Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02965

Experiment: LB_0.5%bileacids_aerobic_120MIN_ZN11B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02955 and CSW01_02960 overlap by 7 nucleotidesCSW01_02960 and CSW01_02965 are separated by 6 nucleotidesCSW01_02965 and CSW01_02970 are separated by 111 nucleotides CSW01_02955: CSW01_02955 - NADP-dependent oxidoreductase, at 584,443 to 585,393 _02955 CSW01_02960: CSW01_02960 - DedA family protein, at 585,387 to 585,848 _02960 CSW01_02965: CSW01_02965 - insulinase family protein, at 585,855 to 588,713 _02965 CSW01_02970: CSW01_02970 - glutamate--cysteine ligase, at 588,825 to 590,399 _02970 Position (kb) 585 586 587 588 589Strain fitness (log2 ratio) -2 -1 0 1 2at 584.860 kb on + strand, within CSW01_02955at 584.868 kb on - strand, within CSW01_02955at 584.896 kb on + strand, within CSW01_02955at 584.926 kb on + strand, within CSW01_02955at 584.934 kb on - strand, within CSW01_02955at 584.976 kb on - strand, within CSW01_02955at 585.057 kb on + strand, within CSW01_02955at 585.149 kb on + strand, within CSW01_02955at 585.149 kb on + strand, within CSW01_02955at 585.180 kb on - strand, within CSW01_02955at 585.211 kb on + strand, within CSW01_02955at 585.231 kb on + strand, within CSW01_02955at 585.244 kb on - strand, within CSW01_02955at 585.246 kb on + strand, within CSW01_02955at 585.246 kb on + strand, within CSW01_02955at 585.254 kb on - strand, within CSW01_02955at 585.261 kb on + strand, within CSW01_02955at 585.261 kb on + strand, within CSW01_02955at 585.272 kb on + strand, within CSW01_02955at 585.272 kb on + strand, within CSW01_02955at 585.272 kb on + strand, within CSW01_02955at 585.303 kb on + strandat 585.313 kb on + strandat 585.313 kb on - strandat 585.313 kb on - strandat 585.315 kb on + strandat 585.321 kb on - strandat 585.321 kb on - strandat 585.321 kb on - strandat 585.323 kb on - strandat 585.323 kb on - strandat 585.331 kb on + strandat 585.332 kb on + strandat 585.332 kb on + strandat 585.340 kb on - strandat 585.350 kb on - strandat 585.419 kb on + strandat 585.444 kb on + strand, within CSW01_02960at 585.474 kb on - strand, within CSW01_02960at 585.476 kb on - strand, within CSW01_02960at 585.476 kb on - strand, within CSW01_02960at 585.507 kb on - strand, within CSW01_02960at 585.515 kb on + strand, within CSW01_02960at 585.523 kb on - strand, within CSW01_02960at 585.613 kb on + strand, within CSW01_02960at 585.665 kb on + strand, within CSW01_02960at 585.724 kb on - strand, within CSW01_02960at 585.731 kb on + strand, within CSW01_02960at 585.742 kb on - strand, within CSW01_02960at 585.744 kb on - strand, within CSW01_02960at 585.796 kb on + strand, within CSW01_02960at 585.804 kb on - strandat 585.806 kb on + strandat 585.814 kb on - strandat 585.830 kb on + strandat 585.830 kb on + strandat 585.830 kb on + strandat 585.838 kb on - strandat 585.838 kb on - strandat 585.838 kb on - strandat 585.838 kb on - strandat 585.838 kb on - strandat 585.838 kb on - strandat 585.842 kb on + strandat 585.850 kb on - strandat 585.850 kb on - strandat 585.850 kb on - strandat 585.935 kb on + strandat 585.974 kb on + strandat 585.997 kb on - strandat 586.024 kb on - strandat 586.168 kb on + strand, within CSW01_02965at 586.168 kb on + strand, within CSW01_02965at 586.168 kb on + strand, within CSW01_02965at 586.168 kb on + strand, within CSW01_02965at 586.176 kb on - strand, within CSW01_02965at 586.176 kb on - strand, within CSW01_02965at 586.176 kb on - strand, within CSW01_02965at 586.375 kb on - strand, within CSW01_02965at 586.397 kb on + strand, within CSW01_02965at 586.466 kb on + strand, within CSW01_02965at 586.466 kb on + strand, within CSW01_02965at 586.466 kb on + strand, within CSW01_02965at 586.466 kb on + strand, within CSW01_02965at 586.466 kb on + strand, within CSW01_02965at 586.466 kb on + strand, within CSW01_02965at 586.466 kb on + strand, within CSW01_02965at 586.466 kb on + strand, within CSW01_02965at 586.466 kb on + strand, within CSW01_02965at 586.474 kb on - strand, within CSW01_02965at 586.474 kb on - strand, within CSW01_02965at 586.474 kb on - strand, within CSW01_02965at 586.474 kb on - strand, within CSW01_02965at 586.474 kb on - strand, within CSW01_02965at 586.474 kb on - strand, within CSW01_02965at 586.474 kb on - strand, within CSW01_02965at 586.474 kb on - strand, within CSW01_02965at 586.500 kb on + strand, within CSW01_02965at 586.579 kb on - strand, within CSW01_02965at 586.607 kb on - strand, within CSW01_02965at 586.638 kb on + strand, within CSW01_02965at 586.739 kb on + strand, within CSW01_02965at 586.739 kb on + strand, within CSW01_02965at 586.747 kb on - strand, within CSW01_02965at 586.768 kb on - strand, within CSW01_02965at 586.794 kb on + strand, within CSW01_02965at 586.794 kb on + strand, within CSW01_02965at 586.794 kb on + strand, within CSW01_02965at 586.794 kb on + strand, within CSW01_02965at 586.802 kb on - strand, within CSW01_02965at 586.802 kb on - strand, within CSW01_02965at 586.806 kb on + strand, within CSW01_02965at 586.806 kb on + strand, within CSW01_02965at 586.806 kb on + strand, within CSW01_02965at 586.806 kb on + strand, within CSW01_02965at 586.814 kb on - strand, within CSW01_02965at 586.837 kb on + strand, within CSW01_02965at 586.845 kb on - strand, within CSW01_02965at 586.845 kb on - strand, within CSW01_02965at 586.881 kb on + strand, within CSW01_02965at 586.881 kb on + strand, within CSW01_02965at 586.881 kb on + strand, within CSW01_02965at 586.881 kb on + strand, within CSW01_02965at 586.881 kb on + strand, within CSW01_02965at 586.889 kb on - strand, within CSW01_02965at 586.889 kb on - strand, within CSW01_02965at 586.891 kb on + strand, within CSW01_02965at 586.899 kb on - strand, within CSW01_02965at 586.899 kb on - strand, within CSW01_02965at 586.901 kb on + strand, within CSW01_02965at 586.909 kb on + strand, within CSW01_02965at 586.911 kb on - strand, within CSW01_02965at 586.955 kb on - strand, within CSW01_02965at 586.993 kb on + strand, within CSW01_02965at 587.023 kb on + strand, within CSW01_02965at 587.041 kb on + strand, within CSW01_02965at 587.046 kb on + strand, within CSW01_02965at 587.046 kb on + strand, within CSW01_02965at 587.046 kb on + strand, within CSW01_02965at 587.054 kb on - strand, within CSW01_02965at 587.067 kb on + strand, within CSW01_02965at 587.146 kb on - strand, within CSW01_02965at 587.173 kb on + strand, within CSW01_02965at 587.231 kb on + strand, within CSW01_02965at 587.352 kb on + strand, within CSW01_02965at 587.352 kb on + strand, within CSW01_02965at 587.352 kb on + strand, within CSW01_02965at 587.352 kb on + strand, within CSW01_02965at 587.352 kb on + strand, within CSW01_02965at 587.352 kb on + strand, within CSW01_02965at 587.352 kb on + strand, within CSW01_02965at 587.352 kb on + strand, within CSW01_02965at 587.360 kb on - strand, within CSW01_02965at 587.360 kb on - strand, within CSW01_02965at 587.362 kb on + strand, within CSW01_02965at 587.446 kb on + strand, within CSW01_02965at 587.446 kb on + strand, within CSW01_02965at 587.446 kb on + strand, within CSW01_02965at 587.735 kb on + strand, within CSW01_02965at 587.743 kb on - strand, within CSW01_02965at 587.793 kb on + strand, within CSW01_02965at 587.824 kb on + strand, within CSW01_02965at 587.858 kb on - strand, within CSW01_02965at 587.858 kb on - strand, within CSW01_02965at 587.910 kb on + strand, within CSW01_02965at 587.944 kb on - strand, within CSW01_02965at 587.948 kb on + strand, within CSW01_02965at 587.948 kb on + strand, within CSW01_02965at 587.956 kb on - strand, within CSW01_02965at 588.067 kb on - strand, within CSW01_02965at 588.133 kb on + strand, within CSW01_02965at 588.137 kb on + strand, within CSW01_02965at 588.147 kb on - strand, within CSW01_02965at 588.180 kb on + strand, within CSW01_02965at 588.185 kb on + strand, within CSW01_02965at 588.185 kb on + strand, within CSW01_02965at 588.185 kb on - strand, within CSW01_02965at 588.193 kb on - strand, within CSW01_02965at 588.193 kb on - strand, within CSW01_02965at 588.249 kb on - strand, within CSW01_02965at 588.264 kb on + strand, within CSW01_02965at 588.264 kb on + strand, within CSW01_02965at 588.264 kb on + strand, within CSW01_02965at 588.272 kb on - strand, within CSW01_02965at 588.345 kb on + strand, within CSW01_02965at 588.345 kb on + strand, within CSW01_02965at 588.420 kb on - strand, within CSW01_02965at 588.520 kb on - strandat 588.590 kb on + strandat 588.638 kb on + strandat 588.703 kb on - strandat 588.773 kb on + strandat 588.853 kb on - strandat 588.953 kb on + strandat 588.972 kb on + strandat 589.018 kb on - strand, within CSW01_02970at 589.030 kb on + strand, within CSW01_02970at 589.046 kb on + strand, within CSW01_02970at 589.089 kb on + strand, within CSW01_02970at 589.102 kb on - strand, within CSW01_02970at 589.108 kb on + strand, within CSW01_02970at 589.125 kb on + strand, within CSW01_02970at 589.159 kb on + strand, within CSW01_02970at 589.167 kb on - strand, within CSW01_02970at 589.208 kb on + strand, within CSW01_02970at 589.365 kb on + strand, within CSW01_02970at 589.433 kb on + strand, within CSW01_02970at 589.503 kb on + strand, within CSW01_02970at 589.515 kb on - strand, within CSW01_02970at 589.520 kb on + strand, within CSW01_02970at 589.530 kb on - strand, within CSW01_02970at 589.582 kb on + strand, within CSW01_02970at 589.582 kb on + strand, within CSW01_02970at 589.590 kb on - strand, within CSW01_02970at 589.610 kb on - strand, within CSW01_02970at 589.680 kb on + strand, within CSW01_02970at 589.693 kb on - strand, within CSW01_02970at 589.710 kb on + strand, within CSW01_02970

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_120MIN_ZN11B
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584,860 + CSW01_02955 0.44 -1.2
584,868 - CSW01_02955 0.45 +0.4
584,896 + CSW01_02955 0.48 +0.1
584,926 + CSW01_02955 0.51 +0.2
584,934 - CSW01_02955 0.52 -0.2
584,976 - CSW01_02955 0.56 -0.7
585,057 + CSW01_02955 0.65 +2.3
585,149 + CSW01_02955 0.74 +0.3
585,149 + CSW01_02955 0.74 -1.1
585,180 - CSW01_02955 0.77 +0.4
585,211 + CSW01_02955 0.81 -2.6
585,231 + CSW01_02955 0.83 +0.5
585,244 - CSW01_02955 0.84 +0.6
585,246 + CSW01_02955 0.84 +0.0
585,246 + CSW01_02955 0.84 -0.8
585,254 - CSW01_02955 0.85 +0.0
585,261 + CSW01_02955 0.86 -1.3
585,261 + CSW01_02955 0.86 -0.3
585,272 + CSW01_02955 0.87 -1.1
585,272 + CSW01_02955 0.87 -0.7
585,272 + CSW01_02955 0.87 +0.4
585,303 + +0.9
585,313 + +0.5
585,313 - +0.3
585,313 - -0.3
585,315 + -0.2
585,321 - +0.6
585,321 - -0.0
585,321 - +0.7
585,323 - +0.5
585,323 - -0.4
585,331 + +0.2
585,332 + +0.2
585,332 + -0.1
585,340 - +0.1
585,350 - +0.2
585,419 + -0.3
585,444 + CSW01_02960 0.12 -0.3
585,474 - CSW01_02960 0.19 +0.2
585,476 - CSW01_02960 0.19 +1.0
585,476 - CSW01_02960 0.19 -0.4
585,507 - CSW01_02960 0.26 +0.1
585,515 + CSW01_02960 0.28 -0.0
585,523 - CSW01_02960 0.29 -0.3
585,613 + CSW01_02960 0.49 +1.3
585,665 + CSW01_02960 0.60 -0.7
585,724 - CSW01_02960 0.73 -0.1
585,731 + CSW01_02960 0.74 -0.5
585,742 - CSW01_02960 0.77 +0.4
585,744 - CSW01_02960 0.77 +0.4
585,796 + CSW01_02960 0.89 +0.6
585,804 - -0.0
585,806 + -0.5
585,814 - +0.4
585,830 + +0.0
585,830 + -0.7
585,830 + +0.1
585,838 - -0.5
585,838 - +1.0
585,838 - +0.2
585,838 - -0.7
585,838 - -0.7
585,838 - -0.5
585,842 + +1.8
585,850 - -0.2
585,850 - -0.7
585,850 - -0.2
585,935 + -0.7
585,974 + -0.1
585,997 - +0.7
586,024 - -0.3
586,168 + CSW01_02965 0.11 +0.6
586,168 + CSW01_02965 0.11 -0.5
586,168 + CSW01_02965 0.11 +0.8
586,168 + CSW01_02965 0.11 -0.3
586,176 - CSW01_02965 0.11 +0.2
586,176 - CSW01_02965 0.11 -0.6
586,176 - CSW01_02965 0.11 -0.7
586,375 - CSW01_02965 0.18 +0.6
586,397 + CSW01_02965 0.19 +0.2
586,466 + CSW01_02965 0.21 +0.6
586,466 + CSW01_02965 0.21 +0.0
586,466 + CSW01_02965 0.21 -0.1
586,466 + CSW01_02965 0.21 -0.1
586,466 + CSW01_02965 0.21 +0.7
586,466 + CSW01_02965 0.21 -0.4
586,466 + CSW01_02965 0.21 +0.2
586,466 + CSW01_02965 0.21 +0.2
586,466 + CSW01_02965 0.21 -0.2
586,474 - CSW01_02965 0.22 +1.3
586,474 - CSW01_02965 0.22 -0.6
586,474 - CSW01_02965 0.22 +1.2
586,474 - CSW01_02965 0.22 +0.3
586,474 - CSW01_02965 0.22 +0.6
586,474 - CSW01_02965 0.22 -0.2
586,474 - CSW01_02965 0.22 -0.1
586,474 - CSW01_02965 0.22 -1.0
586,500 + CSW01_02965 0.23 +0.4
586,579 - CSW01_02965 0.25 -2.3
586,607 - CSW01_02965 0.26 +0.8
586,638 + CSW01_02965 0.27 +0.6
586,739 + CSW01_02965 0.31 -0.3
586,739 + CSW01_02965 0.31 -0.2
586,747 - CSW01_02965 0.31 -0.7
586,768 - CSW01_02965 0.32 -0.3
586,794 + CSW01_02965 0.33 -0.1
586,794 + CSW01_02965 0.33 -0.0
586,794 + CSW01_02965 0.33 +0.4
586,794 + CSW01_02965 0.33 -0.5
586,802 - CSW01_02965 0.33 +0.4
586,802 - CSW01_02965 0.33 -2.2
586,806 + CSW01_02965 0.33 -0.6
586,806 + CSW01_02965 0.33 -0.6
586,806 + CSW01_02965 0.33 +0.1
586,806 + CSW01_02965 0.33 -0.9
586,814 - CSW01_02965 0.34 -1.2
586,837 + CSW01_02965 0.34 +0.7
586,845 - CSW01_02965 0.35 -0.2
586,845 - CSW01_02965 0.35 +0.9
586,881 + CSW01_02965 0.36 +0.4
586,881 + CSW01_02965 0.36 +0.4
586,881 + CSW01_02965 0.36 -1.4
586,881 + CSW01_02965 0.36 +0.6
586,881 + CSW01_02965 0.36 +0.6
586,889 - CSW01_02965 0.36 +0.5
586,889 - CSW01_02965 0.36 +0.6
586,891 + CSW01_02965 0.36 -1.3
586,899 - CSW01_02965 0.37 -0.2
586,899 - CSW01_02965 0.37 -1.3
586,901 + CSW01_02965 0.37 +0.2
586,909 + CSW01_02965 0.37 -0.2
586,911 - CSW01_02965 0.37 -0.5
586,955 - CSW01_02965 0.38 +0.3
586,993 + CSW01_02965 0.40 +0.3
587,023 + CSW01_02965 0.41 +0.0
587,041 + CSW01_02965 0.41 +0.1
587,046 + CSW01_02965 0.42 -0.0
587,046 + CSW01_02965 0.42 +0.1
587,046 + CSW01_02965 0.42 +0.3
587,054 - CSW01_02965 0.42 +0.5
587,067 + CSW01_02965 0.42 +0.4
587,146 - CSW01_02965 0.45 +0.6
587,173 + CSW01_02965 0.46 +0.0
587,231 + CSW01_02965 0.48 +0.4
587,352 + CSW01_02965 0.52 -2.5
587,352 + CSW01_02965 0.52 -0.6
587,352 + CSW01_02965 0.52 -0.3
587,352 + CSW01_02965 0.52 -0.7
587,352 + CSW01_02965 0.52 +1.2
587,352 + CSW01_02965 0.52 +0.1
587,352 + CSW01_02965 0.52 -0.4
587,352 + CSW01_02965 0.52 +0.1
587,360 - CSW01_02965 0.53 +0.3
587,360 - CSW01_02965 0.53 +0.6
587,362 + CSW01_02965 0.53 +1.2
587,446 + CSW01_02965 0.56 -0.2
587,446 + CSW01_02965 0.56 -0.1
587,446 + CSW01_02965 0.56 -0.1
587,735 + CSW01_02965 0.66 +0.2
587,743 - CSW01_02965 0.66 -0.0
587,793 + CSW01_02965 0.68 +0.9
587,824 + CSW01_02965 0.69 +0.9
587,858 - CSW01_02965 0.70 -1.2
587,858 - CSW01_02965 0.70 +0.4
587,910 + CSW01_02965 0.72 +1.2
587,944 - CSW01_02965 0.73 -0.2
587,948 + CSW01_02965 0.73 -1.2
587,948 + CSW01_02965 0.73 +2.4
587,956 - CSW01_02965 0.73 -1.6
588,067 - CSW01_02965 0.77 -0.0
588,133 + CSW01_02965 0.80 -0.2
588,137 + CSW01_02965 0.80 -1.5
588,147 - CSW01_02965 0.80 +0.1
588,180 + CSW01_02965 0.81 -0.0
588,185 + CSW01_02965 0.81 +0.1
588,185 + CSW01_02965 0.81 +0.1
588,185 - CSW01_02965 0.81 +0.1
588,193 - CSW01_02965 0.82 +0.4
588,193 - CSW01_02965 0.82 +1.1
588,249 - CSW01_02965 0.84 -0.2
588,264 + CSW01_02965 0.84 +0.6
588,264 + CSW01_02965 0.84 +0.8
588,264 + CSW01_02965 0.84 +0.5
588,272 - CSW01_02965 0.85 +0.5
588,345 + CSW01_02965 0.87 +0.5
588,345 + CSW01_02965 0.87 +0.6
588,420 - CSW01_02965 0.90 -0.4
588,520 - -0.5
588,590 + +0.1
588,638 + -0.3
588,703 - +1.7
588,773 + -1.0
588,853 - -0.6
588,953 + +1.1
588,972 + -0.6
589,018 - CSW01_02970 0.12 +0.4
589,030 + CSW01_02970 0.13 -2.7
589,046 + CSW01_02970 0.14 -0.9
589,089 + CSW01_02970 0.17 -0.2
589,102 - CSW01_02970 0.18 -0.2
589,108 + CSW01_02970 0.18 -1.3
589,125 + CSW01_02970 0.19 -0.4
589,159 + CSW01_02970 0.21 -0.7
589,167 - CSW01_02970 0.22 +0.2
589,208 + CSW01_02970 0.24 -2.4
589,365 + CSW01_02970 0.34 -1.2
589,433 + CSW01_02970 0.39 +0.4
589,503 + CSW01_02970 0.43 -1.2
589,515 - CSW01_02970 0.44 -0.9
589,520 + CSW01_02970 0.44 -2.0
589,530 - CSW01_02970 0.45 +0.4
589,582 + CSW01_02970 0.48 -0.1
589,582 + CSW01_02970 0.48 -2.2
589,590 - CSW01_02970 0.49 -0.2
589,610 - CSW01_02970 0.50 -2.6
589,680 + CSW01_02970 0.54 -0.1
589,693 - CSW01_02970 0.55 -0.2
589,710 + CSW01_02970 0.56 -0.6

Or see this region's nucleotide sequence