Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_07110

Experiment: LB_0.5%bileacids_aerobic_120MIN_ZN11B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_0.5%bileacids_aerobic_120MIN_ZN11B
1,514,284	+		CSW01_07105	0.48	-1.1
1,514,310	-		CSW01_07105	0.49	+1.6
1,514,315	+		CSW01_07105	0.49	+1.2
1,514,315	+		CSW01_07105	0.49	+1.1
1,514,320	-		CSW01_07105	0.50	-0.4
1,514,327	+		CSW01_07105	0.50	+0.1
1,514,327	+		CSW01_07105	0.50	-0.5
1,514,327	+		CSW01_07105	0.50	+0.0
1,514,327	+		CSW01_07105	0.50	-0.3
1,514,335	-		CSW01_07105	0.51	-0.2
1,514,335	-		CSW01_07105	0.51	-0.8
1,514,335	-		CSW01_07105	0.51	+0.7
1,514,335	-		CSW01_07105	0.51	-0.0
1,514,337	+		CSW01_07105	0.51	-0.5
1,514,347	+		CSW01_07105	0.51	+0.3
1,514,347	+		CSW01_07105	0.51	+0.3
1,514,347	+		CSW01_07105	0.51	-0.6
1,514,355	-		CSW01_07105	0.52	-0.2
1,514,365	+		CSW01_07105	0.52	-0.3
1,514,365	-		CSW01_07105	0.52	-1.0
1,514,368	+		CSW01_07105	0.52	-0.3
1,514,427	+		CSW01_07105	0.55	+0.4
1,514,435	-		CSW01_07105	0.56	-0.3
1,514,435	-		CSW01_07105	0.56	+0.5
1,514,436	-		CSW01_07105	0.56	-0.0
1,514,472	+		CSW01_07105	0.58	+0.6
1,514,473	+		CSW01_07105	0.58	-0.1
1,514,480	-		CSW01_07105	0.58	-0.2
1,514,481	-		CSW01_07105	0.58	-0.8
1,514,481	-		CSW01_07105	0.58	-0.3
1,514,481	-		CSW01_07105	0.58	-0.4
1,514,495	+		CSW01_07105	0.59	+0.2
1,514,495	+		CSW01_07105	0.59	-0.2
1,514,542	-		CSW01_07105	0.61	+0.1
1,514,581	+		CSW01_07105	0.63	+0.2
1,514,581	+		CSW01_07105	0.63	-0.3
1,514,594	-		CSW01_07105	0.64	-0.4
1,514,648	+		CSW01_07105	0.67	+0.1
1,514,648	+		CSW01_07105	0.67	+0.5
1,514,648	+		CSW01_07105	0.67	-0.1
1,514,648	+		CSW01_07105	0.67	-0.4
1,514,650	+		CSW01_07105	0.67	+1.3
1,514,656	+		CSW01_07105	0.67	+1.0
1,514,656	-		CSW01_07105	0.67	+0.1
1,514,671	-		CSW01_07105	0.68	+0.8
1,514,671	-		CSW01_07105	0.68	+0.6
1,514,671	-		CSW01_07105	0.68	+1.3
1,514,676	-		CSW01_07105	0.68	-0.2
1,514,676	-		CSW01_07105	0.68	+0.1
1,514,686	-		CSW01_07105	0.69	-0.2
1,514,786	-		CSW01_07105	0.74	-0.3
1,514,789	+		CSW01_07105	0.74	+0.3
1,514,817	+		CSW01_07105	0.76	+0.9
1,514,817	+		CSW01_07105	0.76	-0.3
1,514,819	-		CSW01_07105	0.76	+0.7
1,514,850	+		CSW01_07105	0.77	-0.6
1,514,850	+		CSW01_07105	0.77	+1.2
1,514,850	+		CSW01_07105	0.77	-0.8
1,514,850	+		CSW01_07105	0.77	+0.1
1,514,850	+		CSW01_07105	0.77	-0.3
1,514,850	+		CSW01_07105	0.77	+0.7
1,514,850	+		CSW01_07105	0.77	+0.1
1,514,850	+		CSW01_07105	0.77	+0.6
1,514,854	-		CSW01_07105	0.77	+1.4
1,514,858	-		CSW01_07105	0.78	-1.1
1,514,858	-		CSW01_07105	0.78	+1.1
1,514,875	+		CSW01_07105	0.79	+0.2
1,514,894	+		CSW01_07105	0.80	-0.6
1,514,894	+		CSW01_07105	0.80	-0.2
1,514,902	+		CSW01_07105	0.80	-0.1
1,514,914	+		CSW01_07105	0.81	-0.5
1,514,915	+		CSW01_07105	0.81	-0.0
1,514,925	-		CSW01_07105	0.81	+0.7
1,514,932	+		CSW01_07105	0.82	+0.2
1,514,932	+		CSW01_07105	0.82	+0.0
1,514,932	+		CSW01_07105	0.82	+0.2
1,514,937	+		CSW01_07105	0.82	+0.4
1,514,937	+		CSW01_07105	0.82	-1.0
1,514,937	+		CSW01_07105	0.82	-1.2
1,514,940	-		CSW01_07105	0.82	+1.6
1,514,940	-		CSW01_07105	0.82	+2.3
1,514,940	-		CSW01_07105	0.82	-0.5
1,514,940	-		CSW01_07105	0.82	-0.4
1,514,942	+		CSW01_07105	0.82	+0.8
1,514,945	-		CSW01_07105	0.82	+0.5
1,514,950	-		CSW01_07105	0.82	+1.0
1,514,950	-		CSW01_07105	0.82	-1.0
1,514,951	-		CSW01_07105	0.83	+0.7
1,514,951	-		CSW01_07105	0.83	+0.7
1,514,963	+		CSW01_07105	0.83	+0.7
1,514,966	+		CSW01_07105	0.83	-1.3
1,514,966	+		CSW01_07105	0.83	+0.0
1,514,966	+		CSW01_07105	0.83	+0.2
1,514,966	+		CSW01_07105	0.83	+0.1
1,514,973	+		CSW01_07105	0.84	+0.4
1,514,973	+		CSW01_07105	0.84	-0.7
1,514,973	+		CSW01_07105	0.84	-0.0
1,514,973	+		CSW01_07105	0.84	+0.7
1,514,973	+		CSW01_07105	0.84	+0.3
1,514,981	-		CSW01_07105	0.84	+0.1
1,515,066	+		CSW01_07105	0.88	-0.7
1,515,123	+				+0.0
1,515,186	+				-0.2
1,515,193	+				-0.9
1,515,201	-				+0.2
1,515,203	+				+0.6
1,515,213	-				+0.2
1,515,215	+				+0.0
1,515,215	+				-1.1
1,515,215	+				-1.1
1,515,215	+				-0.0
1,515,215	+				+0.2
1,515,215	+				+0.3
1,515,215	+				-0.6
1,515,215	+				-0.3
1,515,215	+				-0.5
1,515,215	+				+0.2
1,515,215	+				+0.5
1,515,215	+				+0.2
1,515,215	+				-0.8
1,515,215	+				+0.9
1,515,215	+				-0.2
1,515,223	-				-0.7
1,515,223	-				-0.1
1,515,223	-				-0.2
1,515,252	+				-0.5
1,515,261	+				+0.2
1,515,977	+				+0.9
1,515,980	+				+0.1
1,515,980	+				+0.7
1,515,985	+				+0.1
1,515,987	-				-1.0
1,515,988	-				-0.7
1,515,988	-				+1.6
1,515,992	+				+1.4
1,515,992	+				+0.3
1,515,992	+				+0.8
1,515,992	+				-0.8
1,515,992	+				+0.1
1,515,992	+				+0.1
1,515,992	+				-1.0
1,515,992	+				+0.3
1,515,992	+				-0.2
1,515,992	+				+0.5
1,515,992	+				+0.0
1,515,992	+				+0.1
1,515,993	-				+1.1
1,516,000	-				-0.5
1,516,000	-				-0.5
1,516,000	-				-1.0
1,516,000	-				-0.5
1,516,000	-				-1.0
1,516,000	-				-0.6
1,516,000	-				-0.4
1,516,000	-				+0.1
1,516,000	-				+1.7
1,516,000	-				-0.1
1,516,000	-				-0.0
1,516,000	-				-0.8
1,516,000	-				+0.3
1,516,000	-				+0.4
1,516,000	-				-0.8
1,516,000	-				-0.5
1,516,000	-				+0.5
1,516,000	-				-0.8
1,516,000	-				-0.3
1,516,000	-				-0.3
1,516,000	-				+0.0
1,516,000	-				-0.0
1,516,202	+				+1.1
1,516,210	-				+0.3
1,516,221	-				-0.0
1,516,238	-				+0.0
1,516,249	+		CSW01_07115	0.10	-0.6
1,516,249	+		CSW01_07115	0.10	-0.8
1,516,249	+		CSW01_07115	0.10	-0.3
1,516,249	+		CSW01_07115	0.10	+1.1
1,516,249	+		CSW01_07115	0.10	+0.3
1,516,249	+		CSW01_07115	0.10	+0.5
1,516,249	+		CSW01_07115	0.10	-0.1
1,516,249	+		CSW01_07115	0.10	-1.0
1,516,249	+		CSW01_07115	0.10	+0.6
1,516,249	+		CSW01_07115	0.10	+1.8
1,516,249	+		CSW01_07115	0.10	-0.3
1,516,249	+		CSW01_07115	0.10	-0.5
1,516,249	+		CSW01_07115	0.10	+0.3
1,516,249	+		CSW01_07115	0.10	-0.4
1,516,249	+		CSW01_07115	0.10	+0.9
1,516,249	+		CSW01_07115	0.10	-0.9
1,516,249	+		CSW01_07115	0.10	+1.0
1,516,255	+		CSW01_07115	0.11	-0.1
1,516,257	-		CSW01_07115	0.12	-1.1
1,516,257	-		CSW01_07115	0.12	-0.2
1,516,257	-		CSW01_07115	0.12	-0.9
1,516,257	-		CSW01_07115	0.12	-0.0
1,516,257	-		CSW01_07115	0.12	+0.1
1,516,257	-		CSW01_07115	0.12	-0.3
1,516,257	-		CSW01_07115	0.12	-0.3
1,516,257	-		CSW01_07115	0.12	-0.3
1,516,257	-		CSW01_07115	0.12	-0.0
1,516,257	-		CSW01_07115	0.12	+1.5
1,516,257	-		CSW01_07115	0.12	-0.5
1,516,257	-		CSW01_07115	0.12	-0.4
1,516,257	-		CSW01_07115	0.12	+0.2
1,516,292	-		CSW01_07115	0.16	-0.1
1,516,292	-		CSW01_07115	0.16	+0.2
1,516,292	-		CSW01_07115	0.16	+0.7
1,516,292	-		CSW01_07115	0.16	+0.3
1,516,292	-		CSW01_07115	0.16	-0.1
1,516,293	-		CSW01_07115	0.16	-1.2
1,516,309	+		CSW01_07115	0.19	-0.4
1,516,351	-		CSW01_07115	0.24	-0.4
1,516,422	+		CSW01_07115	0.34	+0.3
1,516,430	-		CSW01_07115	0.35	+1.4
1,516,439	+		CSW01_07115	0.36	+0.8
1,516,439	+		CSW01_07115	0.36	+0.1
1,516,487	-		CSW01_07115	0.43	-1.1
1,516,489	+		CSW01_07115	0.43	-0.4
1,516,497	-		CSW01_07115	0.44	-0.0
1,516,499	+		CSW01_07115	0.44	-0.3
1,516,507	-		CSW01_07115	0.45	-0.5
1,516,566	+		CSW01_07115	0.53	-0.3
1,516,574	-		CSW01_07115	0.54	+0.5
1,516,574	-		CSW01_07115	0.54	+0.5
1,516,614	+		CSW01_07115	0.60	-0.7
1,516,671	-		CSW01_07115	0.68	+0.4
1,516,682	+		CSW01_07115	0.69	+0.3
1,516,684	-		CSW01_07115	0.69	+0.2
1,516,684	-		CSW01_07115	0.69	-0.2
1,516,690	-		CSW01_07115	0.70	+0.4
1,516,703	-		CSW01_07115	0.72	-1.8
1,516,723	+		CSW01_07115	0.75	-1.3
1,516,734	+		CSW01_07115	0.76	+0.9
1,516,753	+		CSW01_07115	0.79	+0.3
1,516,755	+		CSW01_07115	0.79	+0.3
1,516,805	+		CSW01_07115	0.86	-0.7
1,516,811	-		CSW01_07115	0.87	-0.9
1,516,813	-		CSW01_07115	0.87	-0.4
1,516,816	+		CSW01_07115	0.87	+1.0
1,516,842	+				+0.4
1,516,842	+				-2.1
1,516,862	-				-1.7