Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04755

Experiment: LB_0.5%bileacids_aerobic_120MIN_ZN11B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04750 and CSW01_04755 overlap by 11 nucleotidesCSW01_04755 and CSW01_04760 are separated by 195 nucleotides CSW01_04750: CSW01_04750 - aspartate-semialdehyde dehydrogenase, at 987,746 to 988,918 _04750 CSW01_04755: CSW01_04755 - glycosyltransferase, at 988,908 to 989,660 _04755 CSW01_04760: CSW01_04760 - hypothetical protein, at 989,856 to 990,671 _04760 Position (kb) 988 989 990Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 987.964 kb on + strand, within CSW01_04750at 987.964 kb on + strand, within CSW01_04750at 987.972 kb on - strand, within CSW01_04750at 987.972 kb on - strand, within CSW01_04750at 987.972 kb on - strand, within CSW01_04750at 987.972 kb on - strand, within CSW01_04750at 987.972 kb on - strand, within CSW01_04750at 988.181 kb on + strand, within CSW01_04750at 988.181 kb on + strand, within CSW01_04750at 988.181 kb on + strand, within CSW01_04750at 988.242 kb on + strand, within CSW01_04750at 988.250 kb on - strand, within CSW01_04750at 988.250 kb on - strand, within CSW01_04750at 988.365 kb on + strand, within CSW01_04750at 988.375 kb on + strand, within CSW01_04750at 988.396 kb on + strand, within CSW01_04750at 988.396 kb on + strand, within CSW01_04750at 988.404 kb on - strand, within CSW01_04750at 988.409 kb on - strand, within CSW01_04750at 988.421 kb on + strand, within CSW01_04750at 988.429 kb on - strand, within CSW01_04750at 988.433 kb on + strand, within CSW01_04750at 988.433 kb on + strand, within CSW01_04750at 988.441 kb on - strand, within CSW01_04750at 988.531 kb on - strand, within CSW01_04750at 988.538 kb on + strand, within CSW01_04750at 988.554 kb on - strand, within CSW01_04750at 988.624 kb on + strand, within CSW01_04750at 988.686 kb on + strand, within CSW01_04750at 988.688 kb on + strand, within CSW01_04750at 988.694 kb on - strand, within CSW01_04750at 988.694 kb on - strand, within CSW01_04750at 988.694 kb on - strand, within CSW01_04750at 988.700 kb on + strand, within CSW01_04750at 988.719 kb on - strand, within CSW01_04750at 988.730 kb on - strand, within CSW01_04750at 988.781 kb on + strand, within CSW01_04750at 988.791 kb on - strand, within CSW01_04750at 988.791 kb on - strand, within CSW01_04750at 988.825 kb on + strandat 988.832 kb on - strandat 988.865 kb on - strandat 988.865 kb on - strandat 988.872 kb on - strandat 989.014 kb on + strand, within CSW01_04755at 989.022 kb on - strand, within CSW01_04755at 989.051 kb on + strand, within CSW01_04755at 989.084 kb on + strand, within CSW01_04755at 989.084 kb on + strand, within CSW01_04755at 989.084 kb on + strand, within CSW01_04755at 989.087 kb on - strand, within CSW01_04755at 989.092 kb on - strand, within CSW01_04755at 989.119 kb on + strand, within CSW01_04755at 989.129 kb on + strand, within CSW01_04755at 989.137 kb on - strand, within CSW01_04755at 989.282 kb on + strand, within CSW01_04755at 989.295 kb on - strand, within CSW01_04755at 989.309 kb on - strand, within CSW01_04755at 989.309 kb on - strand, within CSW01_04755at 989.435 kb on - strand, within CSW01_04755at 989.440 kb on + strand, within CSW01_04755at 989.440 kb on + strand, within CSW01_04755at 989.440 kb on + strand, within CSW01_04755at 989.493 kb on - strand, within CSW01_04755at 989.520 kb on + strand, within CSW01_04755at 989.520 kb on + strand, within CSW01_04755at 989.520 kb on + strand, within CSW01_04755at 989.520 kb on + strand, within CSW01_04755at 989.520 kb on + strand, within CSW01_04755at 989.520 kb on + strand, within CSW01_04755at 989.520 kb on + strand, within CSW01_04755at 989.520 kb on + strand, within CSW01_04755at 989.520 kb on + strand, within CSW01_04755at 989.520 kb on + strand, within CSW01_04755at 989.520 kb on + strand, within CSW01_04755at 989.528 kb on - strand, within CSW01_04755at 989.528 kb on - strand, within CSW01_04755at 989.528 kb on - strand, within CSW01_04755at 989.528 kb on - strand, within CSW01_04755at 989.528 kb on - strand, within CSW01_04755at 989.528 kb on - strand, within CSW01_04755at 989.528 kb on - strand, within CSW01_04755at 989.528 kb on - strand, within CSW01_04755at 989.528 kb on - strand, within CSW01_04755at 989.528 kb on - strand, within CSW01_04755at 989.560 kb on - strand, within CSW01_04755at 989.560 kb on - strand, within CSW01_04755at 989.560 kb on - strand, within CSW01_04755at 989.560 kb on - strand, within CSW01_04755at 989.560 kb on - strand, within CSW01_04755at 989.560 kb on - strand, within CSW01_04755at 989.560 kb on - strand, within CSW01_04755at 989.568 kb on + strand, within CSW01_04755at 989.620 kb on - strandat 989.816 kb on + strandat 989.828 kb on + strandat 989.880 kb on - strandat 989.916 kb on + strandat 989.946 kb on + strand, within CSW01_04760at 989.946 kb on - strand, within CSW01_04760at 989.951 kb on + strand, within CSW01_04760at 989.954 kb on - strand, within CSW01_04760at 989.956 kb on - strand, within CSW01_04760at 989.960 kb on + strand, within CSW01_04760at 989.960 kb on + strand, within CSW01_04760at 989.960 kb on + strand, within CSW01_04760at 989.968 kb on - strand, within CSW01_04760at 989.968 kb on - strand, within CSW01_04760at 989.968 kb on - strand, within CSW01_04760at 989.980 kb on - strand, within CSW01_04760at 990.021 kb on + strand, within CSW01_04760at 990.026 kb on + strand, within CSW01_04760at 990.028 kb on + strand, within CSW01_04760at 990.028 kb on + strand, within CSW01_04760at 990.028 kb on + strand, within CSW01_04760at 990.028 kb on + strand, within CSW01_04760at 990.029 kb on - strand, within CSW01_04760at 990.029 kb on - strand, within CSW01_04760at 990.029 kb on - strand, within CSW01_04760at 990.031 kb on + strand, within CSW01_04760at 990.034 kb on - strand, within CSW01_04760at 990.036 kb on - strand, within CSW01_04760at 990.036 kb on - strand, within CSW01_04760at 990.036 kb on - strand, within CSW01_04760at 990.036 kb on - strand, within CSW01_04760at 990.036 kb on - strand, within CSW01_04760at 990.036 kb on - strand, within CSW01_04760at 990.046 kb on - strand, within CSW01_04760at 990.074 kb on - strand, within CSW01_04760at 990.100 kb on + strand, within CSW01_04760at 990.100 kb on + strand, within CSW01_04760at 990.108 kb on + strand, within CSW01_04760at 990.108 kb on + strand, within CSW01_04760at 990.108 kb on - strand, within CSW01_04760at 990.134 kb on + strand, within CSW01_04760at 990.142 kb on - strand, within CSW01_04760at 990.143 kb on + strand, within CSW01_04760at 990.148 kb on - strand, within CSW01_04760at 990.163 kb on + strand, within CSW01_04760at 990.169 kb on + strand, within CSW01_04760at 990.171 kb on - strand, within CSW01_04760at 990.186 kb on + strand, within CSW01_04760at 990.189 kb on - strand, within CSW01_04760at 990.196 kb on - strand, within CSW01_04760at 990.221 kb on + strand, within CSW01_04760at 990.221 kb on + strand, within CSW01_04760at 990.221 kb on + strand, within CSW01_04760at 990.221 kb on + strand, within CSW01_04760at 990.221 kb on + strand, within CSW01_04760at 990.221 kb on + strand, within CSW01_04760at 990.221 kb on + strand, within CSW01_04760at 990.221 kb on + strand, within CSW01_04760at 990.221 kb on + strand, within CSW01_04760at 990.221 kb on + strand, within CSW01_04760at 990.229 kb on - strand, within CSW01_04760at 990.229 kb on - strand, within CSW01_04760at 990.229 kb on - strand, within CSW01_04760at 990.229 kb on - strand, within CSW01_04760at 990.229 kb on - strand, within CSW01_04760at 990.229 kb on - strand, within CSW01_04760at 990.229 kb on - strand, within CSW01_04760at 990.229 kb on - strand, within CSW01_04760at 990.229 kb on - strand, within CSW01_04760at 990.229 kb on - strand, within CSW01_04760at 990.229 kb on - strand, within CSW01_04760at 990.229 kb on - strand, within CSW01_04760at 990.246 kb on - strand, within CSW01_04760at 990.260 kb on - strand, within CSW01_04760at 990.260 kb on - strand, within CSW01_04760at 990.328 kb on + strand, within CSW01_04760at 990.333 kb on + strand, within CSW01_04760at 990.341 kb on - strand, within CSW01_04760at 990.342 kb on + strand, within CSW01_04760at 990.372 kb on + strand, within CSW01_04760at 990.399 kb on - strand, within CSW01_04760at 990.405 kb on + strand, within CSW01_04760at 990.408 kb on - strand, within CSW01_04760at 990.408 kb on - strand, within CSW01_04760at 990.428 kb on - strand, within CSW01_04760at 990.434 kb on + strand, within CSW01_04760at 990.441 kb on + strand, within CSW01_04760at 990.441 kb on + strand, within CSW01_04760at 990.449 kb on - strand, within CSW01_04760at 990.449 kb on - strand, within CSW01_04760at 990.450 kb on + strand, within CSW01_04760at 990.453 kb on + strand, within CSW01_04760at 990.458 kb on + strand, within CSW01_04760at 990.458 kb on + strand, within CSW01_04760at 990.458 kb on + strand, within CSW01_04760at 990.466 kb on - strand, within CSW01_04760at 990.478 kb on + strand, within CSW01_04760at 990.478 kb on + strand, within CSW01_04760at 990.528 kb on - strand, within CSW01_04760at 990.534 kb on + strand, within CSW01_04760at 990.542 kb on - strand, within CSW01_04760at 990.552 kb on - strand, within CSW01_04760at 990.612 kb on + strandat 990.620 kb on - strandat 990.631 kb on - strandat 990.634 kb on + strandat 990.645 kb on - strandat 990.647 kb on + strandat 990.647 kb on + strandat 990.647 kb on + strandat 990.647 kb on + strandat 990.647 kb on + strandat 990.647 kb on - strandat 990.647 kb on - strandat 990.649 kb on + strandat 990.654 kb on - strandat 990.655 kb on - strandat 990.655 kb on - strandat 990.655 kb on - strandat 990.655 kb on - strandat 990.655 kb on - strandat 990.655 kb on - strandat 990.655 kb on - strandat 990.655 kb on - strandat 990.655 kb on - strandat 990.655 kb on - strandat 990.655 kb on - strandat 990.655 kb on - strandat 990.655 kb on - strandat 990.655 kb on - strandat 990.655 kb on - strandat 990.655 kb on - strandat 990.655 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_120MIN_ZN11B
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987,964 + CSW01_04750 0.19 +0.7
987,964 + CSW01_04750 0.19 -0.8
987,972 - CSW01_04750 0.19 -0.7
987,972 - CSW01_04750 0.19 -1.0
987,972 - CSW01_04750 0.19 +0.3
987,972 - CSW01_04750 0.19 +0.7
987,972 - CSW01_04750 0.19 +1.6
988,181 + CSW01_04750 0.37 -1.2
988,181 + CSW01_04750 0.37 -0.4
988,181 + CSW01_04750 0.37 +2.1
988,242 + CSW01_04750 0.42 -0.2
988,250 - CSW01_04750 0.43 -0.7
988,250 - CSW01_04750 0.43 +0.3
988,365 + CSW01_04750 0.53 -1.1
988,375 + CSW01_04750 0.54 -0.2
988,396 + CSW01_04750 0.55 -0.3
988,396 + CSW01_04750 0.55 -0.1
988,404 - CSW01_04750 0.56 +0.8
988,409 - CSW01_04750 0.57 -0.4
988,421 + CSW01_04750 0.58 +0.4
988,429 - CSW01_04750 0.58 -0.1
988,433 + CSW01_04750 0.59 -0.9
988,433 + CSW01_04750 0.59 -0.6
988,441 - CSW01_04750 0.59 -1.7
988,531 - CSW01_04750 0.67 +0.0
988,538 + CSW01_04750 0.68 +1.3
988,554 - CSW01_04750 0.69 +0.2
988,624 + CSW01_04750 0.75 +0.6
988,686 + CSW01_04750 0.80 -0.3
988,688 + CSW01_04750 0.80 +0.5
988,694 - CSW01_04750 0.81 -0.0
988,694 - CSW01_04750 0.81 +0.4
988,694 - CSW01_04750 0.81 +0.3
988,700 + CSW01_04750 0.81 -0.7
988,719 - CSW01_04750 0.83 -0.1
988,730 - CSW01_04750 0.84 +0.6
988,781 + CSW01_04750 0.88 -0.7
988,791 - CSW01_04750 0.89 +0.1
988,791 - CSW01_04750 0.89 +1.1
988,825 + +0.3
988,832 - +0.3
988,865 - +0.2
988,865 - +0.2
988,872 - +0.5
989,014 + CSW01_04755 0.14 -0.6
989,022 - CSW01_04755 0.15 +0.4
989,051 + CSW01_04755 0.19 +0.2
989,084 + CSW01_04755 0.23 +0.0
989,084 + CSW01_04755 0.23 +2.6
989,084 + CSW01_04755 0.23 +0.1
989,087 - CSW01_04755 0.24 +0.3
989,092 - CSW01_04755 0.24 +0.3
989,119 + CSW01_04755 0.28 -1.1
989,129 + CSW01_04755 0.29 +0.1
989,137 - CSW01_04755 0.30 +1.0
989,282 + CSW01_04755 0.50 +0.3
989,295 - CSW01_04755 0.51 +0.2
989,309 - CSW01_04755 0.53 -0.3
989,309 - CSW01_04755 0.53 +0.1
989,435 - CSW01_04755 0.70 +1.2
989,440 + CSW01_04755 0.71 -0.2
989,440 + CSW01_04755 0.71 +0.0
989,440 + CSW01_04755 0.71 +0.0
989,493 - CSW01_04755 0.78 -0.3
989,520 + CSW01_04755 0.81 -0.4
989,520 + CSW01_04755 0.81 -0.2
989,520 + CSW01_04755 0.81 +0.6
989,520 + CSW01_04755 0.81 -0.0
989,520 + CSW01_04755 0.81 -0.6
989,520 + CSW01_04755 0.81 +0.5
989,520 + CSW01_04755 0.81 +0.6
989,520 + CSW01_04755 0.81 +0.7
989,520 + CSW01_04755 0.81 +0.1
989,520 + CSW01_04755 0.81 -0.0
989,520 + CSW01_04755 0.81 +0.4
989,528 - CSW01_04755 0.82 +1.0
989,528 - CSW01_04755 0.82 -0.7
989,528 - CSW01_04755 0.82 +0.3
989,528 - CSW01_04755 0.82 -0.5
989,528 - CSW01_04755 0.82 -1.1
989,528 - CSW01_04755 0.82 -0.1
989,528 - CSW01_04755 0.82 -0.1
989,528 - CSW01_04755 0.82 +1.6
989,528 - CSW01_04755 0.82 +0.6
989,528 - CSW01_04755 0.82 +0.5
989,560 - CSW01_04755 0.87 +0.3
989,560 - CSW01_04755 0.87 +0.1
989,560 - CSW01_04755 0.87 -0.3
989,560 - CSW01_04755 0.87 -0.7
989,560 - CSW01_04755 0.87 -0.8
989,560 - CSW01_04755 0.87 -0.8
989,560 - CSW01_04755 0.87 -0.7
989,568 + CSW01_04755 0.88 -0.2
989,620 - -0.3
989,816 + +0.4
989,828 + -0.3
989,880 - -0.1
989,916 + +1.2
989,946 + CSW01_04760 0.11 -0.3
989,946 - CSW01_04760 0.11 -0.1
989,951 + CSW01_04760 0.12 +0.2
989,954 - CSW01_04760 0.12 -0.3
989,956 - CSW01_04760 0.12 -0.4
989,960 + CSW01_04760 0.13 +0.6
989,960 + CSW01_04760 0.13 +0.5
989,960 + CSW01_04760 0.13 -1.0
989,968 - CSW01_04760 0.14 -0.5
989,968 - CSW01_04760 0.14 +0.5
989,968 - CSW01_04760 0.14 -0.8
989,980 - CSW01_04760 0.15 +0.3
990,021 + CSW01_04760 0.20 +0.7
990,026 + CSW01_04760 0.21 -0.8
990,028 + CSW01_04760 0.21 +0.1
990,028 + CSW01_04760 0.21 +0.8
990,028 + CSW01_04760 0.21 +0.5
990,028 + CSW01_04760 0.21 +0.3
990,029 - CSW01_04760 0.21 +1.2
990,029 - CSW01_04760 0.21 -0.3
990,029 - CSW01_04760 0.21 +1.7
990,031 + CSW01_04760 0.21 +1.1
990,034 - CSW01_04760 0.22 +1.6
990,036 - CSW01_04760 0.22 -1.3
990,036 - CSW01_04760 0.22 +0.9
990,036 - CSW01_04760 0.22 +0.3
990,036 - CSW01_04760 0.22 +0.4
990,036 - CSW01_04760 0.22 +0.2
990,036 - CSW01_04760 0.22 -0.1
990,046 - CSW01_04760 0.23 +1.0
990,074 - CSW01_04760 0.27 -0.6
990,100 + CSW01_04760 0.30 -0.0
990,100 + CSW01_04760 0.30 +1.1
990,108 + CSW01_04760 0.31 +0.7
990,108 + CSW01_04760 0.31 +0.1
990,108 - CSW01_04760 0.31 +0.7
990,134 + CSW01_04760 0.34 -1.3
990,142 - CSW01_04760 0.35 -0.4
990,143 + CSW01_04760 0.35 +2.2
990,148 - CSW01_04760 0.36 +0.5
990,163 + CSW01_04760 0.38 -0.3
990,169 + CSW01_04760 0.38 +0.7
990,171 - CSW01_04760 0.39 +0.2
990,186 + CSW01_04760 0.40 -0.3
990,189 - CSW01_04760 0.41 +0.4
990,196 - CSW01_04760 0.42 +3.6
990,221 + CSW01_04760 0.45 -0.0
990,221 + CSW01_04760 0.45 -0.3
990,221 + CSW01_04760 0.45 -0.3
990,221 + CSW01_04760 0.45 +0.3
990,221 + CSW01_04760 0.45 +0.1
990,221 + CSW01_04760 0.45 +1.3
990,221 + CSW01_04760 0.45 +0.3
990,221 + CSW01_04760 0.45 -1.8
990,221 + CSW01_04760 0.45 -0.1
990,221 + CSW01_04760 0.45 +0.5
990,229 - CSW01_04760 0.46 -0.3
990,229 - CSW01_04760 0.46 +0.3
990,229 - CSW01_04760 0.46 -0.2
990,229 - CSW01_04760 0.46 -0.8
990,229 - CSW01_04760 0.46 -0.2
990,229 - CSW01_04760 0.46 +0.0
990,229 - CSW01_04760 0.46 +0.5
990,229 - CSW01_04760 0.46 -0.7
990,229 - CSW01_04760 0.46 +0.1
990,229 - CSW01_04760 0.46 +1.4
990,229 - CSW01_04760 0.46 +0.1
990,229 - CSW01_04760 0.46 -0.7
990,246 - CSW01_04760 0.48 -3.4
990,260 - CSW01_04760 0.50 -0.2
990,260 - CSW01_04760 0.50 -0.1
990,328 + CSW01_04760 0.58 -0.8
990,333 + CSW01_04760 0.58 -0.3
990,341 - CSW01_04760 0.59 +0.4
990,342 + CSW01_04760 0.60 +0.2
990,372 + CSW01_04760 0.63 +0.1
990,399 - CSW01_04760 0.67 +0.1
990,405 + CSW01_04760 0.67 -0.4
990,408 - CSW01_04760 0.68 -0.2
990,408 - CSW01_04760 0.68 +0.4
990,428 - CSW01_04760 0.70 +0.2
990,434 + CSW01_04760 0.71 -0.2
990,441 + CSW01_04760 0.72 +0.6
990,441 + CSW01_04760 0.72 +0.2
990,449 - CSW01_04760 0.73 +0.3
990,449 - CSW01_04760 0.73 -1.2
990,450 + CSW01_04760 0.73 -0.0
990,453 + CSW01_04760 0.73 +0.2
990,458 + CSW01_04760 0.74 -0.8
990,458 + CSW01_04760 0.74 -0.1
990,458 + CSW01_04760 0.74 +0.1
990,466 - CSW01_04760 0.75 -1.4
990,478 + CSW01_04760 0.76 -0.2
990,478 + CSW01_04760 0.76 +0.6
990,528 - CSW01_04760 0.82 -0.3
990,534 + CSW01_04760 0.83 +0.5
990,542 - CSW01_04760 0.84 +1.8
990,552 - CSW01_04760 0.85 +0.3
990,612 + +0.4
990,620 - +0.8
990,631 - +0.6
990,634 + -1.2
990,645 - +0.8
990,647 + +0.5
990,647 + +0.4
990,647 + +0.0
990,647 + +0.1
990,647 + -0.6
990,647 - +1.6
990,647 - +0.7
990,649 + +0.4
990,654 - -0.1
990,655 - +0.3
990,655 - -0.9
990,655 - -0.9
990,655 - -0.4
990,655 - +0.2
990,655 - -0.7
990,655 - +0.9
990,655 - +0.0
990,655 - +1.0
990,655 - -1.0
990,655 - -0.0
990,655 - +0.3
990,655 - -0.4
990,655 - -1.2
990,655 - +0.1
990,655 - +1.3
990,655 - +0.9

Or see this region's nucleotide sequence