + strand, within CSW01_07160at 1525.237 kb on + strand, within CSW01_07160at 1525.237 kb on + strand, within CSW01_07160at 1525.245 kb on - strand, within CSW01_07160at 1525.245 kb on - strand, within CSW01_07160at 1525.245 kb on - strand, within CSW01_07160at 1525.245 kb on - strand, within CSW01_07160at 1525.334 kb on - strand, within CSW01_07160at 1525.373 kb on + strand, within CSW01_07160at 1525.393 kb on + strand, within CSW01_07160at 1525.558 kb on + strandat 1525.842 kb on - strandat 1526.026 kb on - strandat 1526.031 kb on - strandat 1526.209 kb on + strand, within CSW01_07165at 1526.217 kb on - strand, within CSW01_07165at 1526.232 kb on - strand, within CSW01_07165at 1526.246 kb on + strand, within CSW01_07165at 1526.253 kb on + strand, within CSW01_07165at 1526.413 kb on + strand, within CSW01_07165at 1526.431 kb on - strand, within CSW01_07165at 1526.637 kb on + strand, within CSW01_07165at 1526.647 kb on + strand, within CSW01_07165at 1526.652 kb on + strand, within CSW01_07165at 1526.658 kb on + strand, within CSW01_07165at 1526.666 kb on - strand, within CSW01_07165at 1526.666 kb on - strand, within CSW01_07165

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_120MIN_ZN11B
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1,523,784 - CSW01_07155 0.10 -1.5
1,523,891 - CSW01_07155 0.23 -0.4
1,523,891 - CSW01_07155 0.23 -0.7
1,523,906 + CSW01_07155 0.24 -2.2
1,524,310 + CSW01_07155 0.71 -0.0
1,524,310 + CSW01_07155 0.71 -2.3
1,524,480 - +0.1
1,524,493 + -0.2
1,524,753 + CSW01_07160 0.19 -1.6
1,525,027 + CSW01_07160 0.43 -0.6
1,525,179 + CSW01_07160 0.57 +0.4
1,525,237 + CSW01_07160 0.62 -0.8
1,525,237 + CSW01_07160 0.62 -0.6
1,525,245 - CSW01_07160 0.62 -1.2
1,525,245 - CSW01_07160 0.62 -0.9
1,525,245 - CSW01_07160 0.62 -2.6
1,525,245 - CSW01_07160 0.62 -2.5
1,525,334 - CSW01_07160 0.70 +0.2
1,525,373 + CSW01_07160 0.74 -1.3
1,525,393 + CSW01_07160 0.75 -0.2
1,525,558 + -0.1
1,525,842 - -0.2
1,526,026 - -1.7
1,526,031 - +0.6
1,526,209 + CSW01_07165 0.30 -0.8
1,526,217 - CSW01_07165 0.31 -0.1
1,526,232 - CSW01_07165 0.33 -0.1
1,526,246 + CSW01_07165 0.34 +0.4
1,526,253 + CSW01_07165 0.35 -1.8
1,526,413 + CSW01_07165 0.54 -0.3
1,526,431 - CSW01_07165 0.56 +3.0
1,526,637 + CSW01_07165 0.80 -2.8
1,526,647 + CSW01_07165 0.82 -0.9
1,526,652 + CSW01_07165 0.82 +0.3
1,526,658 + CSW01_07165 0.83 -0.9
1,526,666 - CSW01_07165 0.84 -0.0
1,526,666 - CSW01_07165 0.84 -1.4

Or see this region's nucleotide sequence