Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04545

Experiment: LB_0.5%bileacids_aerobic_120MIN_ZN11B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04535 and CSW01_04540 overlap by 44 nucleotidesCSW01_04540 and CSW01_04545 are separated by 3 nucleotidesCSW01_04545 and CSW01_04550 are separated by 88 nucleotidesCSW01_04550 and CSW01_04555 are separated by 0 nucleotides CSW01_04535: CSW01_04535 - N-acetyltransferase, at 943,106 to 943,729 _04535 CSW01_04540: CSW01_04540 - DUF3301 domain-containing protein, at 943,686 to 943,988 _04540 CSW01_04545: CSW01_04545 - DUF3549 domain-containing protein, at 943,992 to 945,029 _04545 CSW01_04550: CSW01_04550 - pseudouridine synthase, at 945,118 to 945,429 _04550 CSW01_04555: CSW01_04555 - tRNA pseudouridine(65) synthase TruC, at 945,430 to 946,164 _04555 Position (kb) 943 944 945 946Strain fitness (log2 ratio) -1 0 1 2at 943.006 kb on + strandat 943.077 kb on + strandat 943.085 kb on - strandat 943.085 kb on - strandat 943.085 kb on - strandat 943.228 kb on + strand, within CSW01_04535at 943.228 kb on + strand, within CSW01_04535at 943.236 kb on - strand, within CSW01_04535at 943.387 kb on + strand, within CSW01_04535at 943.387 kb on + strand, within CSW01_04535at 943.395 kb on - strand, within CSW01_04535at 943.414 kb on - strand, within CSW01_04535at 943.445 kb on + strand, within CSW01_04535at 943.573 kb on + strand, within CSW01_04535at 943.616 kb on - strand, within CSW01_04535at 943.683 kb on + strandat 943.683 kb on + strandat 943.683 kb on + strandat 943.683 kb on + strandat 943.732 kb on - strand, within CSW01_04540at 943.809 kb on + strand, within CSW01_04540at 943.817 kb on - strand, within CSW01_04540at 943.849 kb on - strand, within CSW01_04540at 944.018 kb on + strandat 944.026 kb on - strandat 944.026 kb on - strandat 944.026 kb on - strandat 944.031 kb on + strandat 944.132 kb on + strand, within CSW01_04545at 944.140 kb on - strand, within CSW01_04545at 944.233 kb on - strand, within CSW01_04545at 944.310 kb on + strand, within CSW01_04545at 944.310 kb on + strand, within CSW01_04545at 944.318 kb on - strand, within CSW01_04545at 944.318 kb on - strand, within CSW01_04545at 944.318 kb on - strand, within CSW01_04545at 944.371 kb on - strand, within CSW01_04545at 944.414 kb on + strand, within CSW01_04545at 944.419 kb on + strand, within CSW01_04545at 944.421 kb on + strand, within CSW01_04545at 944.429 kb on - strand, within CSW01_04545at 944.431 kb on + strand, within CSW01_04545at 944.431 kb on + strand, within CSW01_04545at 944.439 kb on - strand, within CSW01_04545at 944.464 kb on + strand, within CSW01_04545at 944.464 kb on + strand, within CSW01_04545at 944.465 kb on - strand, within CSW01_04545at 944.482 kb on - strand, within CSW01_04545at 944.563 kb on - strand, within CSW01_04545at 944.611 kb on + strand, within CSW01_04545at 944.619 kb on - strand, within CSW01_04545at 944.726 kb on - strand, within CSW01_04545at 944.727 kb on - strand, within CSW01_04545at 944.773 kb on + strand, within CSW01_04545at 944.773 kb on + strand, within CSW01_04545at 944.807 kb on + strand, within CSW01_04545at 944.833 kb on + strand, within CSW01_04545at 944.843 kb on + strand, within CSW01_04545at 944.843 kb on + strand, within CSW01_04545at 944.851 kb on - strand, within CSW01_04545at 944.851 kb on - strand, within CSW01_04545at 944.893 kb on + strand, within CSW01_04545at 944.915 kb on - strand, within CSW01_04545at 945.062 kb on + strandat 945.123 kb on + strandat 945.131 kb on - strandat 945.131 kb on - strandat 945.173 kb on + strand, within CSW01_04550at 945.214 kb on + strand, within CSW01_04550at 945.224 kb on + strand, within CSW01_04550at 945.232 kb on - strand, within CSW01_04550at 945.250 kb on + strand, within CSW01_04550at 945.250 kb on + strand, within CSW01_04550at 945.258 kb on - strand, within CSW01_04550at 945.367 kb on + strand, within CSW01_04550at 945.416 kb on + strandat 945.516 kb on + strand, within CSW01_04555at 945.524 kb on - strand, within CSW01_04555at 945.615 kb on - strand, within CSW01_04555at 945.615 kb on - strand, within CSW01_04555at 945.615 kb on - strand, within CSW01_04555at 945.638 kb on + strand, within CSW01_04555at 945.724 kb on + strand, within CSW01_04555at 945.840 kb on + strand, within CSW01_04555at 945.894 kb on + strand, within CSW01_04555at 945.919 kb on - strand, within CSW01_04555at 945.921 kb on - strand, within CSW01_04555at 945.970 kb on - strand, within CSW01_04555at 945.970 kb on - strand, within CSW01_04555

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_120MIN_ZN11B
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943,006 + +0.1
943,077 + +0.3
943,085 - +0.2
943,085 - +0.2
943,085 - +0.2
943,228 + CSW01_04535 0.20 -0.6
943,228 + CSW01_04535 0.20 +1.5
943,236 - CSW01_04535 0.21 +0.1
943,387 + CSW01_04535 0.45 -0.5
943,387 + CSW01_04535 0.45 +1.5
943,395 - CSW01_04535 0.46 -0.3
943,414 - CSW01_04535 0.49 +2.3
943,445 + CSW01_04535 0.54 +0.1
943,573 + CSW01_04535 0.75 +0.5
943,616 - CSW01_04535 0.82 +0.4
943,683 + +0.7
943,683 + +1.6
943,683 + -0.3
943,683 + -0.2
943,732 - CSW01_04540 0.15 +0.6
943,809 + CSW01_04540 0.41 -1.2
943,817 - CSW01_04540 0.43 +0.5
943,849 - CSW01_04540 0.54 +0.1
944,018 + -0.7
944,026 - +0.3
944,026 - +0.5
944,026 - +0.4
944,031 + -0.5
944,132 + CSW01_04545 0.13 +1.0
944,140 - CSW01_04545 0.14 +0.5
944,233 - CSW01_04545 0.23 -0.2
944,310 + CSW01_04545 0.31 -0.4
944,310 + CSW01_04545 0.31 -0.0
944,318 - CSW01_04545 0.31 -0.3
944,318 - CSW01_04545 0.31 +0.3
944,318 - CSW01_04545 0.31 +0.6
944,371 - CSW01_04545 0.37 +0.2
944,414 + CSW01_04545 0.41 -0.3
944,419 + CSW01_04545 0.41 -0.0
944,421 + CSW01_04545 0.41 +0.3
944,429 - CSW01_04545 0.42 -0.1
944,431 + CSW01_04545 0.42 +0.1
944,431 + CSW01_04545 0.42 +1.2
944,439 - CSW01_04545 0.43 +0.3
944,464 + CSW01_04545 0.45 +0.6
944,464 + CSW01_04545 0.45 +0.6
944,465 - CSW01_04545 0.46 -0.4
944,482 - CSW01_04545 0.47 +0.0
944,563 - CSW01_04545 0.55 -0.4
944,611 + CSW01_04545 0.60 -0.1
944,619 - CSW01_04545 0.60 +0.2
944,726 - CSW01_04545 0.71 +0.5
944,727 - CSW01_04545 0.71 -0.5
944,773 + CSW01_04545 0.75 +1.3
944,773 + CSW01_04545 0.75 +0.7
944,807 + CSW01_04545 0.79 +0.2
944,833 + CSW01_04545 0.81 +0.6
944,843 + CSW01_04545 0.82 -0.1
944,843 + CSW01_04545 0.82 -0.0
944,851 - CSW01_04545 0.83 +0.2
944,851 - CSW01_04545 0.83 +0.3
944,893 + CSW01_04545 0.87 -0.5
944,915 - CSW01_04545 0.89 -1.5
945,062 + +0.1
945,123 + +0.7
945,131 - -0.0
945,131 - -0.6
945,173 + CSW01_04550 0.18 +1.0
945,214 + CSW01_04550 0.31 -0.6
945,224 + CSW01_04550 0.34 -1.0
945,232 - CSW01_04550 0.37 +0.5
945,250 + CSW01_04550 0.42 +1.1
945,250 + CSW01_04550 0.42 +0.1
945,258 - CSW01_04550 0.45 -0.1
945,367 + CSW01_04550 0.80 +0.5
945,416 + -0.1
945,516 + CSW01_04555 0.12 +0.2
945,524 - CSW01_04555 0.13 +0.1
945,615 - CSW01_04555 0.25 -0.7
945,615 - CSW01_04555 0.25 -0.3
945,615 - CSW01_04555 0.25 +0.3
945,638 + CSW01_04555 0.28 +0.7
945,724 + CSW01_04555 0.40 +0.3
945,840 + CSW01_04555 0.56 -0.3
945,894 + CSW01_04555 0.63 -0.0
945,919 - CSW01_04555 0.67 +1.9
945,921 - CSW01_04555 0.67 -0.1
945,970 - CSW01_04555 0.73 +0.3
945,970 - CSW01_04555 0.73 +0.1

Or see this region's nucleotide sequence