Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03810

Experiment: LB_0.5%bileacids_aerobic_120MIN_ZN11B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03805 and CSW01_03810 are separated by 202 nucleotidesCSW01_03810 and CSW01_03815 are separated by 334 nucleotides CSW01_03805: CSW01_03805 - polyphosphate kinase 2, at 783,334 to 784,110 _03805 CSW01_03810: CSW01_03810 - copper homeostasis protein CutC, at 784,313 to 785,077 _03810 CSW01_03815: CSW01_03815 - peroxidase, at 785,412 to 786,017 _03815 Position (kb) 784 785 786Strain fitness (log2 ratio) -1 0 1 2at 783.348 kb on + strandat 783.355 kb on + strandat 783.363 kb on - strandat 783.387 kb on - strandat 783.420 kb on - strand, within CSW01_03805at 783.441 kb on + strand, within CSW01_03805at 783.444 kb on - strand, within CSW01_03805at 783.446 kb on + strand, within CSW01_03805at 783.449 kb on - strand, within CSW01_03805at 783.469 kb on + strand, within CSW01_03805at 783.572 kb on + strand, within CSW01_03805at 783.580 kb on - strand, within CSW01_03805at 783.582 kb on + strand, within CSW01_03805at 783.585 kb on - strand, within CSW01_03805at 783.590 kb on - strand, within CSW01_03805at 783.637 kb on - strand, within CSW01_03805at 783.710 kb on - strand, within CSW01_03805at 783.717 kb on - strand, within CSW01_03805at 783.734 kb on + strand, within CSW01_03805at 783.787 kb on - strand, within CSW01_03805at 783.885 kb on - strand, within CSW01_03805at 784.005 kb on + strand, within CSW01_03805at 784.051 kb on - strandat 784.053 kb on + strandat 784.137 kb on - strandat 784.192 kb on + strandat 784.216 kb on - strandat 784.321 kb on + strandat 784.326 kb on + strandat 784.358 kb on + strandat 784.453 kb on + strand, within CSW01_03810at 784.489 kb on - strand, within CSW01_03810at 784.533 kb on - strand, within CSW01_03810at 784.550 kb on - strand, within CSW01_03810at 784.566 kb on - strand, within CSW01_03810at 784.568 kb on + strand, within CSW01_03810at 784.583 kb on + strand, within CSW01_03810at 784.616 kb on + strand, within CSW01_03810at 784.624 kb on - strand, within CSW01_03810at 784.629 kb on + strand, within CSW01_03810at 784.647 kb on - strand, within CSW01_03810at 784.663 kb on + strand, within CSW01_03810at 784.671 kb on - strand, within CSW01_03810at 784.671 kb on - strand, within CSW01_03810at 784.680 kb on + strand, within CSW01_03810at 784.680 kb on + strand, within CSW01_03810at 784.681 kb on + strand, within CSW01_03810at 784.693 kb on + strand, within CSW01_03810at 784.701 kb on - strand, within CSW01_03810at 784.725 kb on - strand, within CSW01_03810at 784.725 kb on - strand, within CSW01_03810at 784.725 kb on - strand, within CSW01_03810at 784.725 kb on - strand, within CSW01_03810at 784.753 kb on - strand, within CSW01_03810at 784.785 kb on + strand, within CSW01_03810at 784.796 kb on + strand, within CSW01_03810at 784.796 kb on + strand, within CSW01_03810at 784.796 kb on + strand, within CSW01_03810at 784.796 kb on + strand, within CSW01_03810at 784.804 kb on - strand, within CSW01_03810at 784.804 kb on - strand, within CSW01_03810at 784.804 kb on - strand, within CSW01_03810at 784.804 kb on - strand, within CSW01_03810at 784.804 kb on - strand, within CSW01_03810at 784.809 kb on + strand, within CSW01_03810at 784.859 kb on + strand, within CSW01_03810at 784.963 kb on + strand, within CSW01_03810at 784.978 kb on + strand, within CSW01_03810at 784.996 kb on + strand, within CSW01_03810at 785.004 kb on - strandat 785.033 kb on - strandat 785.088 kb on - strandat 785.088 kb on - strandat 785.088 kb on - strandat 785.088 kb on - strandat 785.178 kb on + strandat 785.180 kb on + strandat 785.180 kb on + strandat 785.188 kb on - strandat 785.271 kb on + strandat 785.311 kb on - strandat 785.385 kb on + strandat 785.638 kb on - strand, within CSW01_03815at 785.664 kb on - strand, within CSW01_03815at 785.688 kb on - strand, within CSW01_03815at 785.755 kb on + strand, within CSW01_03815at 785.763 kb on - strand, within CSW01_03815at 785.799 kb on + strand, within CSW01_03815at 785.807 kb on + strand, within CSW01_03815at 785.815 kb on - strand, within CSW01_03815at 785.815 kb on - strand, within CSW01_03815at 785.815 kb on - strand, within CSW01_03815at 785.866 kb on - strand, within CSW01_03815at 786.025 kb on + strandat 786.044 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_120MIN_ZN11B
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783,348 + +0.7
783,355 + +0.3
783,363 - +0.1
783,387 - +1.3
783,420 - CSW01_03805 0.11 -0.2
783,441 + CSW01_03805 0.14 +0.0
783,444 - CSW01_03805 0.14 +0.1
783,446 + CSW01_03805 0.14 +0.3
783,449 - CSW01_03805 0.15 +0.1
783,469 + CSW01_03805 0.17 -0.3
783,572 + CSW01_03805 0.31 +0.3
783,580 - CSW01_03805 0.32 -0.0
783,582 + CSW01_03805 0.32 +0.1
783,585 - CSW01_03805 0.32 +0.7
783,590 - CSW01_03805 0.33 -0.2
783,637 - CSW01_03805 0.39 -0.2
783,710 - CSW01_03805 0.48 +0.2
783,717 - CSW01_03805 0.49 +0.6
783,734 + CSW01_03805 0.51 +0.5
783,787 - CSW01_03805 0.58 -0.2
783,885 - CSW01_03805 0.71 +0.4
784,005 + CSW01_03805 0.86 -0.9
784,051 - -0.6
784,053 + -0.2
784,137 - +0.2
784,192 + -0.9
784,216 - +0.5
784,321 + -0.8
784,326 + +0.2
784,358 + -1.4
784,453 + CSW01_03810 0.18 +0.4
784,489 - CSW01_03810 0.23 +0.7
784,533 - CSW01_03810 0.29 +0.4
784,550 - CSW01_03810 0.31 +0.1
784,566 - CSW01_03810 0.33 -0.4
784,568 + CSW01_03810 0.33 +1.0
784,583 + CSW01_03810 0.35 -0.3
784,616 + CSW01_03810 0.40 -0.1
784,624 - CSW01_03810 0.41 -0.0
784,629 + CSW01_03810 0.41 -0.2
784,647 - CSW01_03810 0.44 +0.1
784,663 + CSW01_03810 0.46 +0.0
784,671 - CSW01_03810 0.47 -0.4
784,671 - CSW01_03810 0.47 -0.5
784,680 + CSW01_03810 0.48 +0.4
784,680 + CSW01_03810 0.48 -0.4
784,681 + CSW01_03810 0.48 -0.4
784,693 + CSW01_03810 0.50 -0.6
784,701 - CSW01_03810 0.51 +0.5
784,725 - CSW01_03810 0.54 -0.2
784,725 - CSW01_03810 0.54 +0.6
784,725 - CSW01_03810 0.54 +0.2
784,725 - CSW01_03810 0.54 -0.2
784,753 - CSW01_03810 0.58 +0.5
784,785 + CSW01_03810 0.62 +0.9
784,796 + CSW01_03810 0.63 +0.5
784,796 + CSW01_03810 0.63 +0.4
784,796 + CSW01_03810 0.63 +0.3
784,796 + CSW01_03810 0.63 -0.1
784,804 - CSW01_03810 0.64 +0.1
784,804 - CSW01_03810 0.64 +0.4
784,804 - CSW01_03810 0.64 -0.1
784,804 - CSW01_03810 0.64 +0.9
784,804 - CSW01_03810 0.64 +0.9
784,809 + CSW01_03810 0.65 +0.7
784,859 + CSW01_03810 0.71 +0.5
784,963 + CSW01_03810 0.85 -0.2
784,978 + CSW01_03810 0.87 -0.1
784,996 + CSW01_03810 0.89 +0.4
785,004 - +2.0
785,033 - +2.0
785,088 - +0.5
785,088 - +0.5
785,088 - +1.0
785,088 - -1.3
785,178 + -0.2
785,180 + +0.6
785,180 + -0.0
785,188 - +0.7
785,271 + +0.2
785,311 - +0.0
785,385 + +1.0
785,638 - CSW01_03815 0.37 +0.1
785,664 - CSW01_03815 0.42 +1.1
785,688 - CSW01_03815 0.46 -1.6
785,755 + CSW01_03815 0.57 +1.4
785,763 - CSW01_03815 0.58 +0.4
785,799 + CSW01_03815 0.64 -0.1
785,807 + CSW01_03815 0.65 +0.4
785,815 - CSW01_03815 0.67 +0.7
785,815 - CSW01_03815 0.67 +1.3
785,815 - CSW01_03815 0.67 +0.2
785,866 - CSW01_03815 0.75 +0.7
786,025 + -0.4
786,044 + +0.4

Or see this region's nucleotide sequence